>input_sequence_72596
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------------------------------------------------------------------------ATGGCGGG
AGGAGGGAAGGTGTACTCGTTCCAAGAGGTGCGGAAGCACAGCCAGCGCAAGGATTGCTGGCTCATCATCTCCGGCAAGG
TCGGTTTGTCATGTCATAAACCCTTCTTGCATCTACCCATCACCACTTCACTGTAGATTTCAAATGAATTTTGTGTCGAT
GCACGTGATCTGGGTCATCTGGCCATGCTTTACTTTACCTCTGCTCGCTGCCTCAGGTGTACGACGTGACGCCGTTCATG
GAGGAGCACCCCGGCGGCGACGAGGTCCTGCTGGCGTGCACCGGTGAGCCCTCCCCT-CCCATCCCCCGCGTGCTCTCTC
TTTGTTCCGGTC---------GGCCGGGAATGATTTGGCACGTCCTGCTGGCCGTGGCCGTGCAGGCAAGGACGCGACGG
CCGACTTCGAGGACATCGGCCACTCGGACGCAGCCAAGGAGCTGATGCCGCAGTACTGCATCGGGGAGGTCGACGCCGCC
ACCATCCCGGCCAAGCTCGCCCACGCCGTCCTCCCCGCCAAGGGGGCGGCGGCGGCTCCGGCGCCACGCGCGAGCGCGGG
CCAGGGCGTCTGGCTCACGGTGCTGCAGCTCGCCCTGCCCCTCCTGCTGGTGGCCATGGCCTTCGCGCTTCAGAACTTCG
CCAAAACCAAAACAGAGTAG------------------------------------------------------------
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>chr6D_1_TraesCS6D01G222900
TTTCTTAAGTTCCGAGGAGAGACTTGCCGTTACTGTCCTTCCCTCAGCAGTGCGCTTCGTACTGCGTCTGCGCCTCTTGT
GTTTCAAAAGGAAACACTGGCAAGAGTCCGAACCGCACAGAACTCTCGAAGCAGGCAAGGCACTGGCAGCAGCGCAGTTG
GATTCCTGCACTGCACGGAAATGCCGCATGCCTTTTGCGTTGCCCTGCTCCGAGCCATCGCGTTGGAATGCGACCGTGTG
CGGCTGTGTCGTTTGCGGAGCTGCAGGCCGGCAGGCCCGCGGTAGTTGCAGCCATCTTCTTGCCAGATACTAGTACTTAC
GTCCAAACATTGCGTCTACGCGCCCATCC---------------------------------GCTGCCTGCATCACTACT
CCTTTTTGACGGGTGCCCGCACCATCATATTACTACTTTGTTCGATTGCCCGTGAAAACACCCCTGACCATATACATCAA
AGCAGACCGAGATCGATCGGTCGGTCGGTCGGTCTTCTCCTTCGCTTTTGAAGCAGGGTTTGATCTGCTCTGCTCTTGCC
GCGTAACCCATGGGCGATTTCCGTCTAGTCCTCAAGGGATTATTATAACATGATGAAAAAAATTGACCGTGCGAGCGCAG
TGGAGTTACCGGTGAGGAGCCAGGGAATTACCGAGAGATCTTCCCATCACAGCGCTGATGGCCTTTGTTGACTTGGATCC
GTCGCCATTCGCCAGTCTCTTGCGCCGGAGCCAAATGTCTCGGCATGTGATGTGAGCCTCCTCCGCTAGAGACTCGGCGT
GGCGCCAGGTCAAAGCCAATTC--GCCGATCATCCACACGTGACGCGACCGCACTGCACGTCTTTGGAGACCAGA-----
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--------------------------------------------------CGGCAGCGCGGTCCGACACGCACGAT----
GTATATATACACCGCCCCGTGCCTAGCCCTGCCCCCCTCATCTTCCAGAGGTCCAAA-ATTCAGCAGCAAACAGCATCTA
GTTTCTTGATCCGGTTCTGTTTAC-CCTGAAGGCTCGGCT--TCCGCGGGTGGC--------------TGCGATGGCGGG
AGGAGGGAAGGTGTACTCGTTCCAAGAGGTGCGGAAGCACAGCCAGCGCAAGGATTGCTGGCTCATCATCTCCGGCAAGG
TCGGTTTGTCATGTCATAAACCCTTCTTGCATCTACCCATCACCACTTCACTGTAGATTTCAAATGAATTTTGTGTCGAT
GCACGTGATCTGGGTCATCTGGCCATGCTTTACTTTACCTCTGCTCGCTGCCTCAGGTGTACGACGTGACGCCGTTCATG
GAGGAGCACCCCGGCGGCGACGAGGTCCTGCTGGCGTGCACCGGTGAGCCCTCCCCT-CCCATCCCCCGCGTGCTCTCTC
TTTGTTCCGGTC---------GGCCGGGAATGATTTGGCACGTCCTGCTGGCCGTGGCCGTGCAGGCAAGGACGCGACGG
CCGACTTCGAGGACATCGGCCACTCGGACGCAGCCAAGGAGCTGATGCCGCAGTACTGCATCGGGGAGGTCGACGCCGCC
ACCATCCCGGCCAAGCTCGCCCACGCCGTCCTCCCCGCCAAGGGGGCGGCGGCGGCTCCGGCGCCACGCGCGAGCGCGGG
CCAGGGCGTCTGGCTCACGGTGCTGCAGCTCGCCCTGCCCCTCCTGCTGGTGGCCATGGCCTTCGCGCTTCAGAACTTCG
CCAAAACCAAAACAGAGTAGACGAG----AAGGACAGATGCCGTCGCGGATACCGGCCTGCGGCCTCTTGGAAGTATCTG
CACGTCCAACCACTTCCTGTCGACGTCTCTACCGCTGCAATCGTTGTAATTCCATCTCCCATATGTGTACTGACGTCATT
ATTGGTGGAATTCATA----------------------------------------------------------------
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----------------------------------------------------------------------TATCTATAAT
CGCCGAGTTTCAGAAAAGATATAAGA------------------------------------------------------
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-------------------CTATAATACTATGTAGTGTGGGAATAATTCAAAACGTGAGCCGCTGG-------ATGCACT
CAGTCCGATGGTGGAAAGTTGGCAAATCCTTTTTTTTTCGAAACGGAGGCAAAAAATTTGCCTCATCTCATTAATTAAGA
AGAGTTTTGAATTACATGACTGACCGCCCGTAGACGGCCCGAAACCGATAAGCCTACTCTCGCGGCATAAGAGAACTCAG
ACGTTCGGCCCCTGCCAACCCCCAAAGTCTGACCTCCGCCTTGATTCTAGACGTGATTACATTTGGCATGGCGGACACCA
TCCTAAATACTCTCGCATTCCGCTCGTTCCAAATTTCCCGTGAAACCAACATGACGAAAGTTGGCAAATCCTTACACTTC
TGTCTTCTGACCATT----TGGATTGCTCTTT-GCGCTAGATTGTGCACGTGAAGTTCAG--------------------
----------------TCCTAAACTTAAA---------------------------------------------------
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-----------------------------------------TCCAAACCCCTTAATGTCTCTGCTCAGCCATAACCTTTT
----AGTTGGGGCTTCTCAAAAGTCGAGAACCATCTAGAAGACGCCAAACGAAAGGTAAGTGTGAGAATAGCAGCAGATG
CCAGCG-------GTACAAATGATGCATGACATGTTGGTCGTTTGCTAATCTGTTTTCACTACCCTTGGCCTTTTGGAAG
CTACATCTAATGAAAAAAAATGCAAGTGTTTTGACATGTTATCAGTGTTTTTTAAGAACACTTCAGTTAAA----AACTA
TAGGAGTTCCACACAGCAATCGCAATTTGTTTTTGTAGTATATATATCTTCCGGTTCCATGACCGATTCAGCATGGACTG
GCTAGACAGAAACCGGAGAATCTCCT
>chr6B_316
CTC-----------------------------------------------------------------------------
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------------------------------------------------------------------------------AC
GTCCAAACATTGCGTCTACGCGCCCATCGGCTGCCTGCATCTTTTTTTTTTTTTGCAGGGGGGCTGCCTGCATCACTACA
CTTTTTTGACGGGTGCCCGCACCATCATAGTACTACTTTGTTGGATCGCCCGTGAAAACACCCCTGACCATATACATCAA
AGCAGACCGAGATCGATCGGTC--------GGTCTTCCCCTTCCCTTTTGAAGCGGGG-TTGATCTGATCTGCTCTTGCC
GCGTAAACCATGGGAAT----------------------------TAAGATAATGAAAAAGTGTGACCGTGTGCGCGCGG
TAGAGTTAACGGTGACGAGCCATGAAATTACTGAGAGATTTTCCCATCACAGCGCTGATGACTTTGGTTGATTTCGATC-
----------GCCAGTCTTGTGCACCGGAGCCGAATTGT---------------------CTCCGCTAGAGACTTGCCGT
GCTGCCAGGGTCAAACACCAAACGGCAGGTCATCCACACGTGACGAGACCGCACTGCGTCCGTCCAGGTCCAGCCCATC-
-TATATTTTATTTTGACCCG----------------------------GCGTCCAGTCCATCATCGCCCGCTCGTTTTGT
CTATATCAGCCAGCAGCCGGCCCGAAACGGTGGGCAGCTCAAGCAGACACCGCCCGTGCAGTCCAACACGCACGGCTCGC
GTATAAATACACTGCAGCAGGTG----CCTGAACTGCTCGTCATTCACAAGTTCCCAGACCAAAGTACTCCATCCGGTTC
C---TTCGATCTGGTTCTGTTCGTTCCTGGAGGCTCGGCT--TCCGAGGCAAGGAAGCACAGGCTGCTTGCGATGGCGGG
GGGAGGGAAGGTGTACTCGTTCCAAGAGGTGCGGAAGCACAGCCAGCGCAAGGATTGCTGGCTCATCATCTCCGGCAAGG
TCAGTTTGTCAT-----AAACCCTTCTTGCATCTACCCATCACCACTCCACTGTAGACTTCAGATGAATTTTGTGTCGAC
GCACATGATTTGGGTCATCTGGCCGGCCATG-CTTTACCTCTGCTCGCTGCC--AGGTGTACGACGTGACGCCCTTCATG
GAGGAGCACCCGGGCGGCGACGAGGTCCTGCTGGCGTGCACCGGTGAGCCCTCCCCTCCCCTTCTCTCGCGTGCTTTCGC
AGATCGTT--CTCCTTGTTGTGGCCGGGAGTGATTTGGCATGTCCTGGGCGGG-----CGTGCAGGCAAGGACGCGACGG
CCGACTTCGAGGACATCGGCCACTCGGACGCCGCCAAGGAGCTGATGCCGCAGTACTGCATCGGGGAGGTCGACGCCGCC
ACCATCCCGGCCAAGCTCGCACACGCCGTCCTCCCCGCCAAGGGGGCAGCGGCGGCTCCGGCGCCACGCGCGAGCACGGG
CCAGGGCGTCTGGCTAACGGTGCTGCAGCTCGCCCTGCCCCTCCTGCTGGTGGCCATGGCCTTCGCGCTTCAGAACTTCG
CCAAAACCAAAACAGAGTAGATGAGGAGAAAGGACGGATACCGTCGCGGATACCGGCCTGCGGCCTCTTGGAAGTATCTG
CACGTCCAACCAGTTGATGTCAACATCTCTACCGCTGCAATCGTTGTGGTTCCATCTCCCCTATGTGTACTGACGTAATT
ATTGGTGGAATTCATATACTCCCTCCGTCTAGGTGAACAAGTCATCTTAGGTTGTGCACCGTGACCAAAGAGAAAGGGAA
AACGAGAGTACTTAATGTTCATTTGCTAATTAATAGCATTGCATGCAATGAACTAACCACTGCATGTCGTGTTTGGTAGT
CTCAAGTCATTAAAACCATGCACACCCCACATCTTTTATTGGTTGATATGTCAAGAAACAAGAAACAAGGTAGAATTTAA
TGCACCGCGCCTAAGTGTTTTGAGAATATTTGATTTTCATAAGATGACTTACACACCTAGACGGAGGGAGTATCTATAAT
CGCCGAGTTTCAGACAAAAAGAAAATCTATAATCCTATATAACTGGGGCCTCTCAAAAGTCTGAGAACTATCTAGAAGAC
GGCAAACGAAAGGTAAGTGTGAGAATAGCAGCAGATGCCAGCGGTACAAATGATGCATGATATGTTGGTCGTTTGCTAAT
CTGTTCTCGCTACGCGTGACCTTTTGGAGGCTACATCTAAGTGGGGGAAAATGCGAGTATTTTGACATGTTATCTAAGAG
CACTTCAGTTACAAATCTACTATAATCCTATATAGTGTGGGACTAACTCAAAACGTGAGCCGCTGGATGCACTATGCACT
CAGTCCAATGGTG-------------------------------------------------------------------
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-------------------------------------------------------GAAAGTTGGCAAATCCTTACACTTC
TGCCTTCTGACCATTGGATTGGATTGCTCTTT-GCACTAGATTGTGCACGTGGAGTTCAGCCTCCGAGAAGCCAGCAATC
TAGCTCCCTCCCTGAGTCCTAAATTTGAA---------------------------------------------------
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-----------------------------------------TCCGTACCCCTTAT--TCTTTGCTCAGCCATAACCTTTT
TTTTAGCTGGGGCCGATCAAAAGTCAAGAACTATCTAGAAGACGCCAAACGAAAGGTAAGTGTGAGAATAGCAGCAGATG
CCAGCGCCCAGCAGTACAAATGATGCATGCCATGTTGGTCGTTTGCTAATCTGTTTTCACTACCCTTG-CCTTTTGGAAT
CTACATCTAATTAAAAAAT----AAGTGTTTTGACATGTTATCAGTGTTTTTTAAGAACACTTCAGTTACAAACTAACTA
TAGTCGTTCCACACACCAATCGCAATTTGTTTTTCTAGTACATATATCTTCCAGTTCCATGACCGATTCAACATGGACTG
GCTAGACAGAAACCGGAGAATCTCCT
>chr6A_552
CTAGCCTAAGAGATT-----------------------------------------------------------------
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---------------AT----------------------------TAACATGATGAAAAAGTTTGACCGTGCGAGCGCGG
TGGAGTTACCGTTGACGAGCCATGAAATTACTGAGAGATCTTCCCATCACAGCGCTGATGAAC-----------------
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---------------------C--GCAGGTCATCCACACGTGACGAGACCGCACTGCGTCCGTC------CAGCCCATCC
ATATATTTTATTTTGACCCGAAGAGACCGTAGAACAAACTGCTCTACGGCGTCCAGTCCA-CATCGCCCGCTCGTCTACA
G-----CAGCCAGCAGCCGGCCCAAAACGGTGGGCAGCTCAAGCAGATAC----------------CACGCACGGCTCGC
GTATAAATACACTGCCGCAGGTG----CCTGAACCGCTCGCCATTCAGAAGTTCCAA-ACCAAAGTACTCCGTCCGGTTC
C---CTCGATCTGGTTCTGTTCGTCCCCTTTGAATTTCCGACTCCGAGGCAAGGAAGCA--GGCTGCTTGCGATGGCGGG
AGGAGGGAAGGTGTACTCGTTCCAAGAGGTGCGCAAGCACAGCCAACGCAAGGATTGCTGGCTCATCATCTCCGGCAAGG
TCGGTTCGTCATGTCATAAACCCTCGTTGCATCTAC----CACCACTTCACTTGC--CTTCAGATGAATTTTTTGTAGAC
GCACATGATCTGGGTTATCTGGCCAT--ATG-ATTTACCTCTGCTCGCTGCCTCAGGTGTACGACGTGACGCCCTTCATG
GAGGAGCACCCGGGCGGCGACGAGGTCCTGCTGGCGTGCACCGGTGAGCCCTCCTTTCGTCTTCTCTCGCGTGCTTTCAC
GGATCGTTTTCTCTTGGTTGTGGCCGGGAATGATTTGGCATGTCTTA--CGGG-----CGTGCAGGCAAGGACGCGACGG
CCGACTTCGAGGACATCGGCCACTCGGACTCCGCCAAGGAGCTGATGCCGCAGTACTGCATCGGGGAGGTCGACGCCGCC
ACCGTCCCGGCCAAGCTCGCCCGCGCCGTCCTCCCCGCCAAGGGGGCGGCGGC---TCCTGCGCCACGCGCGAGCACGGG
CCAGGGCGTCTGGCTCACGGTGCTGCAGCTCGCCCTGCCTCTCCTGCTGGTGGCCATGGCCTTCGCGCTTCAGAACTTCG
CCAAAACCAAAACAGAGTAGACGAG----AAGGACAGATGCCGTCGCGGATACCGG-CTGCGGTCTCTTGGAAGTATCTG
CACGTCCAACCAGTTGCTGTCGACGTCTCTACCGCTGCAATCGTTGTAGTTCCATCTC----------ACCGACGTAATT
ATTGGTGGAATTCATAT---------------------------------------------------------------
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----------------------------------------------------------------------TATCTATAAT
CGCCAAGTTTCAGAAAAAAAATATCTATAT--------------------------------------------------
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-------------------CTATAATCCTATATAGTGTGGGAATAACTCAAAACTTGAGCCGCTGGATGCACT-------
CAGTCCGATGGTG-------------------------------------------------------------------
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-------------------------------------------------------GAAAGTTGGCAAATCCTTACACTTC
TGTCTTCTGACCATT----TGGATTGCTCTTTTGCGCTAGATTGTGCACGTGAAGTTCAG--------------------
----------------TCCTAAATTTAAATCTTGGCTTGCGCTCCACAATGTCCAGCCCAACGATTGGATTGATATGGAT
TCAGTTAAGGATTGGTGGAGTCAAAATGCCACTAAGCAAACTGGATTCGGTTAAGGATTGGTGGAGTCAAAATGCCACCA
ACCAAACTCCATCGAGAAGGCCGCTTGTCTCCCTGATGATGCTTATCTCCTGGGAAATATGAAAGGAGCGAAACGCTAGA
GTTTTCCACAACATGGCCGTTCCAGTGAGAGTGTTGGTCGCCAAGATTAAAGAGGAATGCTCGCTTTGGAGCCTCGCGGG
AGCAAAACATTTGTGTAACATTATGTCATGAGAATGATGTACTGTATTTGGCCATACATTGTTAACCTTCTCTCTTAATC
AATGAAAATGGCAAATCTTTTGCCTAGTTTAAAAAAAATAATCCAAGCCCCTTAATGTCTCTGCTCAGCCATAACCTTTT
----AGCTGGGGCTTCTCAAAAGTCGAGAACTATCTAGAAGACGCCAAACGAAAGGGAAGTGTGAGAATAGCAGCAGATG
CCAGCAGTACAAA---------ATGAATGACATGTTGGTCGTTTGCTAATCTGTTTTCACTACCCTTGGCCTTTTGGAAG
CTGCATCTAATGAAATAAA-TGCAAGTGTTTTGACATGTTATCAGTGTTTTTTAAGAACACTCCAGTTAAA----AACTA
TAGGAGTTCCACACAGCAATTGCAATTTGTTTTCGTAGTATATATGTCTTCAGGTTTCATGACCGATTCAGCATGGACTG
GCTAGACAGAAACCGGAGAATCTCCT
>SNPs
S-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
----------------------------S--------------------------------------------------S
-S---------------------------S------------S---S---------------------------------
----------------------SSSSSSSS-------S-----S----------S---S--------S------------
------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SS----------------S-
---------------S------S-S------S----------------------------S----S-----S--S----S
SSSSSSSSSS--------SS---S--------S---SSSSSSSSSSSSSSSSSSSSSSSS--------------S-S---
-SS------SSS--S-SSSSS-----S-S----------------S-----------SSSSS-SSS-SSS-SSSS-----
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----------------------------------------------------S-S-S--S----S---------SS----
-----S------S---S-SS-SSSSSS----SS--S---S--S-S----S--S-S----SSS-SSSS-SSSSSS-SSS-S
SSSS--S----S---------SSS-----S----------------S--SSS-S--------------------------
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---------------------------------------------------------S----S----------------S
----S---------------------S-S-SS-----------------------------------------S------
-----------S-------------------------------------------------S--S-S--------S--S-
SSSSSSSSSSSS----------------------------S------SSS-SSSSSSS----------------------
-------------------------------S------------------------------------------------
---------------------------------------------------------------------------S----
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------------S--S--------------------------------S-----------S---------------S---
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-----------------S-S----SS------------------------------------------------------
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--------------------------S----S--------------S---------------------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
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-----------------------S--------------------------------------------------------
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------S------------------------S------------------------------------------------
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-------------------S------------------------------------------------------------
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>forward_43
-----------------------TTGCCGTTACTGTCCTTCCC-------------------------------------
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>reverse_2757
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------------------------------------GCCCGAAACCGATAAGCCTA------------------------
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