>input_sequence_72593
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------------------------------------------------------ATGAGCAAGCTCTGGACGATCCTCAC
CCACCTCCACACCCTCGCAGGGTATGTGCAGAT-----------TGAATTTGGTTTCCCTTCGGTTCTTGTTTGTGCAGT
TCTTGCCGAGCTCAACTGCCGCGTGCGGCCATTTGGTGTTGTTCT---CTGTTGCTGCTGCAGGCCTGGCGTGATGCTCC
TGTACCCCCTGTATGCGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGCTGGACGACGAGCAGTGGCTGGCCTACTGGATC
CTCTACTCCTTCGTCACGCTCGTCGAGATGGTCCTCGAGTCCCTCATCTACTGGTAATTAAACGACAACCAAATCAAGCA
AGCTCATGGCTGCTTTTCTTATTTGATTTCT-----------------GTGGTGGTTTATTCTTCTTCTTGTTCTCAGGA
TACCGATCTGGTACGAGCTGAAGCTGCTGTTCCTGGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCGGCCTTCATCTAC
GACAGGTTCGTCAGGGAGCAGCTCAGGAAGCACGGCCTCACCAACCACCCCGGCAGCGGCATCGGCAGC---A------A
GGAGAACGGCTGCAAGGTCGACAAGTCGTCCTCGCCGTCGACGTCTCCCAAGGAGAAGGAGAGCGCCAAGAGCAGGTTCC
TCTCCTTCGTCACTCCCAAGAAAGACCACTGA------------------------------------------------
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>chr5B_1_TraesCS5B01G069300
AGCTTTAG-TGGAACCTGATGTT--TATAAACACAATCATCAGTAGACAATTGATAACCCAGCGCAGGCCACCACATGTT
------GAGCCCCTCCCAATGCGCGTGCTGCCCGCAAGCGACGGGACGTGTGCTGATCCGG-CCCCCGCGCCGACCTGAC
GCCTTCTTTATGATCTCTCGC--CGCCCGAGGTCTGGTTGGCTGTGCGCGAGCGT---GTACGACTGCTGGTGGCTCCGT
TGCCCTTTGTGCCCAACAA--------------AGGTGTTCTGGAGGACGCGCAAAAAAAGTGTTCTCATCACGGGTG--
GGGTGAGGTGAGCTGATGACTCGGTTTCCGGTGAACCATCTCCACTTTTGTGCCCAACAAAAGCATCCTCATTTTCGCGG
GTGGGGTGAGGTGAGCCGATGGCTCGGTTTCATCAGGTGAGCAATCTCCACCGAGCGTTGTTTTGCTTGGTGCCAACTCC
AC-------ATGCCTCTTCGCTGTCATTTTAACTGCTCGCTTAGCCATTGTCTTCCACAAAACCTTAGATTCAGCACAAC
ACGTCAAAAATACTTGA-GGCTTGATCTGGTT---------------------CTTAAGCACCAAAAAAACAGTTACTC-
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--------------------------------------------------------------------TATATCGGCCGT
CCTGATAACGAGTTGCAAGAAGAATCTGCCGCTTGACCTCACTTCCGTTTCCTAGATCTCTCGCAGTAGATCCAAAGA--
------TAT-AAAACCCTCCGGAGAAGATTTCGATGCATCACAAAGTAG--------TGCTCCCACCTGACCTTGCCGAC
CTGGTCGTGGTCGGTGCTCCATCTCGTCGCCACGTGTACTGTCCCCATCAAACGCGTAGACAAAAAAAAGCCCCTCCTTC
ATTGGCGCCGCGCCATGTGTCCTCCACTCCGCCCGGCCACGGTA-TTGTTATAAATCCATAGCTTTCCCCTT-CCCG---
GAACAACAACAACATCCAAATCCAAATCCAA-----------------GAATACGCACTGTTCTC------TCCATCAGT
CTCCGCCTCCACTGATTCGTCCAACCAAGAAGAAGAAGAGCTACAGAAGAGAAGATGAGCAAGCTCTGGACGATCCTCAC
CCACCTCCACACCCTCGCAGGGTATGTGCAGAT-----------TGAATTTGGTTTCCCTTCGGTTCTTGTTTGTGCAGT
TCTTGCCGAGCTCAACTGCCGCGTGCGGCCATTTGGTGTTGTTCT---CTGTTGCTGCTGCAGGCCTGGCGTGATGCTCC
TGTACCCCCTGTATGCGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGCTGGACGACGAGCAGTGGCTGGCCTACTGGATC
CTCTACTCCTTCGTCACGCTCGTCGAGATGGTCCTCGAGTCCCTCATCTACTGGTAATTAAACGACAACCAAATCAAGCA
AGCTCATGGCTGCTTTTCTTATTTGATTTCT-----------------GTGGTGGTTTATTCTTCTTCTTGTTCTCAGGA
TACCGATCTGGTACGAGCTGAAGCTGCTGTTCCTGGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCGGCCTTCATCTAC
GACAGGTTCGTCAGGGAGCAGCTCAGGAAGCACGGCCTCACCAACCACCCCGGCAGCGGCATCGGCAGC---A------A
GGAGAACGGCTGCAAGGTCGACAAGTCGTCCTCGCCGTCGACGTCTCCCAAGGAGAAGGAGAGCGCCAAGAGCAGGTTCC
TCTCCTTCGTCACTCCCAAGAAAGACCACTGAGTGAGATTGGAGCAGCAACCAGAGATCCCAGCAGCTAGCTTCTTGGCT
TCTGTTTTTTTTTTTTTTGGTTTCTTTGAGATTTTAGCTTGTGGTGCTGGAGTA--TTACATATCTTGTCCAAAAAAT-T
TGTACTATGACTCCATATATGAGGCCCTCGGTTGCAGGCTAGCTAGAT----GGTGGCTTGTGGCGTTGTAGTATTA---
CATATATCTGTCCAAAAAAATGTACTACTGAGATTGGAGCAGTAACCAGAGATTTCATCTCATCT-ATCCCTTCGGCTAA
GCTAGCTTGTGGTGTTCATTTTTGAGTTTTAGCTAGCTGATTTGACGTGAAGCTTAAAAATTGAAATGGAC-CAAGTTGA
ATTTCTCATAAGATAGCAGATGTAAGGCCAGGCAGGCAAACTGTCCGGTGCTACCTCTATAAACTACTCCCTCCGTCCCC
ATAAACTGGGTGGTGAGGCCAGTCTCAGGAAGATCCGGGCCCCTACTTAGTTTGCACCCTTTCCCTTTACATGTATCCCT
GCTTCTGCTTTGTCCTCTGATGGTCCGGTGATGGCCAGCTGCACAAGCTGTGCAGCGCTTACATCACCTTCATGTAAATG
ACTACGGTCATCCGGACATTTTTTTTGCCTGTTTTAAATGCATAAGGTAGATAGAATGCATAAGGTAGATTTTTTTTAGA
AAAGGACGATGACCCCCGGCCTCTGCATCTGGGCGATGCATACGGCCACTTTATTAAGTATTCTCACAAGACCTTACAAA
GTCATATAACACCTATCCAATCGATGAAGGGGCGCTGATAGTCTGGGTCTAATACGAAACAGACATCGCAGCTAAACCTA
AACATCTAAAACCTGAGGTACCAACCAGGACGCCTGCCGGGTATGGGGCACCTACCAGTCTGGCGCACTCCTCAACCAGG
ACGCCTGCCGGGTATGATGCCGCCGCAGCCACCTGCCACCAAACCATCTTCAGAGCTATACTGTTGCATCTACCTTGCAC
GGTC
>chr5D_1
AGCTTCAGTTGAAACCTGGTGTTTATATAAACACAATCATCAGTAGACAACCCA---------GCAGGCCACCACATGCC
------AAGCCCCTCCCAATGCGCGTGCTGCCCGCAAGCGACGGGACGTGTGCTGATCT-GCCCCCCGCGCCGACCTGAC
GCCTTCTTTATGATCTCTCGC--CGCCCGAGGTCTGGTTGGCTGTGCGCGAGCGT---GTACGACTGCTGGTGGCTCCGT
TACCCTTTGTGCCCAACAA--------------AGGTTTTCTGGAGGACGCGCAAAAAAAGTGTTCTCATCACGGATGAT
GGGTGAGGTGAGCTGATGACTCGGTTTCCGGTGAACCATCTCCAC-TTTGTGCCCAACAAAAGTGTTCTCATCA---CGG
GTGGGGTGAGGTGAGCCGATGGCTCGGTTTCA---GGTGAGCAATCTCCACCGAGCATTGTTGTGCTTGGTGCCAACTCC
AC-------ATGTCTCTTCGATGTCATTTTAACTACTCCCT-AGCCATTGTCTTCCACAAAACCTTAGATTCAGCACAAC
ACGCCAATAATACTGGAGGGCTTGATCTGGTT---------------------CTGAAGCACCAAAAAAACAGTTACTC-
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--------------------------------------------------------------------TATATCGGCCGT
CCTCATAACGTATTGCAGGAGGAATCTGCCTCTTGACCTGATTTACATTTCCTAGATCTCTCACAGTAGATCCAATCCAA
AGATAGTAT-AAAAACCTCCGGAGAAGATTTCGATGCATCACAAAGTAG--------TACTCCCACCTGACC-TGCCGAC
CTGGTCGTGGTCGGTGCTCCATCCTGTCGCCACGTGTACTGTCCCCATCAAACGCGTAGACAAAAAGAAGCCCCTCCTTC
AGTGGCGCCGCGCCATGTGTCCTCCACTCCGCCCGGCCACGGTATTTGTTATAAATCCACAGCTTTCCCCTCCCCCG---
CAACAACAACAACATCCAAATCCAAATCCAAACCCAAACCAAAACCAAGAAGACACACTGTTCTC------TCCATCAGT
CTCCGCCTCAACTGATTCGTCCAACCAAGAAGAAGAAGAGCTACAGA---GAAGATGAGCAAGCTCTGGACCATCCTCAC
CCACCTCCACACCCTCGCAGGGTATGTGCAGAT-----------TGAATCTTTTTCTTGTTCGGTTCTTGTTCATAG---
------TGAGCTCGACTGACGGGTGCGGCCATTTGCTCGTGTTCT---C---TGCTGCTGCAGGCCTGGCGTGATGCTCC
TGTACCCGTTGTATGCGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGCTGGACGACGAGCAGTGGCTGGCCTACTGGATC
CTCTACTCCTTCGTCACGCTCGTCGAGATGGTCCTCGAGTCCCTCATCTACTGGTAATTAAACGACAGGCAAATCAAGCA
AGTCCATGGCCGCTTTTCTTGTTTGATTTCT-----------------GTGGTGGCTTACTCTGCTTCTCACTCTCAGGA
TACCGATCTGGTACGAGCTGAAGCTACTGTTCCTGGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCGGCCTTCATCTAC
GACAGGTTCGTCAGGGAGCAGCTCAGGAAGCACGGCCTCACCAACCACCCCGGCAGCGGCATCAGCAGCGGCAGCAAGGA
GGAGAACGGCGGCAAGGTCGACAAGTCGTCCTCGCCGTCGACGTCTCCCAAGGAGAAGGAGAACGCCAAGAGCAGGTTCC
TCTCCTTCGTCGCTCCCAAGAAAGACCACTGAAGGAGATTGGAGCAGCAACCAGAGATCCCAGCAGCTAGCTTCTTGGCT
TGTGGTG----TTTTCTTGGTTTGTTTGAGATTTTAGATTGTGGTGTTGAGAGTATTTACATATCTTGTCAGAAAAAAAT
TGTACTACGACTCCATATATGAGGCCCTCGGTTGCAGGCTAGCTAGATGGTGGGTGGCTTGTGGTGTTGTAGTATTA---
C--ATATCTGTCCAAAAAAATGTAGTACTGAGATTGGAGCAGTAACCAGAGATTTCATCTCATTTCGTCCCTTCGGCTAA
GCTAGCTTGTGATGTTCATTCTTGAGATTTGGCTAGCTGATTTGATGTGAAGCTTACACATATAGAATAGATCAAGTTGA
ACTTTTCATAAGACGGCAGATGTAAGGCCA--------------------------------------------------
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----
>chr5A_50
GACAA---------------------------------------------CCCA---------GCAGGCCGCCACATGTG
AAGGTGAAGCCCCTCCCAATGCGCGTGCTGCCCGCAAGCGCCGGGATGTGTGCTGATCT-G-CCCCCGCGCCGACCTGAC
GCCTTCTTTATGATCTCTCTCGGCGCCCGATGTCTGGGTGGCGCTGCGCGAGCGCGTAGTACGACTGCCGGTGGCCCCGT
TGCTCTTTGTGCGGGAGCAGGCAAGCCCCGTCCAGGTGGTCTGGACCCGCAC--AAAAAAGTGTTCTCATCACGGGTG--
GGGTGAGGTGAGCCGATGACTCGGTTTCCGGTGAACAATCCCCAC-TTTGTGCCCAACAAAAGCATTCTCATTTTCGCGG
GTGGGGTGAGGCGAGCTGATAGCTCGGTTTCATCAGGTGAGCAATCTCCACCGAGCATTGTTTTGCTTGGTGCCAACTCC
ACTCTCCACATGTCTCTTCACTGACATTTGAACTACAATTTGTTAGAGAAACCCTGAGTTGATATCTCATTAAGAAGATG
GCCTTTAGTTAGTAGGAGCAGCCTAGATGTACAACCAACTCACTAACCAAACCCTGAAGCAGCAAAAAAATACTCCCTCC
ATTTCAAAATATAGTGCTCCTGCATTTTTCGAGGTTCAACTTTGACCATAAATTTAACCAACGAGATCAACTGCGGCGGA
AGAAAAAATTATATAATTGAAAACTTCTTTCGAATACGAATTCACTGATATAATTTTTGCTCCCGCTACAATCGGTCTTG
ATAGTTAAATTTACGGTCAAAGTTGAAGCACGACCACTATATTGTGGAATGGAGGGAGTAGTTAGTTATATATCGGCCGT
CCTCCCAACGAATTGCAGGGAGAATCTGCCTCTCGGCCTCACTTCCGATTCC---------------------AATCCAA
AGAAAATAAAAAAACCCTCCGGAGAAGATTTCGATGCATCACAAAGTAGGAGTATAGTACTCCCACCTGACC-TGCCGAC
CTGGTCGTGGTCGGTGCTCCATCCTGTCGCCACGTGTACTGTCCCCATCAAACGCGTAGAC-AAAAGAAGCCCCTCCTTC
AGTGGCGCCGCGCCATGTGTCCTCCACTCCGCCCGGCCACGGCA-TTGTTATAAATCGACAGCTTTCCCCTCCCCCGGAA
CAACAACAACAACATCCAAAAT-----------CCAAACCCAAGCCAAGAACACACGCTGTTCTGAATCTGTCCATCAGT
CTCCGCTTCCACTGATTCGTCCAGCCGAGAAGAAGAAGAGCTGC--A---GAAGATGAGCAAGCTCTGGACCATCCTCAC
CCACCTCCACACCCTCGCAGGGTATGTTATGTGCAGCAGATTGATGAATTTGTTTTCCCTTCGGTTCTTGTTTGTGCAGT
TCTTGCTGAGCTCAACTGAC---------CATTTCATGCTCTTCTCTGC---TGCTGCTGCAGGCCTGGCGTGATGCTCC
TGTACCCGCTGTACGCGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGCTGGACGACGAGCAGTGGCTGGCCTACTGGATC
CTCTACTCCTTCGTCACGCTCGTCGAGATGGTCCTCGAGTCCCTCATCTACTGGTAATTAACCAGCAAGAAAATCAACCA
AGCTCATGGCCGCTTTTCTTGATTTCTGCCATGGTTTTGATGTTAACCGTGGTGGCTTATTCTTCTTCTCACTCTCAGGA
TACCGATCTGGTACGAGCTGAAGCTGCTGTTCCTGGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCGGCCTTCATCTAC
GACAGGTTCGTCAGGGAGCAGCTCAGGAAGCACGGCCTCACCAACCACCCCGGCAGCGGCATCAGCAGC---AGCAAGAA
GGAGAACGGCGGC---------AAGTCGTCCTCGCCGTCGACGTCCCCCAAGGAGAAGGAGAACGCCAAGAGCAGGTTCC
TCTCCTTCGGCGCTCCCAAGAAAGACCACTGAAGTAGATTGGGGCAGTAACCAGAGATCCCTGCGGCTAGCTTCTTGGCT
TGTGGTG----TTTTTCTGGTTTGTTTGAGATTTTAGCTTGTGGTCTTGGGAGTATT-ACATGTCTTGTCC-AAAAAAGT
TGTACTAGCACTCCATAGATGAGGCCCTCGGTTGCAGGCTAGCTAGAT----GGTGGCTTGTGGTGTTGTAGTATTATTA
CATATATCTGTCCAGAAAAATGTACC---GAGATTGGAGCAGTAACCAGAGATTTCATCTCATCTCATCCCTCCGGCTAA
GCTAGCTTGTGGTGTTCATTTCTGAGATTTAGCTAGCTGATTTGATGTGAAGCTTACACATTGGATG--GATCAAGTTGA
ACTTTTCATAAGACGACACATGTAAGGCCAG-------------------------------------------------
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>SNPs
-----S-----S------S-------------------------------SSS-SSSSSSSSS----------------S
------S---------------------------------------------------SS--------------------
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---------------------------------------------S--------------------S-------------
--------------------------------------------------------S-----------------------
------------S---------------------S---S--S--------------------------------------
-------S------S----------------------------------------S------------------------
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---S-------S-----S------------S-------------------------------S------------SSS--
----------------------------------------------------------S-------------S-------
-----------------------SS-----------------------------------------S-------------
-S---------------------------------------------------------S-----------S--------
S--------------------------------------------------S--S-------------------------
-----------------------------------------------SSS---------------------S--------
----------------------------------------------------S---------------------------
------S-----------S--S-------------S--S----------SSS----------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
----------S---------S----------------------------------S-------------SSS--------
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---------------------------------------------------------------S----------------
----------S---------------------------------------------------S-----------------
-----------S--------------------SS----------------------------------------------
-S--S-SSSSS------------S----------------------S---SSSS-----------------S-----S--
-------S--------------------------------------------------------S---------------
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--------------------------S------------------S----------S-S-------SSSSS---------
-S--S--------SS----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_1201
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-------------------------------------------------------------CATAGCTTTCCCCTTCCCG
G-------------------------------------------------------------------------------
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>reverse_2513
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--------------------------------ATCCGGGCCCCTACTTAGTT----------------------------
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