>input_sequence_72579
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--------------------------------------------------------------------------ATGGCG
GAGACGGAGTACCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACAACAACCTCCAGCAGGCCTTCAGCCAGTA
CGGCGAGATCCTCGACGCCAAGGTAACC--GACCGACCAACCCCTGTCTCCGATCTGCGCCGATCCGTTCGAATTTCGCG
TCGTGGGCT-----------GTAGATCTGACCCGATCTGG-GGTTTGTGTGGCGGATCTGA-------------------
-CCGGATCTGGTGTGGTGTTTGTGTTTT--GTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGGAGGTCCCGTGGG
TTCGGCTTCGTCACGTTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCG
CAACATCACCGTCAACGAGGCCCAGTCCCGCCGCTCCGGCGGTGGG------------------GGCGGCGGCGG---CG
GCTACGGCGGCCAGCGC---------GGCGGTGGCGGAGGCTACGGC------------------GGCGGCGGTGGCGGC
TACGGCGGCCAGGGCGGCGGCGGCTACGGCCAGGGCGGCGGTGGCGGCTACGGCCAGGGCGGCGGTGGCTACGGCGGCCA
GCGTGGTGGCGGCGGCTA---------CGGCGGT---------GGCTACGGCGGCGGCGGTGGCGGCTACGGCGGCCAGC
G---------CGGCGGCGACTCCGGCGGCCAGTGGAGGAACTGA------------------------------------
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>chr5A_1_TraesCS5A01G015000
CTGGATTAGAAGAAGGTACCCAAGATTGGAGTCGATGGATTGGCGGACTACGAGTTTTTTTATTTTTAAAAAACCAGCTT
GCAACGTAAAAGGACACCACTTATTTGTACCCACCATACCTGGCCATAAGTCGGGCCGGACCAGGCTTCGAGCCAGGCCT
ACTAAAGCCCGTAGCAAAAAAACATAGACCCAGCCCGGCCATTAGCCCTAGATTTTAGGCCCAGGCCCGACCCATCAGAG
GAAACGCCCCGTCGAGCCTCAGGCCTAAAACGCAAAAATGCAAGCCCCGCCCGACATTCGGGCTCAGATTTCAAGCCTAG
GCTCGACCCGCGTGCAAGACCGGGCCGGGCCGGGCCGGGTTTCCCATGGCCATGTATAGTATACTACTCCCTTCGTCCCA
AAATTCTTGTCTTAGATTCGTCTAGATACAGATGTATCTAATAGTAAAACGTGGCTTGATACATTCGTATTTAAACAAAT
CTAATACAAGAATTTTGGGAAGTAATAGAAATATTAGGGGAATTAATGCAGCTCATACCCTTGAATGATTTTCTCAAGAT
TTGTTGTGGTTATTTTTGGGAAGAAAAAAGCAGACCTAAAATTTTCTTGCATTGTTCTTAATAGGGTTAGTTACAGGGGA
AAGCAAACCCAGATTTTTCCATTCGTTGTCTTGGAAAGGAAGACTCGAGGCGTGCGCGTAGCGGGGGAAGGAAATATCTC
GCGGCCACCCACTCCCACTTGGCCGGCCCCGCATATTCCAAACCCCGAGACCCGCATCCTCAGCCGCCCGCC----CGCT
GACGCGTGGGCCCCC----------GATGCGATCCGGGCGGCCACCCACCGCTATAAATGCGTGCCCCCGGCGGGGCAGC
GTCCTCCTCATCGCTCTCGGGGTTGGCTTCTCCTCCCCTTCCGGTTCGGGTTCTGGTTCGGTTCGGGTTCGGTTCGAGAG
AGAGGCCGAGTAGCTAGCCTAGTCTAGGGTTTCGGTAG----------AGAGGAAGT--GAG--------ATCCATGGCG
GAGACGGAGTACCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACAACAACCTCCAGCAGGCCTTCAGCCAGTA
CGGCGAGATCCTCGACGCCAAGGTAACC--GACCGACCAACCCCTGTCTCCGATCTGCGCCGATCCGTTCGAATTTCGCG
TCGTGGGCT-----------GTAGATCTGACCCGATCTGG-GGTTTGTGTGGCGGATCTGA-------------------
-CCGGATCTGGTGTGGTGTTTGTGTTTT--GTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGGAGGTCCCGTGGG
TTCGGCTTCGTCACGTTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCG
CAACATCACCGTCAACGAGGCCCAGTCCCGCCGCTCCGGCGGTGGG------------------GGCGGCGGCGG---CG
GCTACGGCGGCCAGCGC---------GGCGGTGGCGGAGGCTACGGC------------------GGCGGCGGTGGCGGC
TACGGCGGCCAGGGCGGCGGCGGCTACGGCCAGGGCGGCGGTGGCGGCTACGGCCAGGGCGGCGGTGGCTACGGCGGCCA
GCGTGGTGGCGGCGGCTA---------CGGCGGT---------GGCTACGGCGGCGGCGGTGGCGGCTACGGCGGCCAGC
G---------CGGCGGCGACTCCGGCGGCCAGTGGAGGAACTGAGCGGCGGGGCCCTCCAGTTATCGATCTATCTACCAT
C------TCGTCGTCTTCGTCAGCAAGTTATCTTCAGTGTCGTCGTCGTCGTGTTCCTGTGTCAGTCAGTCTTGAGTCGT
GTGTGTCGTTCGGTCCTGTGGTGTTTTTGATCGCGAGCTCGAGTGTCGCTCTGTCCGGGGTTAATTAGAGCTGGTTACGC
GAGGAAGAAACAACATGTGT---TATCTTTCAGTCGGTCGTGT------TC-GTCGGTGATGCAGCAAT-CCCTTCTGTC
ATGGATTGGGATGTGATGTTGGAAT--CCTATGTTTGAAGTCAGTTTAAATGGATGAAGAAAATGCAAGT---GATAGCT
GCGAAATATCCTCCTATGTGTCCTGATGC-TTTTATTCTTTTCTCTCTTTCGTTATGAAGCATCCATTATCTTTTTCTTC
AAGCAAGCATATTGTAGATCTAGTGAAATGTTCTGAAGCATCCACCTTCTGTTTAAGCAACAGATCGCACCAAG------
------CTTGCTGCCATTTCAGTGAGTAATATAAAATTTAGACATTGCGATGTGCATCTCATCCACCTTCTGTTT-----
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-----------------AAGCAACAGATCGCACCAACTGACGATTGCAGT----------ACGCAGAGCTCAATGAGAGT
GCATAACAAAAGTTTCATCATCTATGGTTTGGTTCAAACTTGATCGGATTACATGAGGTAGCCG----------------
-----------------GTGTAACCAATAACAGTAGTGCAGATGGCTAAATGTCCAGAGTTTGGTTGTTGTTTCAGTCGA
GGACATAGATGCGGGAGGCGATGTCCTGGACCAGCCAGTCGAAGCCCTGGAGCAGGCCGTCGCCTGTGTAGGCGCTGCAG
CCGACGATCTTCCAGTGCCGGTCCTTGTTCATCACTTCAAGATTCAGAACCTGGATCCAAAAACTCCACCCGGTTACCAT
CAAACTCGAAG------AACACTAAACAACATGCCAATTATTAGTTTTTTTTAAAATCATCATGAAGCAAAGACCACAAA
CTTGTATGTATATGCTAGGATTATTTTCCG
>chr5D_690
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-------------------------------------------------GCGTGCGCGTAGCCGGGGCGAGAAATATCTC
GCGGCCACCCACTCCCACTTGGCCGGCCCCGCATATTCCAAATCCCGAGACCCGCATCCTCACCCACCCGCCCCGTCGCT
GACGCGTGGGCCCCGCCGTGCGCGTGATGCGATCCGGGCGGCCACCTACCGCTATAAATCTCGCCCCACGGCGGGGCAGC
GTCCTCCTCATCGCTCTCGGGGTTGGCTTCTCCTCCCCTTCCGGTTCGGGTTCTGGTTCGGTTCGGGTCCGA--------
-------GAGTAGCTAGCCTAGTCTAGGGTTTCCGTAGTTCGGAGAGGAGAGAAAGGGAGAG--------ATCCATGGCG
GAGACGGAGTACCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACCACAACCTCCAGCAGGCCTTCAGCCAGTA
CGGCGAGATCCTCGACGCCAAGGTAACC--AACCAACCAA---------------CTCCCAGATCCGTTGGAATTTCGCG
TCCGATTTGCTGTCCGTGTGGTAGATCTGTCCCGATCTTG-GGTTTGTGTGGTGGATCTGA-------------------
-CCGGATCTGG--TGGTTTTTGTGTTTT--GTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGCAGGTCCCGTGGC
TTCGGCTTCGTCACGTTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCG
CAACATCACCGTCAACGAGGCCCAGTCCCGCCGGTCCGGCGGTGGG------------------GGCGGCGGCGG---CG
GCTACGGCGGCCAGCGC---------GGCGGTAGCGGAGGCTACGGC------------------GGCGGCGGCGGTGGC
TACGGCGGCCAGGGCGGTGGCGGCTACGGCCAGGGAGGCGGTGGCGGCTACGGCCAGGGCGGTGGTGGCTACGGCGGCCA
GCGCGGTGGCGGCGGCTA---------CGGCGGCGGCGGCGGCGGCTACGGCGGCGGCGGTGGTGGCTACGGCGGCCAGC
G------TGGTGGCGGTGACTCCGGCGGCCAGTGGAGGAACTGAGCGGCGGGGCCCTCCAGTTATCGATCTATCTACCAT
C------TCGTCGTCTTCGTCAGCAAGTTATCTTCAGTTCCTGTGTCA------------GTCAGTCTGAGTC--GTCGT
GTGTGTCGTTGAGTCCTGTGGTGTTTTTGATCGCGAGCTCGAGTGTCGCTCTGTCCGGGGTTAATTAGAGCTGGTTACGC
GAGGAAGAAACAACATGTGT---TATCTTTCAGTCTT--GGTCGGTCGGTC-GTCGGTGATGCAGCAAT-CCCTTCTGTC
ATGGATTGGGATGTGATGTTGGAATATCCTATGTTTGAACTCGGTTTAAATG---GAAGAAAATGCAAGTCGTCATAGCT
GCGAAATATCCTCCTCTGTGTCCTGATTATTTTTGTTCCTTTCTCTCTACTGTTCTGAAGCATCCATCGATC-TTTGCT-
--------------TAGATCTATTGAAATTGTTCTGTGAATCAGGAA------------------------AAAAAATAT
TCTAAACTTGCTGTCATTCGGACTGATTGCGAG--------------------------CATCCATATTCTAATC-----
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-----------------CTGCATAAGATGCAAAACTTGCTGTCACCATCTTTCACAACTGACACGGAGCACAAGGGAAGT
GTAGAATAAAAATG---TCATTTATGGTTTGGTTCAAACTTGATCAGATTACATACAGATGCCATGAGATGGCCAAAGCA
GCAGCATGCCTATGGCT------------------------------AAATGTCCAGAGAGTTTG-GTTGTTTCAGTCGA
GGACATAGATGCGGGAGGCGATGTCCTGAACCAGCCAGTCGAAGCCCTGGAGCAGGCCGTCGCCCGTGTAGGCGCTGCAG
CCGACAATCTTCCAGTGCCGGTCCTTGTTCATCACTTCAAGATTCAGAACCTGAATCCAAAACTCAACTCCAGTTACCAT
CGAATTCAAAG------ACTA------AACATGTCAATTTAAGAAGACAAAAAG---CATCTTGGAGCGAAGACCACAGA
CTAGTATGTATATGCT--------------
>chr5B_812
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-------------------------GATGCGATCCGGGCGGCCGCCCGCCGCTATAAATGCGTGCCCGCGGCGGGGCAGC
GTCCTCCTCATCGCTCTCGGGGTTGGCTTCTCCTCCCCTTCCGGTTCGGGTTCTGGTTCGGTTCGGGTCCGA--------
-------GAGTAGCTAGCCTAGTCTAGGGTTTCCGTAG----------AGAGGAAGGGAGAGGGAGATCCATCCATGGCG
GAGACGGAGTACCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACAACAACCTCCAGCAGGCCTTCAGCCAGTA
CGGCGAGATCCTCGACGCCAAGGTAACCCTAACCCCCCTTCC------------CCTCCCAGATCCGTTCGAATTTCGCG
TCGTCGGCGC-----------TAGATCTGGCCCGATCTGGTGGTTTCTGTGGCGGATCTGA-------------------
-CCGCGTCTGG--CGGGTTTTGTTCTGTGCGTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGGAGGTCCCGCGGG
TTCGGCTTCGTCACGTTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCG
CAACATCACCGTCAACGAGGCCCAGTCCCGCCGCTCGGGCGGAGGG------------------GGCGGCGGCGGCGGCG
GCTACGGCGGCCAGCGC---------GGCGGTGGCGGAGGCTACGGCGGCGGCGGCGGCTACGGAGGCGGCGGCGGCGGC
TACGGCGGCCAGGGCGGTGGC---------------------------------------------GGCTACGGCGGCCA
GCGCGGTGGCGGCGGCGGCTACGGCGGCGGCGGCGGCTACGGCGGT------------GGTGGCGGCTACGGCGGCCAGC
GCGGCGGTGGCGGCGGCGACTCCGGCGGCCAGTGGAGGAACTGAGCCTCGAATCTC-CCAGTTATCGATCTATCTACCGT
GTCGTCGTCGTCGTCTTCGTTAGCAAGTTATCTTCGGT------GTCGTCGTGTTCCTGTGTCAGTCTGAGTC--GTCGT
GTGTGT-------------GGTGTTTTTGATCGCGAGCTCGAGTGTCGCTCTGTCCGGGGTTAATTAGAGCTGGTTACGC
GAGGAAGAAACAACATGTGTTACTATCTTTCAGTCGGTCGGTCGGTCGGTCAGTCGGTGATGCAGCAATCCCCTTCTGTC
ATGGATTGGGATGTGATGTTGGAATATCCTATGTTTGAACA-AGTTTAAATGGATGAAGAAAATGCAAGT---CATAGCT
GCGAAATATCCTCTCT------------C-TTTGTTCCTTAAATTTCTCTTGTTCTGAAGCATCCATTCAAC-TTTCTTC
AAGCTATAAGGA-----------TTGAATTGCTCTGTGAAGCATGCA------------------------AAA------
------CTTGCTGCCAATTCAGCATAGTCTTTCACATAATCTTGATCTGATGATGTGCTACATTGCTTTGCTGATCTGTG
ATTACTAGCGATTTCAACTTCATGTTCCCGAGTTGCTTAGAAATAAAACTTGATCTGATTAATGGAACTTCAATCCAAGG
ATCTTTTGTGTTCTGTGCTGAATAAGATGCAAAACTTGCCGTCTCCAACGCTATCCAACTGAG-------CAAGGAGATT
GCATAACAAAAGTG---TCATCTATGGTTTGGTTCAAACTT-ATCAAATTACATACATGTTACAAGGCA--GCCAAAGCA
GCAGCATGCCTATGGCTGTGTAACCAATAACAGTGGTGCATATGGCTAAATGTCCAGAGTTTGGTTGTTGTTTCAGTCGA
GGACATAGATGCGGGAGGCGATGTCCTGGACCAGCCAGTCGAAGCCCTGGAGCAGGCCGTCCCCGGTGTAGGCGCTGCAG
CCGACGATCTTCCAGTGCCGGTCCTTGTTCATCGCTTCAAGGTTCAGAACCTGGATCCAAAAACTCAACTCGGTTACCAT
CGAACTCAGAAGACACAACTG------AACATGTCAATTAAAGAAGACAAAGAG---CATCTC-GAGCAAAGACCACAAA
CTAGTATGTATGTG----------------
>chr4D_971
TAGGG---------------------------------------------------------------------------
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------------------------------TTTAGTAG----------CGGGGAAGA--GGA--------AGGCATGGCG
GACGTCGAGTACCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACCAGTCCCTCCAGAACGCCTTCTCCAAGTA
CGGCGACGTCATCGACTCCAAGGTACCG--ATCCCCCGTCTC------------CTCCCCCGATCCGCCCGA--------
---------------------TAGATCTCTAAA-----------TTCGTAGGTGGATCTGTGGTGTTGTGCTTGCGGAAC
CCTGGATCTGA--CGGGTTTGGTGTGTT--TTGGCG--GTGCAGATCATCACTGACAGGGAGACGGGCCGTTCCCGCGGG
TTCGGGTTCGTCACCTTCGCGTCGGACGAGGCGATGCGCCAGGCGATCGAGGCCATGAACGGCCAGGACCTGGACGGCCG
CAACATCACCGTCAACGAGGCCCAGTCCCGCCGCTCCGGCGGAGGCGGCGGCGGCTTCGGCGGCGGCGGCGGCGGCGGCG
GCTACGGCGGCCAGCGTCGTGAAGGAGGAGGCGGCGGCGGCTACGGC------------------GGCGGCGGCGGTGGC
TACGGAGGT---GGCCGCAGCGGC---------------------------------GGCGGCGGTGGCTACGGCAGCC-
--GTGAGGGCGGCGGCGGCTACGGCAGCGGCGGCGGCGGCGGCGGCTACGGCGGCAGCCGCGGCGGCTCCGG--------
----------------------CGGCGGCAACTGGAGGGAGTGAATGGTGGGGCCGCTC---------------------
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>SNPs
SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S----SSS----------
------------------------------------------S-------------------S--S--------------
--------------S----------------------------------------------------S------------
--------------------------------------------------------------------S--SSSSSSSSS
SSSSSSS--------------------------S----------------------S-----------------------
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------------------------------S---S-------SSSSSSSSSSSS--S-S---------------------
----S---S--------------------S--------------------------------------------------
-----------SS----S--------------------------------------------------------------
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-------------------------------------------------------------------------S------
-----------------------------------S--------------------------------------------
---------------------------------S----------------------------------------------
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--------------------------------------SS-SSS-----------------------S-SS-SSS-----
----------SS--------------------------------------------------------------------
----------------------------------------SSS-------------------------------------
---------------------------------------S---------------------------------S------
---------------S-----------S------S-------------S-S---S-------------SSSSS-------
----S-SS-SSSSS--------S------SS-SSSSS-S---SSS-SSSSSSSSSSSSSSSSSSSSSSSSS--S------
----------------------SSSS-SS-S-S-S--SSSSSSSS-SS----SSSSS---------S----SS-------
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-----------------SS---SS----SSS-SSSSSSSSSSS-SSS-S---------------S----S---S------
-------------SSSS----------------------------S--------SSS-SS---S----------------
----------------------------------S-----S---------------------------------------
----------------------------------------------------------------S---------------
------------------------------------------------------------------S-------------
-S-----S----------SS-SSSSSS------S------SSSSSSSSSSSS-SSSS----S--S---------------
--S-------------SSSSSSSSSSSSSS
>forward_376
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------------------------------------GGGTTTCCCATGGCCATGTA------------------------
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>reverse_1298
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-----------------GTTTGTGTTTTGTGCGTGCG-------------------------------------------
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>forward_1177
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-------------------------------------CAACCCCTGTCTCCGATCTG-----------------------
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>reverse_2510
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-----------------------------GCACCAACTGACGATTGCAG-------------------------------
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