>input_sequence_72576
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---------------------------------------------------------------------GAAGGGCTCGC
TCTTGAAGGCCTGGGCGCTC-----CGGCCGGCAATGTCGGCTCTTGTGCCCCCGCCGCCGGCATTCCCGCCCCCGCAGA
TGATGTCGTACGGCGCGGTCGAGAGGGCGGCGGCAACGAGCGGCTCGTACGGTCCGGTGATCGCCATGCTGGCCGTCCTC
GCCGTGCTCGCGGCGGTGGCCGTGGCCGTGGGGCGGTTCTGCTTCGGGCGCCGCGCGCTCGGCCGGGCCGGTGGCCACGA
CCTGGAGGCCTGGGTGGAGCGGAAGTGCGGGCCGTGCGTGGGCGCCGGCATGCACTCCTCCGCCCCCGCCGGCGACCTGG
CGAAGCAGGAGGAGGGCGACGGCACGGCGGAGCTGCAGGAGCAGCCGCCTGAAGGAACGGAGCCAGGGGAGTGCAGTG--
----GCAGTGCTGGTCGGT-------CCTGAGGCCAATTGGTCTTGCTGCACACTGTAAATGGTTCCTTCATTCTTCTCT
TCGAATTTGTGTTCGATTGTTTCAAGTGGTGGTAGCTAGCAATGTCTACGTTTAGTTCCGTATTTGGAGCCTCCA-TTTC
CTCTTAGAATTCCGTGGGAGTGAGGCTCGTAATGTGTGTGCTGATTTGATGACTTGGTGCCTCCAGCAAATGGCAAGCGA
AACTGGGCTGATTTGATGTTTGATTGA-----------------------------------------------------
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>chr3A_1_TraesCS3A01G402900
TCGCGCCTTGGCGCGATCCCTATCTAGTTCTAGTATTATACATGCTAGCTCTAATAGAAGAAGAGGAGGGGCACCTAGGT
TAGACAGTCGACAGGCACTGCCATTGCACGGTA---CGTGGTCAAGGCACCATGACAGGCGTCGCTGTCGAGGATCTCGC
GTATCCCGAGGTGTATCTCATCTCAC-CTCACCTAGCGGCTGATCAACACTCCGGTGCTC-------CTTGCTGGCAGGA
CATGCATTTCGCAAAAAGAAAAATATGAAGAAGAGAGAATGCTCTGGTACCTACGTGAGGCCATTGATGCCCGTCCACCA
ACTGCGGTCTGCGGAAAGCGATCCTGAAGTTACTCCAGCTATAGCCATGACCATAGGCCAGGCCAGGACAGTGTAAAACG
CCGCTGGTGAA---------CGCTGCC---GCTTAACGGTACGAATCGTGAG-AGACGGCCGTGCGTCGCAGCCAAAAGC
GGTCGCCGTGGAGCCAAAACTGGAGACATGCAAGGCAGCAGCTGGAGCTAGAGCTACGCGCTTAAATGTTACTCCTACCA
CCTCCAGGCAGCGAGTG-----GAGTCAAGTGAGCTCGTTTTGGTTGCCTTCTCCGGCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACCAACCTCTCGCTTTCACTCACTCTCAGCCTGAAGGGCTCGC
TCTTGAAGGCCTGGGCGCTC-----CGGCCGGCAATGTCGGCTCTTGTGCCCCCGCCGCCGGCATTCCCGCCCCCGCAGA
TGATGTCGTACGGCGCGGTCGAGAGGGCGGCGGCAACGAGCGGCTCGTACGGTCCGGTGATCGCCATGCTGGCCGTCCTC
GCCGTGCTCGCGGCGGTGGCCGTGGCCGTGGGGCGGTTCTGCTTCGGGCGCCGCGCGCTCGGCCGGGCCGGTGGCCACGA
CCTGGAGGCCTGGGTGGAGCGGAAGTGCGGGCCGTGCGTGGGCGCCGGCATGCACTCCTCCGCCCCCGCCGGCGACCTGG
CGAAGCAGGAGGAGGGCGACGGCACGGCGGAGCTGCAGGAGCAGCCGCCTGAAGGAACGGAGCCAGGGGAGTGCAGTG--
----GCAGTGCTGGTCGGT-------CCTGAGGCCAATTGGTCTTGCTGCACACTGTAAATGGTTCCTTCATTCTTCTCT
TCGAATTTGTGTTCGATTGTTTCAAGTGGTGGTAGCTAGCAATGTCTACGTTTAGTTCCGTATTTGGAGCCTCCA-TTTC
CTCTTAGAATTCCGTGGGAGTGAGGCTCGTAATGTGTGTGCTGATTTGATGACTTGGTGCCTCCAGCAAATGGCAAGCGA
AACTGGGCTGATTTGATGTTTGATTGATACTCAAATCGCCGTGTCTAAAAAAAAGTATCTGCCGTGTCTCATGCATGATA
GGTACTTATACACACATACAT--------GTACTCTCACTCACTACCAGGAGTAAGAGCATATCAAGCCGCAAGTTGCTA
ATTTAGACCCCTAAACGCCAGCGAATGCGCCCGTCCACAGGCATTGACCGGTCACATCTAAAAATTTGCTTCGCATAACC
AGACATCTTAATTAGCAAACCTCAAATAC------------------------------------------AAAAACATG
CAACGTGAACGGAAACGTTGCAACAACTTCTTTCGACTATTACCTCAAGACATGCCATCGGACTCTCAAAATTTGACATG
TTACATCTACATACTGGCTATGCAGAAAATCATCCATCGCTTTCCTTGCCCTTCCCGACACTCTTGCCGTTCTTCTCACG
GAAGTAGCGCTCAAAAACGCAAAATGGATTCAGCCGGATCTGCTCGTCGCCTGAGCTGAGCTACCCGTTGCTGTCCTCTT
TCTCCTCCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGACCGCCGAATTTTGCTCCCGGGCGAG
GGGCACGCGTGTTACCTCGTTGCCGCTACTTCAGGATGCGGGCACAAATGACTTCCTCCTCCATAGTAGCGCGCGCCACC
GCATCCGTTGACTCCGCCGCCGCCATGTCGGCAGCGAGGTGTGCCTCGGCCAACCTTATCCTCTCCTTGCTAGCCAGGCC
GTGTAGGACTCATACTCCGGCGGACCGAAGATGGTGA
>chr3D_83
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--GACGGTCGACAGGCCCTGCGATTGCACGGTAGTACGTGGTCAAATGCGCC------GCGTCGCTGTCGAGGATCTCGC
GTATCCCGAGGCGTATCTCATCTCACTCTCACCTCGCGGCTGATCGACGCTCCGGTCCGGTGCTCGTGTCGCTGGCGGGA
CATGCATCGTCCT-------------------GAGAGAATGCTCTGGTGCCTACGTGAGGCCATTGATGCCCGTCCACCA
ACTGCAGTCTGCGGAAAGCGACCCCGAAGTTACTCCAGCTATAACCA-----------CAGGCCAGGACAGCGTAAAACG
CCGCTGGTGAA---------TGCTGCTGCTGCTTAACGGTACGAATCGTGAGGAGACGGCCGTGCGCCGCAGCCAAAAGC
GGTCGCCCTCCCG-------TGGAGACATGCAG--------------------------GCTGCACTTATTAAATGTCGC
A-TCCAGGCAGTGA--------GAGTGGAGTGAGCTCATTTTCGTTGCTCTCTCCGGGCAAAGCTCCTTCCCACTCGCTC
GCTCG---------------------------------------------------------------------------
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-------------------------------------------------------------CTCGGCCTGAAGGAGCCGC
TCTTGAAGGCCTGGGCGCTAGCTCACGGCCGGCAATGTCGGCCATTGTGCCCCCGCCGCCGGCATTCCCGCCCCCGCAGG
TGATGTCGTACGGCGTGGCCGAGGGGGCGGCGGCAACGAGCGGCTCCTACGGTCCGGTGATCGCCATGCTGGCCATCCTC
GCCGTGCTCGCGGCGGTGGCCGTGGCCGTGGGGCGGCTCTGCTTCGGGCGCCGCGCGCTCGGCCGGGCCGGCGGCCACGA
CCTGGAGGCCTGGGTGGAGCGGAAGTGCGGGCCGTGCGTGGGCGCCGGCGTGCACTCCTCCGCCCCCGCCGGCGACCAGG
CGAAGCAGGCGGAGGGTGACGACACGGCGGAGCTGCAGGAGCAGCCGCCTGAAGGAACGGAGCCAGGGGAGTGCAGTGGC
AGTGGCAGTGCTGGTCGGTCCTGACCCCTGAGACCAATTGCTCTTGCTGCACACTGTAAATGGTTCCCTCATTCTTCTCT
TCGAATTCGTTTTGGAATTTTTCAA---GTGGTAGCTAGCAATCTCTACGT--AGTACCGTATTTGGAGCCTACGTTTTC
CTCTTAGAATTCCGTGGGAGCGAGAGTCGTGATGTGTGTGCTGATTTGGTGATTTGGAGCCTCCAGCGAATGCCATGCGA
AACAGGGCAGATTTGATGTTTGATTGATGCTCAAATCACCGTGTCTAAAAAATA-TATTTGCCGTGTCTCATGCATGATT
GGTACTGATACACACATACAGGTACAGAGGTACTCTCACTCGAGCATCTAC--------------AGCCGCAAGTTGCTA
ATTTGGACCCCTAGACGCCAGCAGACGCCCCGTCTGCCGA-CACTGGTCGGTCACATATCAAATTTTGCTTCGCACAGTC
-GACACCTTAATTAGCAAACCTTAAATTCATATAAAGACATGCAACCAATTAGCAAACCTCAAATTCATAGAAAGACATG
CAACGTAAACGAAAACGATGAAATA-------------------------------ATCGGGCTATCAAAATTTGACATG
TTATATCTTCGTACTAGCTATGGAGAAGATCATCCATGATTGTCCTTGCCCGTCCGAGCGCCCTTACCGCTCTTCTCGCG
AAAGTAGCGCTCGAAAATGCAAAATGGATGCAGCCAGATCTACTCGTCATCGGACCTGAGCGACC---------------
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>chr3B_83
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--GACGGTCGACAGGCCCTGCGATTGCACGGTA---CGTGGTCAAGTGCGCC------GCGTCGCTGTCGAGGATCTCGC
GTATCCCGAGGTGTATCTCATCTCAC-CTC-----GCGGCTGATCAGCACTCCGGTGCTC-------GTCGCTGGCAGGA
CATGTATCGTCCT-------------------GAGAGAATGCTCTGGTACCTACGTGAAGCCATTGATGCCAGTCCACCA
ACTGCGGTCTGCGGAAAGCGACCCCGAAGTTACTCCAGCTATAACCATG-----------GGCCAGGACAGTGTAAAACG
CGGCTGGTGAATGCTGCTGCTGCTGCTGCTGCTTAACGGTACGAATCGTGAG-AGACGGCCATGCGCCGCAGCCAAAAGC
GGTCGCCCTCCCG-------TGGAGACATGCAGACGCAG-----------GAGCTACCCGCTGCACTTATTAAATGTTGC
G-TCCAGGCAGTGAGTGGAGCGGAGTGGAGTGAGCTCATTTTCGTTGCTTTCTCCGGGCAAAGCTCCTTCCCCCTCGCTC
GCTCG---------------------------------------------------------------------------
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-------------------------------------------------------------CTCAGCCTCAAGGAGTCGC
TCTTGAAGGCCTGGGCGCTAGGTG-CGGCCGGCAATGTCGGCCATTGTGCCCCCGCCGCCGGCGTTCCCGCCCCCGCAGA
TGATGGCGTACGGCGTGGCCGAGGGGGCGGCGGCATCGAGCGGCTCGTACGGTCCGGTGATCGCCATGCTGGCCGTCCTC
GCCGTGCTCGCGGCGGTGGCCGTGGCCGTGGGGCGGCTCTGCTTCGGGCGCCGCGCGCTCGGCCGGGCCGGCGGCCACGA
CCTGGAGGGCTGGGTGGAGCGGAAGTGCGGGCCGTGCGTGGGCGCCGGCGTGCACTCTTCCGCCCCCGTCGGCGACCAGG
CGAAGCAGGAGGAGGGTGACGACACGGCGGAGCTGCAGGAGCAGCCGCCTGAAAGAACGGAGCCAGAGGAGTGCAGTGGC
AGTGGCAGTGCTGGTCGGT-------CCTGAGACCAATTGCTCTTGCTGCGCACTGTAAATGGTTCGCTCATTCTTCCCT
TGGAATTCGTTTTGGAATTTTTCAAC---TGGTAGCTAGCAATGTCTACGT--AATTCCGTATTTGGAGCCTCCATTTTT
CTCTTAAAATTCCGTGGGAGTGAGACTCGTGATGTGTGTGCTGATTTGATGATTTGGAGCCTCCAGCGAATGGCATGCGA
AACAGGGCTGATTTGATGTTTGATTGATACTCAAATCGCCGTGTCTAAAAAATA-TATTTGCCGTGTCTCATGCATGA--
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS---S----------S----S------------------------SSSS-SSSSSSS----------------------
----------------------------------S--------------------------------S-S----------
-------SSSS-SSSSSSSSSSSSSSSSSSSS------------------------------------------------
---------------------S--S------------------S-----SSSSSSSSS----------------------
--------------------S-----S---------------------------------------S-------------
-------S-SSS-SSSSSSS------------SSSSSSSSSSSSSSSSSS-------S----SS-S-SS-SSSSSSS-SS
SS---------S--------------SS---------S----S-----S--------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------SS----
-------------------S----------------------SS------------------------------------
---------------S--S----S--------------------------------------------------------
------------------------------------S----------------------------------S--------
-------------------------------------------------S---------------------------S--
----------------S----S----------------------------------------------------------
--------------------------------S-------S--------------------------S------------
-------S--S--S--S-S------SSS-----------------------SS---------------------------
------------------------S-----S---------------------S----S---------S-------S----
---S------------------------------------------------S-S---S--------------------S
------S-------------S--------------------SSSSSSSSSSSSSSSSSSSSSSSS---------------
----S--------S--------SS-S--S--SSSSSS-SSS--S--SS---------S-S---S-----------S-SS-
S----S----------------S----S----------------------------------------------S-----
------S----S-----S--S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--S---------------
---S----S-S----S------S----S---------SSS-S---------S---SSS-S-S---S---S-------S--
S-----------S----S-----------S-----S-----S------SS-S--S------S---SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_517
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-----------------AACTGGAGACATGCAAGGCA-------------------------------------------
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>reverse_2042
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-----------------------------------------ACCTCAAGACATGCCATCGG-------------------
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