>input_sequence_72548
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-----------------------------------------------------GCACCGAGACTGCTAGC-TAG--CTAT
AATCTCCTCGGCTTCTTTCTCCGTCCCCTCGGCCGGCCTGCCACCCGATCGTTCCTGATGTCCGGCACCGTGTGCTCCAT
GTGCGGCGACGTCGGCTTCCAGGACAAGCTCTTCCGCTGCGCCCGTTGCCGCTGCCGCTTCCAACACTCGTACGTATTTT
TCTCCTACTGATAGCTCTTTGAGGGAGTCTCTTATTCGGGGTACTGTCAAGATTTTGATAGGTGTTAATGAGTCCCATGT
TAATTTGTTTCCCTGCATTCCTACAAGCAGCTATTGCACGAACTACTACGGCGACGCGGCCCCGGCTGACGCGGGCGCCG
GCGTGTGCGACTGGTGCCTCAGCGACGACCCCCTCGTGAAGAACAGGCGCCCTTCGGCGCCGCCGGCCATGCAGCACCGC
GGTCCGCCGACCGGGATGGGCTGCGGCAAGGTCAAGGTGACCGGCGGCGGCGAGCAGGAGGGCGGCCGGAGAGTGGCCAA
GGCGGCCGTCCGCAGGTACAAGCTCCTCAAAGACGTCCTGTGCTAGCTAGCTGGTGCATGCATGGTCCTGGGTCACCGCA
CTCCTTTCCTTAGATCGGGACCTCGTCATCATGTGTACTAAAAAACGATGCTGTTTAATTAAGTAGTCGATAGTCG----
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>chr6A_1_TraesCS6A01G250100
ATTTTAAAGAACATGGACGGGATTTGTAGTGCTTTTCTGGTATAGGAAATCCAACCATCTCATAATTAAATGAGAGGTGA
TGGTCGGTTGAACAACACACAATCGAAACACATCGACCACCTTTTTCCTAGTTTTTACACCTGTCCTAAGTTCTTTCTCT
CTCATTCTTCGTTCTTCGTGTTGAAGAGCAACGATCCTCGAGGCTTTAGGAGCGGTTAGACCGACTTAGAGCAGCCCATA
GCCACCACACGTCCAAACGGTGTCGCTCGCGGACGTGTAGGGTTTTCGGGCCTGCAAAAGCGCTTGTCGGAGTGCTTGTG
CACTGCACTTTCGGCCGGGTCTTATTTGAGTGAGCCGCGGTGCATCACTCCATCATCAAGAGTACACAGTGGCATGTTGG
TGTACCAACACTATCTAAAGGCGTGATCTTGGATAACAAGGGACTAATAAATCAAATGTCAAATTCCGAATCAAAATTCA
CGGGACTAATAAATCAGAACAGATGTAGTATTTATTTTTCAGCACTTAAGTTTGTTGTATGGTTTGGTTGTTTGTATACC
TAAACCGGGCAAAAAAAAGGTCTAGAAACGTACTCCACGGATAACCAGTGACTGGTCAGATCAGTGACGGTCAACCAGTC
ATAATTTGAGTAAAACGTTTTCTCTATTTTCTTTTTAAAATA--AATGAATGGCTTTTCCCTCTCTGGATATCAACCAGG
TAACCGACCCAGTAACTCCGGCCACTCCTTTTCTTTTTCCGCTTTGCGCGCAGCACGCAC-TCCACATGGACACGTGGAC
TGTCTCCCACCCGCCCGGCTCCGTACCCAAA-------CTCGCCGTTGCGGCCCCCACCCCGCGGTCTCACCTTCACGGT
TCCGCTGCCACGATCACGGTCTCATCTTCTCCTATCGCCTCCTCCCAGTATTTAAAGCC---CTTCTTCTTCGCTGCACA
ATCCACATCGATTCCTTCCTGCCACTCCTTCCTCGCATGCCCCCTGAGTTCCTGCACCGAGACTGCTAGC-TAG--CTAT
AATCTCCTCGGCTTCTTTCTCCGTCCCCTCGGCCGGCCTGCCACCCGATCGTTCCTGATGTCCGGCACCGTGTGCTCCAT
GTGCGGCGACGTCGGCTTCCAGGACAAGCTCTTCCGCTGCGCCCGTTGCCGCTGCCGCTTCCAACACTCGTACGTATTTT
TCTCCTACTGATAGCTCTTTGAGGGAGTCTCTTATTCGGGGTACTGTCAAGATTTTGATAGGTGTTAATGAGTCCCATGT
TAATTTGTTTCCCTGCATTCCTACAAGCAGCTATTGCACGAACTACTACGGCGACGCGGCCCCGGCTGACGCGGGCGCCG
GCGTGTGCGACTGGTGCCTCAGCGACGACCCCCTCGTGAAGAACAGGCGCCCTTCGGCGCCGCCGGCCATGCAGCACCGC
GGTCCGCCGACCGGGATGGGCTGCGGCAAGGTCAAGGTGACCGGCGGCGGCGAGCAGGAGGGCGGCCGGAGAGTGGCCAA
GGCGGCCGTCCGCAGGTACAAGCTCCTCAAAGACGTCCTGTGCTAGCTAGCTGGTGCATGCATGGTCCTGGGTCACCGCA
CTCCTTTCCTTAGATCGGGACCTCGTCATCATGTGTACTAAAAAACGATGCTGTTTAATTAAGTAGTCGATAGTCGTTGT
ACCTAGCTAGCTGGCGAGGTTCTGCTTCCATATCGATCCTTGTGTGCAAATGTCGGCATGTCACAATGAGATCTACTTC-
---TGTAAATATGCGCTGCTACTCTTTATCTCTGTCATCAACTGCGTGTTGTCGTGTGTGTTAAA---------------
--TTCCACAAGTGTATGATCAGTGGCAGTAAGCA-----A----------------------------------------
-------------------------------------------------------------TACATGTGTTCGTCAAATG
AAGATGCCGTGCGTCTTCATTTCTGGCCA--------------------------GTGATCGATCGATTCTCTTGGCAAG
AAATGATGTACTCCCTCCATTTAAAAATAAGTGTTGTGATTTTTGTTCAAATTTAAACTAAAACCACGAT----------
--GATGTATGGTTTAGTTCGACATTCTATGTGTTACTGTGTA--AGCTAGCCCGCCCTGCTCAACCCTTGGGCATCTCTC
CATCACCTTGCAGACATCAACCACA--------TCATAGTTGA-GACTTCAATCCCTTCATGCGGTTGAACTGTTCATTT
TCTCCACTAGGATGATGTAGAGCTCGGAAAACTCTAGAAGGTGATCACGTTGCATGCTCAGCTCCCTCGCCTTTTTCAGT
AGGTGGTGCCGATGTATTGGAATCAAATCAGGGGCTCGTACGCAAAGCCTATAAAGTGGCCGACACGCCCATGTTAAAGC
AAGCCTCAAGTCCCCACTTGCAGCTTAGCCTCGAATGGCAGATCTTTGTGGGAGCAAGAATCCACGGAGCGCCCCTCCCG
GTGTCCCGGTTTCACCTTGTCGATGAGCCAAACCAATCTGGTCGACGGTATTACCGTTTTTATTAACAAGTCTCAGGTCT
TCCTATTCTCATTTATTAAAAGAATCGGTTTCGAAACAGTTTAGCGCCCGCCACACGTC---TAGTCGTCTCTTACATAT
TTTTGAAAAACCTTTTTTTAAGTACGCCAATAGCGTACCATATTTTTATAGAAAAGAGAATAAGATTTACAAGAGATATC
TTACGAATGGATGCACACATTCATTATCAGGCAACGCCCGAAAACAACCCACACC
>chr6B_580
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-------------------GTCTAGAGACGTGCTCTT-GGATAACCAGGGACCGGTCAGATCGGTGACAGTCAACCAGTC
ATAATTTGGGTAAAACGTTTTCTCCATTTTCTTTGTAAAATA--AATGAATGGCTTTTCCCTCTCTGGATATCAACCAGG
TAACCGACCCAGTAACTCCGGCCACTACTTTTCTTTTTCCGCTTTGCGCGCAGCACGCACGTCCACATGGACACGTGGAC
TGTCTCCCACCCGCCCGGCTCCGTACCCAACCAAAAACTTCGCCGTTGCGGCCCCACCA-CGCGGTCTCACCCCCACGGT
TCCGCTGCCACGATCACGGTCTCATCTTCTCCTATCGCCTCCTCCCAGTATTTAAAGCC---CTTCTTCTTCGCTGCACA
ATCCACATCGATTCCTTCCTGCCACTCCTTCCTCGCATGCCCCCTGACTTCCTGCACCGAGACTGCTAAGCTAGCTCTGT
AATCTCGTCGGCCTCTTTCTCTGCCCCCTCGGCCGGCTTGCCACCCGATAGGTCCTGATGTCGGGCACCGTCTGCTCCAT
GTGCGGCGACGTCGGTTTCCAGGACAAGCTCTTCGGCTGTGCCCGCTGCCGCTGCCGCTTCCAGCACTCGTACGTACCCA
TCTTCTC------GCTCTTTGAGAGAGTCTTG--TTCGAGACACTGCCAAGATTTTGATAGATGTTGAT-----------
----TTGTTTCCTTGCATACCTACAAGCAGCTATTGCACGAACTACTACGGCGACGCGGCCCCGGCCGACGCGGGCGCCG
GCGTCTGCGACTGGTGCCTCAGCGACGACCCCCTCGTGAAGAACAAGCGCCCTTCGGCGCCGCCGGCCATGCAGCACCGC
GGTCACGCGACTGGGATGGGCTGCGGCAAAGTCAAGGTGACCGGCGGCGGCGAGCAGGAGGGCGGCCGGAGAGTGGCCAA
GGCGGCCGTCCGCAGGTACAAGCTCCTCAAAGACGTCCTGTGCTAGCTAGCTGGTGCATGCATGGTCCTGGGTCACCGTA
CTCGTTTCCTTAGATCGGGACCTCGTCATCATGTGTACTAAAAAACGATGCTGTTTAATTAGGTAGTCGATAGTCGTTGT
ACCTAGCTAGCTGGTGGGGTTCTGCTTCCATATCGATCCTTGCGTGCAAATGTCTGCATGTCACAATGAGATCTACTTCC
GCATGTAAATATGTACTGCTACTCTTTATCTCTGTCATCAACTGCGTGCTGTCGTGTGTGGTCAGGACTTTTGAACATGT
ATTTCCACAAGTTTATGATCAGTGCCAGTGCCAGTAAGTA----------------------------------------
-------------------------------------------------------------TATATGTGCTTGTGCAATG
CACACTCCCTTAAATAAGTTGAT---------------------------CTCGTGTGATCAATCGATTCCCATCCCCAG
AAATGATGTACTCCTTTCGATCCGAATTAATTGACGCAGCCTCTATACAATATGTCAAAGGGAGTAGTTGTTCCTTCAAC
TCAATCTATGGTTTAGTTTGACATTCTATGTGTTACTGTGTGTTAGCTAGCCCGCCCTGCTCAACCCTTGGACATGTCTC
CATCACCTTGCAGACATGAACCACAATACCACATCATAGTTGAAGACTTCAATCCCTTCATGCGGCTGAACTGTTCATTC
TCTCCACTGGGATGATGTAGAGCTCGGAAAACTCTAGAAGGTGATCACGTTGCATGCTCACCTCCCTCGGCTTTTTCAGT
AGGTGGTGCCGATGTATTGGAATCAAATCAGGGGCTCGTACGCAAAGCCTATAAAGTGGCCGACACGCCCATGTTAAAGC
AAGCCTCAAGCCCCCACTTGCAGCTTAGCCTCGGATGGCAGATCTTTGTGGGAGCATGAATCCACGGAGCGCCCCTCCCG
CTGTCCCGGTTTCACCTTTTCGACGAGCCAACCCAATCTGGTCGACGGTATTGCCGTTTTTATTAACAAGTCTCAGGTCT
TCCTATTCTCATTAATTAAAAGAATCGGTTTCGAAACAGTTTAGCGCCCTCCAGACGACATATAGTCGTCTCTTACATAT
TTTTGAGAAACCTTTATTTAAG----------------------------------------------------------
-------------------------------------------------------
>chr6D_607
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----------------------------------------------AGGGACCGGTCAGATCAGTGACAGTCAACCAGTC
ATAATTTGAGTAAAATGTTTTCTCCATTTTCTTTTTATAATATAAATGATTGGCTTTTCCATCCCTGGATATCAACCAGG
TAACCGACCCAGTAACTCCGGCCACTACTTTTCTTTTTCCGCTTTGCGCGTAGCACGCACGTCCACATGGACACGTGGAC
TGTCTCCCACCCGCCCGGCTCCGTACCCAACCAAAAACCTCGCCGTTGCGGCCCCCACCCCGCGGTCTCACCCCCACGGT
TCCGCTGCCACGATCACGATCTCATCTTCTCCTATCGCCTCCTCCCAGTATTTAAAGCCTTTCTTCTTCTTCGCTGCACA
CTCCACATCGATTCCTTCCTGCCACTCCTTCCTCGCGTGCCCCTGA-----CTGCACCGAGACTGCTAGG-TAGCTCTAT
AATCTCCTCGGCTTCTTTCTCCGTCCCCTCGGCTGGCCTGTCACCCGATCGCTCCTGATGTCCGGCACCGTGTGCTCCAT
GTGCGGCGACGTCGGCTTCCAGGACAAGCTCTTCCGCTGCGCCCGTTGCCGCTGCCGCTTCCAACACTCGTACGTATTTT
TCTCCTACTGATAGCTCTTTGAGGGAGTCTCTTATTCGGGGTACTGTCAAGATTTTGATGGATGTTAATGAGTCCCATGT
TAATTTGTTTCCCTGCATACCTACAAGCAGCTATTGCACGAACTACTACGGCGACGCGGCCCCGGCCGACGCGGGCGCCG
GCGTGTGCGACTGGTGCCTCAGCGACGACCCCCTCGTGAAGAACAGGCGCCCTTCGGCGCCGCCGGCCATGCAGCACCGC
GGTCCGCCGACCGGGATGGGCTGCGGCAAGGTCAAGGTGACCGGCGGCGGCGAGCAGGAGGGCGGCCGGAGAGTGGCGAA
GGCGGCCGTCCGCAGGTACAAGCTCCTCAAAGACGTCCTGTGCTAGCTAGCTGGTGCATGCATGGTCCTGGGTCACCGTA
CTCGTTTCCTTAGATCGGGACCTCGTCATCATGTGTACTAAAAAACGATGCTGTTTAATTAGGTAGTCGATAGTCGTTGT
ACCTAGCTAGCTGGTGAGGTTCTGCTTCCATATCGATCCTTGTGTGCAAATGTCGGCATGTCACAATGAGATCTACTTC-
---TGTAAATATGTGCTGCTACTCTTTATCTCTGTCATCAACTGCGTGTTGTCGTGTGTGGTCAGTACTTT-GAACATGT
GTTTCCACAAGTGTATGATCAGTGGCAGTAAGTATATACTCCCTCCGTTCGGATTTACTTGTCATAGAAATGGATATATC
TAGACATTTTTTAATTCTAGATACATCCATTTCTGCGACAAGTAATTCGGGACGGAGGGAGTACATGTGTTCGTCAAATG
CAGACGCCCTTCAAATAAGCTGATGGATCGATTCTCTCCCCTTATATTTGCTCGCATGATCGATCGGTTCTCTTGGCCAG
ACATTATGTAGTTGTTTGTTCG--------------------------------------------------------AC
TCGATCTATGGTTTAGTTCGACATTCTATGTGTTACAGTGT--TACCTATCCCGCGCTGCTCAACCCTTGGGCATGTCTC
CATCACCTTGCAGACATGAA--------CCACATCATAGTTGAAGACTTCAATCCCTTCATGCGGTTGAACTGTTCATTT
TCTCCACTAGGATGATGTAGAGCTCGGAAAACTCTAGAAGGTGATCACGTTGCATGCTCAGCTCCCTCGGCTTTTTCAGT
AGGTGGTGCCGATGTATTGGAATCAAATCAGGGGCTCGTACGCAAAGCCTATAAAGTGGCCGACACGCCCATGTTAAAGC
AAGCCTCAAGTCCCCACTTGCAGCTTAGCCTCGGATGGCAGATCTTTGTGGGAGCAAGAATCCACGGAGCGCCCCTCCCG
GTGTCCCGGTTTCACCTTGTCGACGAGCCAACCCAATCTGGTCGACGGTATTGCCGTTTTTATTAACGAATCTC------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS-------S----S---SSS----------S---S---------------S-----------
------------------------S-------------------------------------------------------
--------------------------S-----------------------------------------------------
------------------------------S-----------------------------------------SS------
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-----------------------------------------------S---------------------S----------
---------------------------------------------------S----------------------------
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------------------S-----------------------------------------------S-------------
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------------------------------------------------------------------------------S-
---S---------------------------------------------------------S------------------
--------------S-----------------------------------------------------------------
-------------S----------------------------------------------S-S-S---------------
--------------------------------S-----------------------------------------------
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S---S---S-S-SSS-SSS--SS---SSS------------------------------------------------S--
--------------S-S-S--SSS--S---S--SS-SSSSS-S-S-S---SS-SSS-SSSSS-SS-SSSS----------
-----S-----------------------------------S---------------------------------S----
-----------------S--------------------------------------------------------------
---------------------------------------------------------------------S----------
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---------------------------------S----------------------------------------------
-----------------------S-------S--------------------S---------------------------
-------------S-----------------------------------S---S---S----------------------
------S--------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_361
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---------------------TTATTTGAGTGAGCCGCGGT---------------------------------------
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>reverse_2009
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--------GTGCGTCTTCATTTCTGGCC----------------------------------------------------
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