>input_sequence_72459
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------------------------------------------------------------------ATGGCCGCGCCGAC
CGTGCTGGCGCTCGCCCTCGCCGTCCTCCTCCTCCCGGCGGCGGCGGCGG------GGCCGCCGCCGGGGCGCGCCCCGC
CGGGCGCCAGCCCGCTCGTGACCACGTGCAATGAGGGGCCCTTCGCGGCGCACTGCGTCAAGGAGCTGGGCCCGCGCCTC
CTCGACATCCAGACCGCGCTGGCGTCGGTCTCGCCGCGGGGCGCGCTCATCGCCGGCGCGCCGGGGACGGTGGACTTCTC
GGCGCTCGTCGCCGTGGCCATGGAGGCGGCCACGGAGGCCGGCGCGGTGGCGACCACCATCTTCGAGGGCAAGCTCCCCG
GGTTCAACACCTCCGTGCCGGACTTCAAGGTCTGCCTCAGCAACTGCAGCGTCACCATGAAATCCGCCATGAAGAAGATC
CACGGCGCCACGGCCGCCTTGAAGGTCCACGCCCACCTGGTCGCCAAGGTGCTCGCCGACCGGGCCATCGGCGACGTGTC
GGCCTGCACCATCAGCTGCAAGAACCTCACCGGCGACGTCAGGCTCATCCTCGAGGCCAGCCTCGTCGAGTTCCAGAAGA
TGATCAGGATCTCCGTCAACTTCCTCACCAAGATCGCGGCCAAGACTCCGCCCGGCCCTCTCCCTCCCCTCCCTCCCCCG
GTGCGCCGGCCCTAG-----------------------------------------------------------------
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>chr5D_1_TraesCS5D01G507400
GAGACACCATGCCTATCTCTGGAATGCTTAATCCTTGTTTTGTCCTCAGTAACAAACAAAATTTAATATGAATGTGGTTT
TACTGAACTTAAGTCAGTTGAGATTTTCTTATATCGACATTATGATTCGTGTAGGGGTGGGGACGGGGTTCGATGTGAGA
TTTGACGGCTAGCACCACCGACTTAAGAAAAATTTCGACAACTCAGATGAAGAATGTGACCCGCAATTTACTTGTTTGCA
TAGCAGCTGGAGTACATTGAGGACCGTAGCCAGAATTCCTTACTAAGGGCTCATTTGG--TTTGCGGGGTCTCCAAATCA
AGGGAAAATGAAAAGTAAATGATTTAGATGCCCTGTCCAATCCAATCCTT------------------------------
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-------------------------------------------------------------TAGAATTTTCCATGGGGTC
TCACCTAATGCCAGGAATTCTTAGGAATTACGCCTATATGAACACAATCATAAGAAATAGCGTACACCTAATGCCAGGAA
TTCATGTGAAACGACTGTCATAGTAGATAGCGGGAAAAACCATGGTTCAAAATCACATTGGAATCCTCCAAAAAGAATCT
ATATATACACCGAATGAGCCCTAAAATCGTCACGATCGAGTTCGATCAATTGCATTGCATGGTGCCAT----GCACGTCC
ATGCCCTCCTT-TGGTGCCCTGACGCGGTCACCATAGAAACAAGTCGCAAGAACGCGTGCATGCGCATGCACCAATTGGC
AACAAGATCGAGCACAACAGGACTCCCGAGACAGTCGCGCTTACTCCAGTAGTCG-----AGATCCGGCACTCCCGCTGC
TCGACCACTGATCCCCCGCTGGTCATGGCCGCGCGCATGCACCGTCGGAAAAACCTCCCAGCCGCACCGACGACGAGCAC
CAAGAACCACTCCCTGGCAGCGCGAGCAACCCCACGGACACATAAATATCCGGGCGTTCCATCGCTCCAGCACACCACAA
ATCAAGAGCTCAG---GCCGACAGAAACCACAGAGGCTCTCGATCCAATTTTCCAAGCTGAAGGAAATGGCCGCGCCGAC
CGTGCTGGCGCTCGCCCTCGCCGTCCTCCTCCTCCCGGCGGCGGCGGCGG------GGCCGCCGCCGGGGCGCGCCCCGC
CGGGCGCCAGCCCGCTCGTGACCACGTGCAATGAGGGGCCCTTCGCGGCGCACTGCGTCAAGGAGCTGGGCCCGCGCCTC
CTCGACATCCAGACCGCGCTGGCGTCGGTCTCGCCGCGGGGCGCGCTCATCGCCGGCGCGCCGGGGACGGTGGACTTCTC
GGCGCTCGTCGCCGTGGCCATGGAGGCGGCCACGGAGGCCGGCGCGGTGGCGACCACCATCTTCGAGGGCAAGCTCCCCG
GGTTCAACACCTCCGTGCCGGACTTCAAGGTCTGCCTCAGCAACTGCAGCGTCACCATGAAATCCGCCATGAAGAAGATC
CACGGCGCCACGGCCGCCTTGAAGGTCCACGCCCACCTGGTCGCCAAGGTGCTCGCCGACCGGGCCATCGGCGACGTGTC
GGCCTGCACCATCAGCTGCAAGAACCTCACCGGCGACGTCAGGCTCATCCTCGAGGCCAGCCTCGTCGAGTTCCAGAAGA
TGATCAGGATCTCCGTCAACTTCCTCACCAAGATCGCGGCCAAGACTCCGCCCGGCCCTCTCCCTCCCCTCCCTCCCCCG
GTGCGCCGGCCCTAGATCGCCGGCATGCCACGAGCAACTCGGCTCAGTAACAATGGATAAAGGCTCAATAACGTGGGATT
CCTTTTGATCCTCAGTTTAGTTTTTCATAGTTTCTTTCGTGTTTAGTTTAGT------------------TTCATGTTTT
GTTTCCTTCTTTTGGTACGGATCCTCTTCAATTTGACTGTAGTCGTTAAATGTTGGGAATAAAATGGAGTCTCATTATAG
TTGGTTTAAATTTCGTATCTGCTCACAGGTACCAGTGCAAATGTAGTACAGTACGTTGGCTAATTCTC-GAACATAAAAA
ATGTAGCACTTCAATGCATCTGAAATCATGAATGTGTGCTCATTCGTGCGAAATGCACAAATTGATACTCCCTCCGATAC
ATCTGTTAAAGCAAC---------AAGTA-------------------ATATGGATCAGAAGGAGTACATAAACTTTGTG
ACTTATTTTTTCATACTATTTTGGCACAAATCATGTTAAACTGACAGTAGC-----------------------------
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--------------------------------------TAACTAAGATGTTTCATGAGAGTCCAGCTCCCGCCCAAGGAG
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----AGGAATAAAATGGACTGTTCTTTCTTGTCTACTCAATACTTATTTTTTGCAGGGTGTCTACTCAATACTTGTTGTG
GCACCCCTAAAAAAACTTGTTCTAGCTTCTGCAATCTTCGTAAATAAATAAAGCTATGACTCAAAACCAGAATCTGGTCC
CTCTAGCTTTCGGTTCATGCCTTGACTTCCTTGTGATTCAATATGTGAAAGACACGATTATTGTGATGTCTGCTGCCCGT
GTGTGAACAACAAGTTGTGTGTTTTTTTGTTTTTTGCGGAAAGTGTGAGTAACAAGTGAGTCACCTAAAAAGTATTCAAA
TTGATTATCTTTTTCCACCTGGCTATAAGTCAACTTTCAAAAATCTTTCTTGTTGCACCTCATTGTCTCTCCAGAAAGAG
TTCAAGCCCAAAACCCTAATGCACACTTGCTTATGACAACCGGGAGGGAGTTGGCGCCCAATAAGTAGAGGGGTATCTCC
ATCTGCGATGAAG
>chr4A_112
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-------------------------------TATCCACATTAAGATTCGTGTAGGGGTGGGGACGGGGTTCAATGTGAGA
TTAGATGGCTAGTACCACCGACTTCAGAAAATTTTCGACAACT---ATGAAGAATGTGACCCACAAGTTGCTTGTTTGCA
TAGCGGGG---GTACATTGAGGGCCACAACTAAAACTCCCTACTAAGGGCTCATTCGGTTTTTGCGGGATGTCCAAATTA
GGGGAATATGAAAAGTAAATGATTTGGATGCCCTGTCCAATCCAATCCTTTCAAATTTCAGAAATGATAAATTTTGAACG
TTTGGGATTTGGTTATAGCAAACCGAATGTTTTCGATGGCAATTTTAGTGGGGGGTGGCAAGTTTAGTTAACACGCACGG
CAATTTTCTGGCAAAAAGCACAATGAGAACAGATTTGCCATGCATGTCAAATAAACTTGTCATCCTCGCATCATTAAAAT
TGTCATAAAAACGTTCAATTTGCCATGGTAAAAATTGAACGTTTGGGCGTTATCAGGGTCCTAGAATTTTCCATGGGTCT
CGCCTGGTGACAA-GAATTCTTAGGAATTACGCCAATATGAACACAATCACAAGACATAGAGTACCTTC----------A
TTCATTTGAAACGATTGTCATAGTAGATAGGGAAAAAAACCATGGTTCAAAATCACATTGGAATCCTTCAAAAAGAATCT
ATATATACACCGAATGAGCCCTAACATCGCCGCGATCGAGTTCGATCAATTGCATTGCATGGTGCGATCGACGCACGTCC
ATACCTTCCTTTTGGTGCCATGACGCGGTCACCTTAGAAACAAGACGCAAGAACGCATGCATGCGCATGCACCAATTGGC
AAGAAGATGGAGTACAACAAGACGCCCGGGACACTCGCGCTCAGTCCAGTAGTCGGCACCAGATCCGGCACTCCCGCTGC
TCGATCGCTGATCCCCCA-TGGTCATGGCCGCGCGCATGCACCGTCGGAAAAACCTCCCAGCCGCACCGACGACGAGCAC
CAAGAACCACTCCCTGGCCGCGCGAGCAACCCCACTGACACATAAATATCCGGGCGCTCGACCGCTCCAGCACACCACGA
CGCAAATC---------CCGACAGAAACCACCGAGGTTCTCGATCCAA--TTCCAAGCTGAAGCAAATGGCCGCGCCGAC
CGTGCTGGCGCTCGCCCTGGCCGTCCTCCTCCTCCCGGCGGCGGCGGCGGCGG------------CGGGGCGCGCCCCGC
CGGGCGCCAGCCCGCTCGTGACCACGTGCAACGAGGGCCCCTTCCCGGCGCACTGCGTCAAGGAGCTGGGCCCGCGCCTC
CTCGACATCCAGACCACGCTGGCGTCGGTCTCGCCGCGGGGCGCGCTCATCGCCGGCGCGCCGGGCACGGTGGACTTCTC
TTCGCTCGTGGCCGTGGCCATGGAGGCGGCCACGGAGGCTGGCGCGGTGGCGTCCACCATCTTCGAGGGCAAGCTCCCCG
GGTTCAACGCCTCCGTGCCGGACTTCAAGGTCTGCCTCAGCAACTGCAGCGTCACCATGAAGTCCGCCATGAAGAAGCTC
CACGGCGCCACCGCCGCCATGAAGGTCCACGCCCACGTGGTCGCCAAGGTGCTCGCCGACCGGGCCATCACCGACGTGTC
GGCCTGCACGATCAGCTGCAGGAACCTCACCGGCGACGTCAAGCTCATCCTCGAGACCAGCCTCGTGGAGTTCCAGAAGA
TGATCAGGATCGCCGTCAACTTCCTCACCAAGATCGCGGCCAAGACTCCGCCCGGCCCTCTCCCTCCCCTCCCTCCCCCG
GTGCGCCGCCGCTAGATCACCGGCATGCCACGAGCGATTCGGCTCAGTAACAATGGATAAAGGCTCAATAACGTGTGATT
CCTGTTGATCCTCAGTTTAGTTTTTCATAGTTTCTTTCATGTTTTGTTTAGTTTTTCATAGTTTA---GTTTCATGTTTT
GTTTCGTTCATTTGGTACGGATCCTCTTCATTTTGACTTTAGTCGTAAAATGTTGGGAATAAAATGGAATCTCAT--TAG
TTGGTTTAAATTTCGTATCTGCTCACTGGTACCAGTGCAAATGTACTAATATACGTTTGCTAATTCCCAG-------AAA
ATGTAGCACTTCAATGCATCTGAAATCCTGAACGTG--CTCATCCGTGCGAAATGCACAAATTGATACTCCCTCCGATCG
TCTAGATACATTCATTTGAATGATAAATA-------------------ATATGAATCAGAGAGAGTACATAAACTTTGTG
ACTCAATTTTTCATACTATTTTGACACAAATC------------------------------------------------
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>chr5B_660
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-------------------------------------AAAAAAGTCGCAATAACGCCTGCATGCGCATGCACCAATTGGC
AAGAAGATCGAGCACAACAGGACTCCCGGGACATTCGCGCTTACTCCACTAGTCGGCACCAGATCCGGCACTCCCGCAGC
TCGATCACTGATCACCCA-TGGTCATGGCCGCGCGCATGCCCCGTCGGAAAAACCTCCCAGCCGCACCGACGACGAGCAC
CAAGAACCACTCCCTGGCCGCGCGAGCAACCGCACGGACACATAAATATCCGGGCGTTCCATCGCTCCAGCACACCACAA
ACCAAGAGCTCAGCCCGCCGACAGGAACCACAGAGGTTCTCGATCCAGTTTTCCAAGCTGAAGGAAATGGCCGCGCCGAC
CCTGCTGGCGCTCGCCCTCGCCGTCCTCCTCCCCCCGGCGGCGGCGGCGGCGGTGGGGCCGCCGCCGGGGCGCGCCCCGC
CGGGCGCCAGCCCGCTCGTGACCACGTGCAACGAGGGCCCCTTCCCGGCGCACTGCGTCAAGGAGCTGGGCCCGCGCCTC
CTCGACATCCAGACCGCGCTGGCGTCGGTCTCGCCGCGGGGCGCGCTCATCGCCGGCGCGCCGGGGACGGTGGACTTCTC
CGCGCTCGTCGCCGTGGCCATGGAGGCGGCCACGGAGGCCGGCGCGGTGGCGACCACCATCTTCGAGGGCAAGGTCCCCG
GGTTCAACACCTCCGTGCCGGACTTCAAGGTCTGCCTCAGCAACTGCAGCGTCACCATGAAATCCGCCATGAAGAAGATC
CACGGCGCCACGGCCGCCTTGAAGGTCCACGCCCACCTGGTCGCCAAGGTGCTCGCCGACCGGGCCATCGCCGACGTGTC
GGCCTGCACGATCAGCTGCAGGAACCTCACCGGCGACGTCAGGCTCATCCTCGAGGCCAGCCTCGTGGAGTTCCAGAAGA
TGATCAGGATCGCCGTCAACTTCCTCACCAAGATCGCGGCCAAGACTCCGCCCGGCCCTCTCCCTCCCCTCGCTCCCCCG
TTGCGCCGCCCCTAGATCGCCGGCATGCCACGAGCAATTCGGCTCAGTAACAATGGATAAAGGCTCAATAACGTGGGATT
CCTGTTGATCCTCAGTTTAGTTTTTCATAGTTTCTTTCGTGTTTTGTTTAGTTTTTCATAGTTTATTAGTTTCATGTTTT
GTTTCCTTCTTTTGGTACGGATCCTCTTCATTTTGACTGTAGTCGTTAAATGTTGGAAATAAAATGGAATCCCAT--TAG
TTGGTTTAAATTTCGTATCGCTCCC----TACCAGTGCAAATGTAGTCATGTACGTTCGCCAATTCTCGGAACACTAAAA
ATGTAGCTTTTCAA--------AAATCTTGAATGTG--CTCATGCGTGCGAAATGTACAAATTGGTACTCCCTCCGATCC
ATATTACTACTCCCTCTAATTCATATGGATCCATATTACTAGTGGCTCATATGAATTAGAGGGGGTACATAAATTTCGTG
ACTCGCTTTTTCATACTATTTTGACACAAATCATGTTAAATTGACAGTACTAAGGCCCTGTTCGACAACCATCCACGGAG
CGCAGCACGGTTCTAACCGCTCCCTAATTATAACTGCATGTCACTCCGCTCCGAAGCGGAGTTACAGTGCGGAGGGATGC
CGAACTGGCCGGGTTTTTTTTTTAGGGGTAACTGGCCGTAACTAAGATGTTTCATGAGAGTCCAGCTCCGGCCCAAGGAG
TGAACCAACCTGTGGTTGGATGGTTAGAGAGACTGTGGTATCCTCAGCCCACCAGGGTTCAAATCCTGGTGCTCGCATTT
ATTTCCTGGATTTATTTCAGGATTTCCGGCGATGTGCATTCTGTGGGAGGAGACGTTTCGGTCGACGACGAGGCGTCTTC
GGTGACTTCGTAAATCTCAAGATGATATGTCAGCTTAGTCTTTCGGAGGCGCTCGTAGGGGTAAGGTGTGCGTGTGTGCG
TTCATAGGGGTGAGTGTATGCGCGTGTATATGAGCGCTTGTGTCTGTACTGATGTTCAAAGAAAAAAAGCTCCGGCCCTA
AGAAAGGAATAAAATGGACTG-----------------------------------------------------------
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---------------------------------TGACAACCGGGAGGGAGTTGGCGCCCAATAAGTAGAGGAGTATCTCC
ATCCGCGATGAAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------S----------------------------S--------
--S--S------S-----------S------S-----------SSS----------------S---S--S----------
----S-SSSSS-----------S--SS-S-S-S--S---S---------------S------------S-S-------S-
S-----S------------------S------------------------------------------------------
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-----------------------------------------------------------------------------SSS
SSS-SSSSSS-S-S--------------------S---------------S----S----S----SSSSSSSSSSSSSS-
-----S--------S---------------S-SS---------------------------------S------------
------------------------S----S-S---------------------------------S--------------
--S--S-------------S-------------S----------------------S-----------------------
--S-------------------------S----S----------------------------------------------
----S------------SS-------------------------------------------------------------
------------------S-------------------------------------------------------------
-S----------------------------------S-------------------------------------------
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-------------------------------S-----S------S-----------------------------------
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S-------------------------------------------------------------------------------
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----------------------------------------------------------------------S---------
---------S----------S---------------------------------------------S-------------
-----------S--------------------------------------------------------------------
--------S----------------------------S------------------------------------------
---S----------------------------------------S-----------------------------------
------------------------------S-------------------------------------S------SS---
--------------------------S---------------------SS-------S----------------SS----
---------------------------S--------SS-----S----------------------------------S-
--S--S----S-S-S--------------------------------------S------S-------------------
---S-S-----------------S----------------S--------SS-----------------------------
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---------------------------------------------------------------------S----------
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---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------S--------
---S---------
>forward_321
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-------------------------------------------------------------TTGCGGGGTCTCCAAATCA
A-------------------------------------------------------------------------------
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>reverse_2277
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------------------------------------TGCTCATTCGTGCGAAATGC------------------------
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