>input_sequence_72436
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----------------------------------------ATGAAGAT---GAAGAGATGCATCGTTCCTAGCATCCTGC
TGATGTTTTCACTGGA---G---GCAGCGCTCCTCGTCGCCG------------------GTCGCACCTCCGCCGCCGAC
GAAGTGGGCGCCATTCTCCTGCCGAGCCAAGGCCAAGGTACGTTAACGGCGATGCATGCCGCGCCTGAACTTCTTTCTTA
GTTCAGATTATTACTAGCTCCTA-----G-------TGCCTGAAGA-----AACTGATAAACA---------GCTAACTG
GGGCCTTGGGCTTGCAGAG---GAAGCAGCCATGGCGGCGGCCAAGAAGAGGCCGTGGAAGTGCTGTGACCAGGCGGTGT
GCACCAGGTCCATCCCGCCGATCTGCAGCTGCATGGACCAGGTCTTCGACTGCCCCTCCACCTGCAAGTCCTGCGGGCCG
TCCATGGCTGACCCGTCCCGCCACGTCTGCCAAGACCGGTACGTCGGCGACCCCGGGCCCATCTGCAGGCCGTGGGAGTG
CTGCGACTCGCCTACCTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CACCAGGTCCAACCCGCCGACGTGCCGCTGCGGGG
ACGAGGTCGACAAGTGTGCTCCGACCTGCAAGACCTGCCTGCCGTCCAGGTCCCGCCCTTCCCGCCGCGTCTGCATCGAC
AGCTACTTTGGG-CCCTTCCCGCCCGCATGCACGCCGTC---AGAGGCTGTTGCCGCCGGCGGTAGCTAG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr3B_1_TraesCS3B01G038700
TTTAGTGAATACTTTCCTGCACTTTATGATTGTATATTTGGACATCTCCAAAGACACTCATCCA-TGTATCTGCAGGAGC
GTAATATGCAATCATCCAAATTGCTGCGATCACCTTCTGACAAGGGGGGAAATCAAGGATACCGGCAACATTCCCCCGTT
GCTGGAAGAAAAGTTCATGAGCTTCCATGTCGTCGGCAATTCAACGGAACAACCTTTAGGCCATGTGGAAGCATTGCCGG
AGCACATATAAAGAGAAGGTATGACCCGGTAGAAAGTAATCGCTCATGAGCTTTTCGAGCCATTCAATTTTGTTACCGGT
GCACTATCGCACGACCAACCTGTGACCCGGCATGCTTCATCTTC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CCATTTGAAATAAATGTTTGAAAAGTACTTTTAATCA
TTT-TTTAAAAAAACGCCAGGAG----ATATTAATATCATATGCATATTGTTTAGTAAGAATTCTTCAAATTTTGAACAG
GCTGTATTTTTGTGTTCCAAACCTTA---------GTTTTTTTTAGCGGTACTACATCCTTCATCCTATAAAGCTCTTAT
ATTATGAGACCGAGACAGTACTTTGTATTGTAGCT-TGGCGCAGAATTGTTTCTTTA------GGATGCTGTGGTGCAGC
TACCAGCCTACTACACTAAACTGGCCTGTGT----------CTCGAACGAGAATGGCCGGCCTTTCGAACGATCGATTAG
CCAGCCCA-----CAAGTGAGGTACGGTGTGGGCCCGCAA-TTAGTGCATTGGATCCAGTCGTTTTCGTTGTCATGTGCA
ATTCATTTTAT----GGGTAGGTGTCCATGCTGCAATG-----AAGGAAGAACGTGGGTCACGTGATCGCACGTAC----
---------ACTTTTGTACATCTGTCTAGTCATCATCCA------TG---------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------CGTATGTGCACGTGTCCTTATCTGCTCGC
AGGCAGCGATGTCCACTCGTTACGTGATCCATCCATCGGTGTCACGAGGCTACATATACTGCTGCCTGCTGATG-----G
CTT-----CAAACGCACAAGCAAGCTCGGTAAGC-ACGCCATGAAGAT---GAAGAGATGCATCGTTCCTAGCATCCTGC
TGATGTTTTCACTGGA---G---GCAGCGCTCCTCGTCGCCG------------------GTCGCACCTCCGCCGCCGAC
GAAGTGGGCGCCATTCTCCTGCCGAGCCAAGGCCAAGGTACGTTAACGGCGATGCATGCCGCGCCTGAACTTCTTTCTTA
GTTCAGATTATTACTAGCTCCTA-----G-------TGCCTGAAGA-----AACTGATAAACA---------GCTAACTG
GGGCCTTGGGCTTGCAGAG---GAAGCAGCCATGGCGGCGGCCAAGAAGAGGCCGTGGAAGTGCTGTGACCAGGCGGTGT
GCACCAGGTCCATCCCGCCGATCTGCAGCTGCATGGACCAGGTCTTCGACTGCCCCTCCACCTGCAAGTCCTGCGGGCCG
TCCATGGCTGACCCGTCCCGCCACGTCTGCCAAGACCGGTACGTCGGCGACCCCGGGCCCATCTGCAGGCCGTGGGAGTG
CTGCGACTCGCCTACCTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CACCAGGTCCAACCCGCCGACGTGCCGCTGCGGGG
ACGAGGTCGACAAGTGTGCTCCGACCTGCAAGACCTGCCTGCCGTCCAGGTCCCGCCCTTCCCGCCGCGTCTGCATCGAC
AGCTACTTTGGG-CCCTTCCCGCCCGCATGCACGCCGTC---AGAGGCTGTTGCCGCCGGCGGTAGCTAGCATGCGCAGC
ACACGCGCGTTCATCACCCGATCAACGCCGCA---GAGTGTCCTCATA--CCCTG-------CTGCAGCAGCAGTGTCTA
AGAATAAAATAAAAATGGATGGTCTATATGTGTGGTGGACA--CAATTATGAATAAGACAACGTAGCAATGTTCAATCTT
TAT--------AAATGAACGGTGCAGTTTTCTTCGGTTTCACATAATGTTTTTTCCTAAAGCTGTCAATAGTGGTGGTAT
CTTAGGGAATTTTCGCTGCAAATCTCCCGCAACCATTCAGAATGCGAAAGCCGTTTAACGTGAATCTGTAACGGTACGCG
GCGCGGTTCGAACGTACTTTTTTCTCAAAACCGAGACAAACATGAAACATGGAGAGTTTAGCTGGGATCCGGACATCTGT
CTTTTTTTTTGCGGGGTAAAGGGAGATTCTATTACGGTAAAGGGAGATTCTATTACTTAAGGAGGCAAATCAGCCAAAAA
CAAGCTTTACAATGTCACTCAATCCTGAGCCCAACCATACTGTAGTACGAGGGGTGCTCCTCTCATATGCAACTAATACA
TGGCTGACTTTATTTTGTGAACGACTAATAGCAGTATCCCTGTGCAGATGGCGGAAGGCCGCTGCTGATGCAGGAAACGT
GATTAGCGTTTGGCGGAAAGCTGCTATGAGGCACTAGTGTGTTTGATGGAAGCTACTCGATCCTCAACCAGGTTCCGTCG
GCGCCGACGCACCCCTAACCTCAACCCGGTTCCGTCGGCGCCGGCGCACCCCTAACCTCTTCTTCTTCTTCTTCTTCTTC
CTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTTTTCCTCCTCTTCTTCTACTTTTTTTTCATCTTTCTTCTTTCTTCTTA
ACCAAACTAAATATAAATCTAAACCTAAAAAAAACATAAACTAAACCTAAACCAAAATAAATCTAAACTAAACTTAAACT
AAAGTAAACCTAAACTAAACTAAATCTAAACCTAAACGTTAAAAAAGGAAAA
>chr3A_1
TTTAGTGAATACTTTCCTGCACTTTATGATTGCATATTTGGCCA--TCCAAAGATACTCCTCCAATGCATCTGCAGGAGT
GTGATATGCAATCATCCAAATTGTTGCGATCACCTTTTGACAAGGGGGGAAATCAAGGATACCGGCAACATTCCCCCATT
TCTGGAAGAAAAGTTCATTGGCTTCCATGTCGTCAGCAATTCAACGGAACAACCTTTCGGACATCCAGAAGCATCGCCGC
AACACATACAATGAGAAGGTATGAACCGATAGAAAGTAACAACACATGAGCTTTTCGAGCCCTTCAATTTTGTTTCGGTG
CACTG-TCGCACGACCAGCCTGCGAACCTGCATGCTTCATCTTCTTTCCGATCGCCACTATCCATTAATTGAAGAACCAT
CAATGTACTTCGTCTTTTTCGTCATCCATGACTTCACTCTAGGATTTGGAGCTCCAATCCGACGATGGATCATCAAAAAA
GTTGTGTGATTTTTTAGGAACTATTTCCTTCTTACTTGGATATTATCGGATTAAGTGAATAAAATTTTCAACCAACTAAA
ATTGGAAGTGGCATTGGTCCACAAACTAGTCAAGGCAAATTAATTTGCCCAAACCATATCTGTATATGGCATAAAATTAT
TTCTTTTTTGCGAGGGATATGGCATTATATATTATCTATCATGCCATTTGAAATAAATGTTTGAAAAGTACTTTTAAACA
TTTTTTTTCAGAAACGCCAGAAGATATATATTAAAATCATATGTATATTGTTTAGTAAAATTTCTTCAAACTTTGACCAA
GCTGTATTTTTGTATTCCAAACTTTACATTGTATTGTTGTTTTTAGCGGTACTAT-------------------------
---------------------TTTGCATTGTTGCTGTGGCGCAGATTTTAAAATTTTTATGAGGGATGCTGTGGCGCAGC
A--------ACTACAGTAAACTGGCCTGCGTGTCACCGTCTCTCGAACGAGAATGGCCTGCCTTTCGAACGATCGATTAG
CCACAACGTGGGTCACGTGAGGTACGGTGTGGGCCCGCAA-TTGGTGCATTGGATCCAGTCATG----------------
-------------------------------TGCAATC-----AAGGGAGAACGTGGGTCACGTGACCGCATGTACGGCT
TCTGTCGACACTTTTGTCCATCTGTCTAGTCATCAGACA------CG---------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------CATATGTGCACGTGTCCTTATCTGCTCGC
ATGCAGCGATGTCCGCTCGTTAGGT----GATCCATCGGTGTCCCGAGGCTACATATACGGCTGGCTGCTATCTAGCCAG
CTTCAAAGCAAACGCACAAGCAAGCTCAGTAAGC-ACGCCATGGGAAT---GAAGCGATGCGTCGTTCCTAGCATCCTGC
TGATGCTTGCACTGCA---G---GCAGCCCTCCTCGTCGCCG------------------G------------------C
GACGTGGATGCCATTCTCCTGCCGAGCCAAGGCCAAGGTGCG-----------------CGTGCGTCAACTCCTTTCTTC
T----CTAGTTCATGGCTTCAG----GCG-------TCCATGAA------AAACTGA----------------TTAACTG
AGGGCTTGGGCTTGCAGAC---GAAGCAGCCAT---GGCGGCCAAGAAGAGGCCGTGGAAGTGCTGCGACCAGGCGGTGT
GCACCAGGTCCATCCCGCCGATCTGCCGCTGCATGGACCAGGTCTTCGAGTGCCCCTCCACCTGCAAGGCCTGCGGGCCG
TCCGTGGGCGACCCGTCCCGCCGCGTCTGCCAAGACCAGTACGTCGGCGACCCCGGGCCCATCTGCAGGCCCTGGGACTG
CTGCGACCTGCCCCTGTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CACCAGGTCCAACCCGCCGACGTGCCAATGCATGG
ACGAGGTCGACAAGTGTGCTCCGACCTGCAAGACCTGCCTGCCGTCCAGGTCGCGCCCTTCTCTCCGCGTCTGCATCGAC
CGCTACTTTGGA-CCCTTCCCGCCCGCGTGCACGCCGTC---AGAGGCTGTTGCCGCCGGCGGTAACTAGCACGCTCA--
-----CGCGTTGATCACCCGATCAACGCCGTC---GAGTGTCCTCTCCCGCCCTG-------CTGCAGCAGCAGTGTCTA
AGAATAAAATAGAAATGGATGGCCTATATGTGTGGTGGACACACAATTATGAATAAGACAACGTGGCAATGTTCAATCTT
TATCTTTATATAAACGAACGGTGCTGTTTTCTTCCGCTTCACATAGACTCTTTTCCTAA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr3A_657
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------CGAGAAAGGCCGGCCCTTCGAACGATCGATTAG
CCAGCCCA-----CAAGTGAGGTCCGGTGTGGGCCCAAAAGTTAGTGCATTGGATCCAGTCGATTTCGTTGTCACCTGCA
ATTCATTCATTATCAGGGTACGTACCCATGCTGCAATCAAGGTAAGGGAGAACGTGGTTCACGTGACTGCATGTACTGAT
GTACGGCTGTCTGTG----ATCTGTCTAGTCATCATCCACATCCACGAGGATGGGGCGTCGACCCGTTGGCTGGGCAGCT
GAGGTTGCTGCCAGCCCATCCGAGTTCGAATCCCGGAATGGGCGCCCCGTGCTTATGGAGTTTCTCCTATAAAGACAATG
AGGGTTAGCCCTTGGGTTGGTCTTATTTTTTTTTTATCATTCACATCCATACATATGTGCACGTGTCCTTATCTGCTCGC
AGGCAGCGATGTCCACGCGTTAGGT----GATCCATCGGTGTCACAAGGCTACATATACGGCTGGCTGCCA--TAGCCAG
CTT-----CACACGCACAAGCAAGCTCACTACAC-ACGCCATGGGGAT---GAAGCGATGCATCGTTCCTAGCATCCTGC
TGATGCTTGCATTGCA---G---GCAGCCCTGCTCGTCGCCG------------------G------------------C
GACGTGGGCGACATTCTCCTGCCGAGCCAAGGCCAAGGTGCG-----------------CCTGCGTCAACTCCTTTCTTC
T----CCGGTTCCTGGCTTCTTTCATGCG-------TCCATGAAGATCAGAAACTGA----------------TTAACTG
AGGGCTTGCAGTTGCAGAC---GAAGCAGCCAT---GGCGGCCAAGAAGAGGCCGTGGAAGTGCTGCGACCAGGCGGTGT
GCACCCGCTCCGAACCGCCGATCTGCCGCTGCATGGACCAGGTTTTCGAGTGCCCCTCCACCTGCAAGTCCTGCGGGCCG
TCCATGGCCGACCCGTCCCGCCTCGTCTGCCAAGACCAGTACGTCGGCCTCCCCGGGCCCATCTGCAGGCCGTGGGAGTG
CTGCGACTCGCCTACGTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CACCAAGTCCAACCCGCCGACGTGCCGCTGCGGGG
ACGAGGTCGACGAGTGTGCTCCGACCTGCAAGACCTGCCTGCCGGCCAGGTCGCACCCTTCCCGCCGCGTCTGCATCGAC
AGCTACTTTGGA-GCCTTCCCTCCTGCGTGCACGCCGTC---AGAGGCTGTTCCGCCGGT--GTAACTAGCACGC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr3D_704
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------AGGTACGGTGTGGACAAGCAA-TTAATTCATTTGATTCAGTCGATTTCGTCGCCATGTGCA
GCTCATTGTCAGCA--------TGCCCATGCGGTATCA-----ATGAGAGAACGTGCGACTCGTGCCTGCATGTACGGC-
----------CTTTTGTCAATCTGTCTAGTCATCATCCACATCCACG---------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------CATATGTGCACGTGTCCTTATCGGCTCGC
ATGCAGCGATGTCCACGCGTCAGGT----GATCCATCGGTGTCACGAGGCTACATATACGGCTGGCTGCCA--TAGCCAG
CTT-----CACACGCACAAGCAAGCTCACTACAC-ACGCCATGGGGAT---GAAGCGATGCATCGTTCCTACCATCCTGC
TGATGCTTGCACTGCA---GTCTGCAGCCCTCCTCGTCGCCG------------------G------------------C
GACGTGGGCGCCATTCTCCTGCCGAGCCAAGGCCAAGGTACG-----------------CGTGCGTCAACTCCTTTCTTC
T----CCGGTTCCCGGCTTCTTTCATGCG-------TCCATGAAGATCAGAAACTGA----------------TTAACTG
AGGGCTTGCAGTTGCAGAC---GAAGCAGCCAT---GGCGGCCAAGAAGAGGCCGTGGAAGTGCTGCGACCAGGCGGTGT
GCACCCGCTCCATCCCGCCGATCTGCCGCTGCATGGACCAGGTTTTCGAGTGCCCCTCCACCTGCAAGGCCTGCGGGCCG
TCCGTGGGCGACCCGTCCCGCCGCGTCTGCCAAGACCAGTACGTCGGCGACCCCGGGCCCATCTGCCGGCCGTGGGAGTG
CTGCGACTCGCCTACCTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CACTAAGTCCAACCCGCCGACGTGCCGCTGCGGGG
ACGAGGTCGACAAGTGTGCTCCGACCTGCAAGACCTGCCTGCCGTCCAGGCCGCGCCCCTCCCGCCGCGTCTGCCTCGAC
AGCTACTTCGGG-CCCTTCCCGCCCGCATGCACGCC------CAAGGCTGTCGCCGCCGGCGGTAACTAGCACGCC----
-------CGTTGATCACGCGATCAACGCCGTC---GAGTGTCCTCACCTACCCTGCTGCAGACTGCAGTAGCAGTGTGTA
AGAATAAAATAAAAATGGATGACCTATATGTGTGGTGGACACACGATTATGAATAAGACAACGTGGTGATGTTCAATCCT
--------TATAAATGAATGGTGCAGTTTTCTTCGGTTTTACA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr3A_890
GCATGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---TAGCGATTTCCACGCGTTAGGT----GATCCATCGGTGTCACGAGGCTACATATACTACGACTGG-----TTGCTAA
TTC-----CAAACGCACAAGCAAGCTCAGTAAGCAACGCCATGGGGAT---GAAGCGATGCATCCTTCCCAGCATCCTGC
TGATGCTTTCACTGGA---G---GCAGCCCTCCTCGTCGCCGGCCGCCCCTCTGTCGACGG------------------C
GAGGTGGGTGCCATTCTCCTGCCGAGCCAAGGCCAAGGTACGGTTGCG-----------CGCGCGTCAACTCCTTTCT--
-----CTAGTTCGTGGCTTCA-TCGTGCATCCATGATCCATGAAGA-----AACTGATCTCAGCTTCACCACGTTAACTG
AGGGCTCGCAGTTGCAGACCAGCAAGCAGCCATGGCGGCGCC---GAAGAGGCCGTGGAAGTGCTGCGACCGCGCGCGGT
GCACCAGGTCCATCCCGCCGATCTGCACCTGCGTGGACGAGGCGTTCGAGTGCGCCTCCACCTGCAAGGCATGCGTGCCG
TCGACGCGGAACCCGTCCCTCCAGGTCTGCGAGGATCAGTACGTCGGCGACCCCGGGCCCATCTGCCGGCCGTGGGAGTG
CTGCGACTCGGCCGCGTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CACCAAGACAGACCCGCCGACGTGCCGCTGCGGGG
ACGAGGTCGAGCGGTGCGCTCCGACCTGCAAGACCTGCGAGCCGTCCACGTCGGACCCATCCCTCAACGTCTGCAGGGAC
GCGTACA-CCGGGGCCATCCCGCCCACATGCA---CGCC---AGAGGCGGTTGCCGCCGGCGGTAACTAGCACGCGC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------
>chr3B_893
--------------------------------------------------------------------------------
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-GGTAGCGATTTCCACGCGTTGGGT----CATCCATCGGTGTCACGAGGCTACATATACTACGTCTGG-----CTGCTAG
CTA-----CAAACGCACAAGCAAGCTCAATAAAGCACGCCATGGGGACGAAGAAGAGATGCATCGTTCCTAGCATCCTGC
TGATGCTAGCACTGCAGTCG---GCAGCCCTCCTCGTCGCCG------------------G------------------C
GACGTGGGCGCCATTCTCCTGCCGAGCAAAGGCCAAGGTACG-----------------CGTGCGTCAACTCCTTTCTTG
TCTAGCTAGTTCATGGCTTCA-TCATGCG-------TCCATGAAGA-----AACTGA----------------TTAACTG
AGGGCTTGCAGTTGCAGAC---GAAGCAGCCATGGCGGCGGCCAAGAAGAGGCCGTGGAAGTGCTGCGACAAGGCCTTCT
GCACCAGATCCATCCCGCCGATCTGCCGCTGCATGGACGAGCTCTTCGAGTGCCCCTCCACCTGCAAGTCCTGCGGGCCG
TCCATGGCTGACCCGTCCCGCCTCGTCTGCCAGGACCAGTACGTCGGCGACCCGGGGCCCATCTGCAGGCCGTGGGAGTG
CTGCGACCTGCCCCGGGG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CACCAGGTCAAACCCGCCGACGTGTCAATGCCTCG
ACGAGGTCGACAAATGTTCCCCAACCTGCAAGACATGCCTGCCGTCCAGGTCGCGCCCTTCCCGCCGCGTCTGCATCGAC
AGCTACTTTGGA-CCCTTCCCGCCCGCGTGCA---CGCC---CAAGGCTGTCGCCGCCGGCGGGAACTAGCACGCCCA--
---------TTGATCACGCGATCAACGCCGTCGTCGAGTGTCCTCTCCTGCCCTGCTGCAGACTGCAGTAGCTTCGTGTA
AGAATAAAATAAAAATG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr3B_896
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----AGCGATTTCCACGCGTTAGGT----CATCCATCGGTGTCACGAGGCTACATATACTGCTGGCCGCTAGCTTGCCAG
TTT-----CAAGCGCACAAGCAAGCTCAGTAAGC-ACGCCATGGGGAT---GAAGCGATGCATCGTTCCTAGCATCTTGC
TGATGCTTTCACTGGA---G---GCGGCCCTCCTCATCGCCGACCGCCCCTCTGTAGACGA------------------C
GAGGTGGGTACCATTCTCCTGCCGAGCCAAGGCCAAGGTACGGTTGGG-----------CGCGCGTGAACTCCTTTCT--
-----CTAGTTCATGGCTTCA-TCATGCATCCATGATCCATGAAGA-----AACTGATCGCAGCTTCACCACGTTAACTG
AGGGCTCGCAGTTGCAGACCAGCAAGCAGCCATGGCGGCGCC------GAGGCCGTGGAAGTGCTGTGACCGGCCGCGGT
GTACCAGGTCCATCCCGCCGATCTGCACCTGCGTGGACGAGGCGTTCGAGTGCGCCTCCACCTGCAAGGCATGCGTGCCG
TCGACGCGGAACCCGTCCCTCCAGGTCTGCCAAGACCAGTACGTCGGCGACCCCGGGCCTATATGCCGGCCGTGGGAGTG
CTGCGACTCGGCGGCGTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CACCAAGACAGACCCGCCGACGTGCCGCTGCGGGG
ACGAGGTCGAGCAGTGCGCTCCCACCTGCAAGAGCTGCGAAGCGTCCACGTCGAACCCGTCCCTCAACGTCTGCAAGGAC
GCGTTCA-CCGGGGCCATCCCGCCCACATGCA---CGCCGCCAGAGGCTCTTGCCGCCGGCGGTAACTAGCACGCGCA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr3D_896
--------------------------------------------------------------------------------
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----AGCGATTTCCACGCGTTAGGT----GATCCATCGGTGTCACGAGGCTACATACACGGCTGGTCGCTAGCTAGCCAG
CTT-----CAAACACACAAGCAAGCTCAGTAAGC-ACGCCATGAAGAT---GAAGCGATGCATCGTTCCTAGCATCCTGC
TGATGCTTTCACTGGA---G---GCGGCCCTCCTCGTCGCCGGCCGCCCCTCTGTCGACGG------------------C
GAGGTGGGTGCCATTCTCCTGCCGAGCCAAGGCCAAGGTACGGTTGTG-----------CGCGCGTGAACTCATTTCT--
-----CTACTTCATGGCTTCA-TCATGCG-------TCCATGAAGA-----AACTGACCTCAGCTT--------------
------------TGCTGAA---CAAGCAGTCATGGCGGCGCC---CAAGAGGCCGTGGAAGTGCTGCGACCGGGCGCGGT
GCACCAGGTCGATCCCGCCGATCTGCACCTGCATGGACGAGGCTTTCGAGTGCGCCTCCACCTGCAAGGCATGCGTGCCG
TCGACGCGCAACCCGTCCCTCCAGGTCTGCCAGGACCAGTTCGTCGGCGACCCGGGGCCCATCTGCCGGCCGTGGGAGTG
CTGCGACTCGGCCGCGTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CACCAAGACCGACCCGCCGACGTGCCGCTGCGGGG
ACGAGGTCGAGCAGTGCGCTCCGACCTGCAAGACGTGCGAGCCGTCCACGTCGGACCCATCCCTCAACGTCTGCAAGGAC
GCGTACA-CCGGGGCCATCCCGCCCACGTGCA---CGCCGCCAGAGGCTCTTGCCGCCGGCGGTAACTAGCACGCA----
-------CGCGCACGCG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr3B_1241
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GCAGAC---GAAGCAGCCATGGCGGCGGCCAAGAAGAGGCCGTGGAAGTGTTGCGACAAGGCCTTCT
GCACCATGTCTATCCCACCGATCTGCCGCTGCATGGACGAGCTCTTCGAGTGCCCCTCCACCTGCAAGTCCTGCGGGCCG
TCCATGGCTGACGCACCTCGCATTGTCTGCCAGCACCAGTACGTAGGCGACCCCGGGT-CATATGCCGGCGGTGGGATTG
CTGCGACTCGCCTACTTGTTGTTGGAAATATGAGCAAATCACTACGAGATTTAATCTGAATAAACAGAAGATAAATCATG
ACAGTAATAGCAAAGATTAAACTAATCATGCAAACTAGCATAATAGATGAACAATCACATCTAAGGCACATACTAGAAAC
ATGAATTCAATCACGATCTCGAACAAGAAGGATAGAATCACATACGGTGTAGTGGGAACAACACCGCCAGCATTGTTGTT
GTCGCTCATGTAGTTGAGGATGACGTTGTCGAGGTCGGGGAAGAAGTCGACGTTGGCAAAGTCGTCGCCGTCAGCAGTCG
CGCGAGTGCGCTCCCCAAAAATCTGATCGCCCCTCTCCCGTACAGGATCACGAGTGGCGGGGTTCCGGAAGCCTGCTGTC
CCTTCTCGCGGTGCACCCCACGTCCGAGTCCGAGGCCGGGTAGATCGTGGGAGTAAACCCCACGTCCGAGTCGCGATCCA
AAAGAATCAGAAACTGTTCAGTAATTAACACGTCCATTAATTTATTAATTAATGACTCATTTTTTTTCGAGCAGCAAAAA
TATAGACAACGTGCATAGCTCTGCCCTCGGCTCGGCTCAATCCCACAACCCGCCGACGAGGCGAGCGAGGAGGAGGAGCA
CGTGTAGGTCTCCTCTTCTCATGCTCATATAAGTGGTAGACGAGCTCGCCTTATAAAGAGGTGCAACTCTCACTCAAGTT
TCATGGTGGGACTAAACTTTAGTCTCACTCACTCCACTCACATGTGTGCATGAATGGGCCAAGAAAATTTCAGAATTTTA
GTTGGGCTTCGGGCCAAAGGCCTACTAACAAAATTCCAACACTTACACCATGTCCAATCCGCCGACGTGCCGCTTCGGGG
ACGAGGTCGACAAGTGTGCTCCGACCTGCAAGAACTGCCTGCCGTCCAGGTCCCGCCTTTCTCGGCGTGTCTGCATCGAC
AGCTACTTCCGGACCCTTCCCGCCCGCATGCACGCCGCCGCCAGAGGCCGTAGCCGCCGGCGGTAACTA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>SNPs
--------------------------------S--------S--SS--------S----S-------S-----------S
--S--------------------S------------S----------------------------------------S--
S-----------------SS--------------S----------------------S--S---SSS-------S----S
-S------S--S------------S---S----------SSS-S-----------------S------------S-S-SS
SSSSSS-----------S----S--S--S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
-------SS-S---------S-------------S--------S--------------S-S---------S-----S--S
-------------S--------S---------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS----S-----S-------------S--SSSSS---S-----------------S-----
SSSSSSSSS------S------------S---------------------------------------------------
--------------------------------------------------------------------------------
-------S-S----------S---S------------S---------S------------------S----S--------
-----------------S---------------------------S----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
----------------------S--SSSS-----------------------------------------SSSS------
---------------------------S----------------------------------------------------
-----S----------------------S--------------------------------SSSSSSSSSSSSSSSSSS-
--S---------------------------------------S-SS--SSSSSSSSSSS-----S------S-------S
SS-SSSSSSS-S--SSSS--S-S--------------S-S------------------SSSSS----------S------
S--S--------------S-------------------------------------------------------------
-------------------------------------------------S------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S------S-----SS
SSSSS-------------------------SS--------------SS--------------------------------
----------------------S-----------------------------------------S---------------
---------------------------------------------SSS-S---------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_343
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CTATCGCACGACCAACCTGT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>reverse_3503
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TGGGATCCGGACATCTGT
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
