>input_sequence_72410
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------------------------------------------------ATGGCGGCGGCGGTGCAGAACGAGGTGGTGGC
GCGGCAGGGGCGCGAGGACG---------GCGTCGACGAGGAGCGGCCACTCCTGGCGAGGCCGCCGGCCGTCCGCGACG
ACCCAGCTGGCGACGGGCTGAGCCCGATGCAGAGGGCAATCAGCCAGACGTACCAGAGCACGGCGCACCTGGCGACGCTG
CTGCCCACGGGCACCGTCATGGCGTTCCAGCTGCTGTCCCCGATCGTCACGGACCAGGGCCACTGCGTCCGCGCCAACCG
CGCCATGGCGGCCGCGCTCGTCGCGCTCTGCGCGCTCTCCTGCTTCGCGCTCAGCTTCACCGACAGCTTCCGGGACGCCA
AGGGCGCCGTGCGCTACGGCTTTGCCACGCGCCGCGGGCTCTGGGTCATCGACGGCGGCGCGCCGCTCGACCCGCAGGCC
GCGGCAGCCTACAGGCTGCGCTTCCTCGACCTCGTGCACGCCGTCGTCACCGTCATGGTCTTCGTGGCCGTCGCGCTCTT
GGACCGCAACGTCGTGTCCTGCTTCTACCCCGTGCCGTCCGAGGACGCCGCGCAGGTGCTCACCGTGCTGCCCATCGCCA
TTGGGGTGGTCGGGAGCATGCTCTTCGTCACCTTCCCCACCACACGCCACGGCATCGGCTTCCCGCTCTCGCAGCATTGA
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>chr1B_1_TraesCS1B01G424300
TCGTATGTTGAATTAATATTACAATTTCATTTGGTTCATATCATTGAAATGTGTAATTTGTTTGCTGCTATGCAAAATTT
ACGGTCCCGTGAGCGTTCCGGCTAAATCTGTTCCGCCGAAGCGCTCATGACACCGTGATTTTTT--TTACGGACGCCCTT
ATACTCGTTTCGCTTGCCGTCCAGT---------TCTAGGATCTGCTAGTGATGCTCTCACACCCGAAATCGTATAAACA
TCGTTGCCAAAAGAAAAACAAACCTTATAAACAATTCCCTTCCGAGACTCGTGTCCTTGTGGCGCGGTAGTGGGCCGCAC
ACATTCAGCTGGCACGACACGGACGCACGTCTACCCCGCTCAAAGTCTTTGCCTAAATCCGATAGTAATACGCATCGTGC
CAAAGCCTTTCACTCACACAAAAACGCACTGGACGACGCGATGCACGGTACGGATAATGATTCTCCA--TCTACCTAAC-
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-------------------------------------------TAACGTATTTGC--------------TTAATAGCCAT
CGT--------------GCACAGTAATGGTTATCTACTACTATTAGTCTATAACTACGCGTGTTGGCGTAATCGCGTTGC
ACCTTGCGTTACTCAACTGCGCGCGCGGCTGTGCTAGTGTTACGTGGCCACTGGCCGGGAGTGCAGCCGGAAGCAACCCA
AGGCAA---AGGCTTTGACTTGAAGCGGCAAAGGGTCGGGTCGCGTCCCGCGTTTCGGTCCACCTCTCTTGCAAGCAACG
GCGAAAAACCTCCACCGATTTGTGTCGGTTTCAATCAAGGTTCCTGTTTCTTGCAAGCCAAGCGCAAGCGCCCGCCGGCC
TGCCGGCCAGCCGCAAACGCCCCGGCAAGCTCCACCCGTGTCGTCACGCCGCGCGCGGCATTCCCTGAAACCCCCTTTAA
ATCCCTTCTCCGTTGCACCGGCTGTCACACATCATTCGCATTCCCTTGCCCCTCCTTCCGGTTTATTCATCATCATAGGC
AAGATTCTTTCGTCAAGAGGGTAGATTGAAGCGAGTCCGACAGCGGCAATGGCGGCGGCGGTGCAGAACGAGGTGGTGGC
GCGGCAGGGGCGCGAGGACG---------GCGTCGACGAGGAGCGGCCACTCCTGGCGAGGCCGCCGGCCGTCCGCGACG
ACCCAGCTGGCGACGGGCTGAGCCCGATGCAGAGGGCAATCAGCCAGACGTACCAGAGCACGGCGCACCTGGCGACGCTG
CTGCCCACGGGCACCGTCATGGCGTTCCAGCTGCTGTCCCCGATCGTCACGGACCAGGGCCACTGCGTCCGCGCCAACCG
CGCCATGGCGGCCGCGCTCGTCGCGCTCTGCGCGCTCTCCTGCTTCGCGCTCAGCTTCACCGACAGCTTCCGGGACGCCA
AGGGCGCCGTGCGCTACGGCTTTGCCACGCGCCGCGGGCTCTGGGTCATCGACGGCGGCGCGCCGCTCGACCCGCAGGCC
GCGGCAGCCTACAGGCTGCGCTTCCTCGACCTCGTGCACGCCGTCGTCACCGTCATGGTCTTCGTGGCCGTCGCGCTCTT
GGACCGCAACGTCGTGTCCTGCTTCTACCCCGTGCCGTCCGAGGACGCCGCGCAGGTGCTCACCGTGCTGCCCATCGCCA
TTGGGGTGGTCGGGAGCATGCTCTTCGTCACCTTCCCCACCACACGCCACGGCATCGGCTTCCCGCTCTCGCAGCATTGA
TTGATTCCCGAGTGCTGCCCTTCCTACTATTCGATCCACGATTATTTCTTCTTCTCTCTTCTCTTGTGGAGTATAAAGAA
AAGAAAATGCTACTCTCTCGGCCGTGCGCCAACCGCGACGAGGGAGTACAAAGTGACAGGCGGTAAAGAGTAAATATACC
---ATGCTTTTTAAACAAAATGTCCCTCATATTT-GCCTCAGCTTCTGTCTGAAAGACCCTCATCCCAAACGCAGCGACT
ATTTATCGCATTATTTGAAAAGATGTCTCGCTGAAGCGGTTGGAGA-AATCGGGCTGGCCCATGTTCGCGCAGAAAAAGA
AAAATAATATATGGGAGAAGCGGGATTCGACCCTGCTCGCC--------------------------ACTCTGACCAAGT
CTCGCTTGTGATAAGTATGAGACGCCTTTTTTTTAGAAGAACAGGGAGGCCATTTGTTTTCCACTCCGAACAAAAAAGTC
GGTTTTCCATTTGTTTTCATGTTTTTATTTCTATTTTTTCTTTTCGTCTTTTCTTTTCTTTTTTCCTTTTCTCTTCTCCA
C----TTTTTGTTTAGTTTTCCTTTTCCTTTTCCATTTTTTCACTTTCTTTTGTTTTTTTCTTCTCCGGGCGTATGCTTC
ATTTTCGGTTTTTCCTTAAAATGCTTGTTTAACATTTTTTAAATACTTGTTCAACATTTTCTCAAATACTTGTCAACATT
TTGTCAAAATACTTGTTCAAAATTTTCTTA-----------------------ATACTTGTTCAACATTTTTATATACAT
GATCAACATTTTTTTCAAATACATGTACAACATCTTTTTAAATATGTGTTCAACATTTTTCAAATGCTTGTTCAGCATTT
TTATATACATGATCAACATTTTTTCAAAGACTTGTCAACATTATTTTTTCAAATACCTGTTCAACATTTTCCAAATGCTT
GGTCAACGTTCATAAATACTAGTTAAACATTTTTCAAAACTTTTTAAACATTTTTATATAAATGATCAACATTTGTTCAA
ATACTTGTACACCATTTT
>chr1D_1
TCGTATGTTGAATTTATATTATGATTGTATTCGGTTCATATCATTGAAATGTGTAATTTGTTTGCTGCTATGCAAAATTT
ACGGTCCCGCGAGTGTTCTGACAAAATCTT----------------GCGGCACCGTAATTTTTT--TTACGGACGGCCTT
ATACTCGTTTTGCTTGCCGGCCAGTTGCGGGATCT---------GCTAGAGATGCTCTT--ACCCGAAATCGTATAAACA
TCCTTGCCAAAAAAAATATCA----TATAAACAATTCCCTTACGAGACTCGTGTCCTTGTGGCGTGGTAGTGGGCCGCAC
ACATGCAGCTGGCACGACACGGACGCACGTCTACCC-GCTCAAAGTCTTTGCCTAAATCCAATAGTAATACGCATCGTGC
CAAAGCCTTCCACGCACACAAAAACGCACTGGACGCC---ATGCACGGTACGGATAAATGATTCTCTATTCTACCTAAC-
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-------------------------------------------TAACGTATTTGCATCGCCTCCTTTGCTTAATAGCCAT
CGTGCCAAAGCATACACGCACAGTAACGGCTATCTACTATAGGAG---TATAACTAAGCGTGTTGGCGTAATCGCGTTGC
CCCTTGCGTTACTCAACTGCGCGCGCGGCTGGGCTAGTGTTACGTGGCCACTGGCTGGGAGTGCAGCCGGAAGCAACCCA
AGGC-A---AGGCTTTGACTTGAAGCGGCAAAGGGTCGGGTCGCGTCCCGCGTTTCGGTCCACCTCTCTTGCAAGCAACG
GCGAAAA-CCTCCACCGATCTGTGTCGGTTTCAATCAAGGTTCCTGTTTCTTGCAAGCCAAGCGCAAGCGCCC-------
-GCCGGCCAGCCGCAAACGCCCCGGCAAGCTCCACCCATGTCGTCACGCCGCGCGCGGCATTCCATGTAATCCCCTTTAA
ATCCCTTCTCCGTTGCACCGGCTATCACACATCATTCGCGTTCCCCTGCCTCTCCTTCCGGTTTAT---TCATCATAGGC
AAGATTCTTTCTTCCAGAGCGTAGATTGTAGCGAGTCCGGCAGCGGCAAT------GGCGGCGCAGAACGAGGTGGTGGC
GCGGCAGGGGCGCGAGGACGAGGTCCACGGCGTCGACGAGGAGCGGCCACTCCTGGCGAGGCCGCCGGCCGTCCGCGACG
ACCCA---GGCGACGGGCTGAGCCCGATGCAGAGGGCCATCAGCCAGACGTACCAGAGCACGGCGCACCTGGCCACGCTG
CTGCCCACGGGCACCGTCATGGCGTTCCAGCTGCTCTCCCCGATCGTCACGGACCAGGGCCACTGCGTGCGCGCCAACCG
CGCCATGGCCGGCGCGCTCGTCGCGCTCTGCGGCCTCTCCTGCTTCGCGCTCAGCTTCACCGACAGCTTCCGGGACGCCA
AGGGCGCCGTGCGCTACGGCTTCGCCACGCGCCGCGGGCTCTGGGTCATCGATGGCGGCGCGCCGCTCGACCCGCAGGCC
GCAGCAGCCTACAGGCTGCGCTTCCTCGACCTCGTGCACGCCGTCGTCACCGTCATGGTCTTCGTCGCCGTCGCGCTCTT
CGACCACAACGTCGTCTCCTGCTTCTACCCCGTGCCGTCCGAGGATGCCGCGCAGGTGCTCACCGTGCTGCCCATCGCCA
TCGGGGTGGTCGGGAGCATGCTCTTCGTCACCTTCCCGACCACACGCCACGGCATCGGCTTCCCGCTCTCGCAGCATT--
--GATTCCCGACTGCTGCCCTTCCTACTATTCAC----CGATTAATTCTTCTTCTCTCTTGTATAA--------------
---AAAATGGTAATCTCTCGGCCGTGCGCCAAGGGCGA-GAGGGAGTAC-AAGTGCCAGGCGGTAAAGAGTAAATATAGT
ACGATGCTTTTTAAAGAAAATGTCCCTCATATTTTGCCGCAGGTTCGGTCTGAAAGACCCCCATCCCAAA----------
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>chr1A_1
TCGTATGTTGAATTAATATTATGATTGTATTCGGTTCATATCATTGAAATGTGTAATTTGTTTGCTGCTATGCAAAATTT
ACGGTCCCGCGAGCGTTCCG---------------CCGAAGCGCTCGCGGCAGCGTAATTTTTTTTTTACGGACGCCCTT
ATACTCGTTTCGCTTGGCGTCCGGT---------T---------GCTAGAGATGCTTTT--ACCCGAGATCGTATAGACA
------------------------------------------------TCGTGTCCTTGTGGCGCGGTAGTGGGCCGCAC
ACATGCAGCTGGCACGACACGGACGCACGTCTACCC-GCTCAAAGTCTTTGCCTAAATCCAATAGTAATACGCATCGTGC
CAAAGCCTTTCACGCACACAAAAACGCACTGGACGCC---ATGCACGGTACGGATAATGATTCTCCA--TCTACCTAGTA
CTCCCTTCGTTCTGAATTACTTGTCTTGGATTTGTCTAGATACAGAGGTATCTAGCACTAAAATGAGTCTAGATACATCC
GTATCTAGACAAATCCAAGACAAGTAATTCGGAACGGGGGGAGTACCGTATTTGC--------------TTAATAGCCAA
CGT--------------GCACAGTAATGGCTATCTACTATAGGTG---TATAACTAAGCGTGTTGGCGTAATCGCGTTGC
CCCTTGCGTTACTCAACTGCGCGCGCGGCTGTGCTAGTGTTACGTGGCCACTGGCTGGGAGTGCAGCCGGAAGCAACCCA
AGGC-AATTAGGCTTTGACTTGAAGCGGCAAAGGGTCGGGTCGCGTCCCGCGTTTCGGTCCACCTCTCTTGCAAGCAACG
GCCAAAA-CCTCCACCGATTTGTGTCGGTTTCAATCAAGGTTCCTGTTTCTTGCAAGCCAAGCGCAAGCGCCC-------
-GCCGGCCAGCCGCAAACGCCCCGGCAAGCTCCACCCATGTCGTCACGCCGCGCGCGGCATTCCCTGAAACCCCCTTTAA
ATCCCTTCCCCGTTGCACCGGCTGTCACAGATCATTCGCGTTCCCCTGCCTCTCCTTCCGGTTTAT---TCATCATAGGC
AAGATTCTTTCTTCCAGAGCGTAGATTGTAGCGAGTCCGGCAGCGGCAAT---GGCGGCGGCGCAGAACGAGGTGGTGGC
GCGGCAGGGGCGCGAGGACGAGGTCCACGGCGTCGACGAGGAGCGGCCACTCCTGGCGAGGCCGCCGGCCGTCCGTGACG
ACCCA---GGCGACGGGCTGAGCCCGATGCAGAGGGCCATCAGCCAGACGTACCAGAGCACGGCGCACCTGGCCACGCTG
CTGCCCACGGGCACCGTCATGGCGTTCCAGCTGCTGTCCCCGATCGTCACGGACCAGGGCCACTGCGTGCGCGCCAACCG
CGCCATGGCCGGCGCGCTCGTCGCGCTCTGCGGCCTCTCCTGCTTCGCGCTCAGCTTCACCGACAGCTTCCGGGACGCCA
AGGGCGCCGTGCGCTACGGCTTCGCCACGCGCCGCGGGCTCTGGGTCATCGACGGCGGCGCGCCGCTCGACCCGCAGGCC
GCAGCAGCCTACAGGCTGCGCTTCCTCGACCTCGTACACGCCGTCGTCACCGTCATGGTCTTCGTGGCCGTCGCGCTCTT
CGACCACAACGTCGTGTCCTGCTTCTACCCCGTGCCGTCCGAGGATGCCGTGCAGGTGCTCACCGTGCTGCCCATCGCCA
TCGGGGTGGTCGGGAGCATGCTCTTCGTCACCTTCCCGACCACACGCCACGGCATCGGCTTCCCGCTCTCGCAGCATT--
--GATTCCCGAATGCTGCCCTTCCTACTATTCGA----CGATTAATTCTTCTTCTCTCTTGTATAA--------------
---AACATGGCAACCTCTCGGCCGTGCGCCAAGGGCGA-GAGGGAGTAC-AAGTGCCAGGCGGTAAAGAGTAAATA---T
ACGATGCTTTTTTTAAAAAATGTCCCTCATATTTTGCCTCAGGTTCGGTCTGAAAGACCCCCATCCCAAA----------
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>chr3B_1921
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---------------------GATGTCTCGCTGAAGCGTTTTCGTGTAATCAGGCGGGCCCATGTTCGCGCAGAAAAAGA
AAAATAGCATACGGGAGGAGCAGGATTCGATCCCGGCCCTTCTTAGGGTGAGCTAGCTCTACTAGCAACTGCGCCGAGGT
CCGGCTCATGATAAGAATGAGATGTGTCCTGTAGTTGAGGCAAGTGAAAC-----------------------------C
GGGTTTCCATTTGTTTTCATAGTATTTTTAT--TTTTTTCTTTCCGTTTATTCTTTGGTGTTTTCGTTTTCTTTTTTCTT
CTCCATTTTTGTTTAGTTTTCCTTTTCCATAT---TTTTTTTGCTTTCTTTTTT-------TTCTCCTGGTTTTTGTTTC
ATTTTCGGTTTTCCTTCAAATG-----------------------CTTGTTCAACATTTTCTCAAATACTTATTAACATT
TTTTC-AAATACTTGTCCAACATTTTCTTAAATACTTGTTCAACCTTTTACAAATACCTGTTCAACATTTTTATATACAT
GATCAACATTTTTC-CAAATACTTGTACAACATTTTGTCAAATACTTG-TCAACATTTTTCAAATACTTGTTCAGCATTT
TTATATACATGATCAACATTTTTCCAAATACTTGTCAACATTTTT-----------------------------------
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>SNPs
---------------------SS---SS---S------------------------------------------------
---------S----------S-S------SSSSSS-----------SS-S------S-----------------------
-----------------------------------SSSSSSSSS-----S--------SSS-------------------
--S---------S---S-SS-SSSS----------------S--------------------------------------
----S-------------------------------S-----------------------S-------------------
-------------S---------------------S-SSS----------------------------------------
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-----------------------------S---------SSSS-SSSS--------S-----------------------
S------------------------------------------------------S------------------------
----S---------------------------------------------------------------------------
-------S-----------------------------------------------------------------SSSSSSS
S------------------------------------S------------------------------------------
---------------------------------------S-----S----S---------------SSS-----------
-----------S--S----S--------S----------S----------SSS--------S------------------
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-----SSS-----------------------------S-----------------------------------S------
--------------------------------------------------------------------S-----------
---------S-S--------------------SS----------------------------------------------
----------------------S---------------------------------------------------------
--S-----------------------------------------------------------------------------
S----S---------------------------------------S----------------------------------
-S-----------------------------------S----------------------------------------SS
SS---------S----------------------SSSS------S---------------S-S-SSSSSSSSSSSSSSSS
SSS------S--S-------------------SS----S----------S-----S----------------------SS
---------------S--------------------------S---S-------------S---------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-----------------S--SSSSS-----S---S------------------------
------SS---S-----S---S--------S--S-SS-SSS-----------------------------SS-S-S-S--
-SS---SS-------S------S-SS-SS-S-SSSSS--SSS--S--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
--S-----------------SS-S--S--SSSS----------S---S-S------SS-S-----S------S--S--SS
----------------------------S-S-SSS------SS---------S-SSSSSSS------S--SS-S--S---
------------S-S-S---SSSSSSSSSSSSSSSSSSSSSSSSS--------------------------S-S------
--S--S----------S---S------------------------------------S----------------------
-------------SS-------S----------S--S-S-----SS--S----------------S--------------
-----------------------S----S-------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_111
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-----------AGCGTTCCGGCTAAATCTGT-------------------------------------------------
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>reverse_2196
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-----------------------------------CTCGCCACTCTGACCAAGTC-------------------------
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