>input_sequence_72406
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-------------------ATGTACCCGAAGCCGGAGGATGGTCCGGCGACGGGCTTCCCGATGAGCGGCGGCACGGGCG
TAGGCGTTGGCGGCGGCGGTGGCCCGGGCGCGTACTACCAGGCGGCGCCGGCGACAGCGGCGTTCGCGATGCAGGC---G
CAGGCGCCGCTGGCGGCGTGGTCGACGGGGCTGTGCGACTGCTTCGACGACTGCGGCAACTGCTGCATCACGTGCCTGTG
CCCGTGCATCACGTTCGGGCAGGTGGCGGAGATCATCGACCGCGGGTCGACGTCGTGCGGGGCGAGCGGCGCGCTCTACG
CGCTCATCATGCTGCTCACCGGCTGCCAGTGCGTCTACTCCTGCTTCTACCGCTCCAAGATGCGCGCGCACTACGGCCTG
CAGGAGAGCCCCTGCGCCGACTGCTGCATCCACTGGTGCTGCGAGCCCTGCGCGCTCTGCCAGGAGTACCGCGAGCTCAA
GAAGAGGGGCTTCGACATGAACCTCGGTGCGCACCTAC----TGCTAATGTTATCTCTCTATATGTCTATAT--ATGTAA
CCTAATTGGATTAGTTATGTGCTAACCGGCGACATGAACC--------TCTGCATGCAGGATGGCACGCCAACATGGAGA
GGCAAGGACGCACTCCGGCGACCATGCCACCCCTCATGCACCCAGGGATGACCCGTTGA---------------------
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------------------
>chr1A_1_TraesCS1A01G390500
ATGTTACATACATCCGTTTGTGAGAGAAGTTTTTTCAAACGAATGGAGTATTATTTTTAACTCGAAGGCGGCCGTGGAAA
AACAATCCCTGTCAATGAGGTCACCGGAGACGAAGACAAAATAACATCAATAGTATGAATACTGGAAGAGGAATGGACAC
AATCAATCGAAGAAGAAACCTCAAGAGACTGATCACGGATATAGATAATACTTCCTTCGTAAAGAAATATAAGAGCGTTC
AGACAGAGGGGGTAATAAAGAAGAGGGTCATCGGTGGC-ATGGTTCTATGCCAGATAACGAATAACTAGATCATGCTGTT
TCGGCCCCTCATTTTCTTTTTGCGGGCTGTTTCGGCCCTGCATGGGCACATCACTTGCAAATTGCAA-TGCACTTGCGTC
ATATCTC-------------------------------------------------------------------------
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-----------------------------------GGTGTGGTTTGAATGCTGTAGGTTGAATTGAGCGGTGCCTAATCC
GATAGCGACCCGTTCGTTCAAACCAAATTAAACTTGCCCCGTCGTAACGGGCGGCCGGCGGACGACGACGAGTAGGTTGA
CCGCCGAGTCGCCGGCTGAGCTGGTGCCATCAGTCAGTGCA---TGCAGTACATCACTTGTCCCGCCACGACGTGGACTT
GCGCCCCCACCACCACACGCATCTCCATCTCCGGTCTGCCCCGGCTCATCTC----------------------------
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---------------------CTCAGTCTTCACGCCTCACGCCAGAAATGTCGCGAGCCAGA------------------
--------------CGACGCTCGACGTAGTTTCTTAGAAATGCAGACGATGCTCACGCTGTCATTGTCATGTCAACCAGT
GGACATGAACGGCCAGCCACAGCCTGTATC----------------GG--TGGACCGTATGCATGGTTATCATCGCGTGG
CCGTGGTGTGTT-GCGTCGTCGATCAGGCAGCCAGTACTAGTCCATAAAATACCCCTCGCCCGCCCCGTCCGGAACAAGT
CCAAGGCCATCCACGGCACAACCGCCAACGGTG------GTGGGCAGTTTCGCTTGGCTCCTCCTGTCTTGTAGTAGTTC
GCGTGCACAAGAGGTCGCCATGTACCCGAAGCCGGAGGATGGTCCGGCGACGGGCTTCCCGATGAGCGGCGGCACGGGCG
TAGGCGTTGGCGGCGGCGGTGGCCCGGGCGCGTACTACCAGGCGGCGCCGGCGACAGCGGCGTTCGCGATGCAGGC---G
CAGGCGCCGCTGGCGGCGTGGTCGACGGGGCTGTGCGACTGCTTCGACGACTGCGGCAACTGCTGCATCACGTGCCTGTG
CCCGTGCATCACGTTCGGGCAGGTGGCGGAGATCATCGACCGCGGGTCGACGTCGTGCGGGGCGAGCGGCGCGCTCTACG
CGCTCATCATGCTGCTCACCGGCTGCCAGTGCGTCTACTCCTGCTTCTACCGCTCCAAGATGCGCGCGCACTACGGCCTG
CAGGAGAGCCCCTGCGCCGACTGCTGCATCCACTGGTGCTGCGAGCCCTGCGCGCTCTGCCAGGAGTACCGCGAGCTCAA
GAAGAGGGGCTTCGACATGAACCTCGGTGCGCACCTAC----TGCTAATGTTATCTCTCTATATGTCTATAT--ATGTAA
CCTAATTGGATTAGTTATGTGCTAACCGGCGACATGAACC--------TCTGCATGCAGGATGGCACGCCAACATGGAGA
GGCAAGGACGCACTCCGGCGACCATGCCACCCCTCATGCACCCAGGGATGACCCGTTGATCGATCTGTGCTTTTGTTCTC
C----------AAGACACGTCTAAAGTGTGCGTCCTTATGTAGTAGAA-GAAGTAATCTCCATGCTATTCGGCGTCTTTG
CGGTGCCGGTGT-TACCTACTTTGCAGGTTTCTG--TACAATACTGTGTAACACACGACTACTACTTTGTGTAATGTTAC
TGCAAACGTATTTTCCCTTTTTTTTATCTAGAATATGCATGAGTATG-------------------------------CG
TATTTTATATTAAGAGGAGAAGAGGATAAGGGCACCTCCAACGACGATCCGTAAATTTTCTCCTGCATCCGTCTGCGGAC
AGGGGCACCAGTCCACATAGACGGATGCGGGAGGACGCCATCCAACGCTAGCCGCATACATCCTGCCAACAGTTCGAATT
AACTAGACGAAATTCGTTCAAACAGATTAAAAACTATATTTTTATTTTTGAAGTTTGGATAAACCAAACACGATCAGATT
TCATATAAACATAG-CGAATTTCGT--------------------TACATTTATATCAATTAAG-CGGTGCTAGTCCGGC
TCTGGAGGTATAATTAATACCTAATCTAAATGGTCGTCG--------TCCCTTTGTACGACCATGAACCCAGAGAACCAA
AGCTTCGCTTTTTCCAGCTCCG-CCTCGGCGCTCTCCAGCTCTGTCTCCATAACCTCCGCCTCCGGAGCCCCAGGAAGCG
AAGCTGTCCGCCTCCACGTCGCCGCCAA-GCGGCTAATCGTCCGACGATGTTCAACCCACCAAACTTGGCGTCAAC-GGG
TGGGGAGGAGCGGTGTCCTTCTTGGGACCCGAGCGGCGGTGACCTACCGTACACTACTCTTCCTCGCTGCCGGCGGCGCC
CGCGGACATGACAGCCTCGTGCTCGTGGCGGCGGGGTGCGGCCTCGATGTTGTCCTTCTCCTCCTCGTCAGTCTCGCCGA
ACAGCGCCTCGCTCGCCTCACCGCACTCCTTGGACGCGGCGGCTACCTCCGCCACCCGCTATCGGTACCGCCAGCTGG-C
GAGGCGGATCTTGCGGGC
>chr1B_247
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------AGGGGGTAATAAAGAAGAGGGTCACCGGTGGCAATGGTTCTATGCCAGATAACTAATAACTAGATCATGTTGTT
TCGGCCCCTCTTCGAGAGG------------------CTGCATGGGTACATCACTTGCAAATTGCAAATGCACATGCGTC
ATA--TC-------------------------------------------------------------------------
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-----------------------------------GGTGTGGTTTGAATGCTGTTGAATAGACCGGCCGGTGCCTAATCC
GATAGCGACCCGTTC----AAACCAAATTATACTTGCCCCGTCGTACTGGGCGGCCGGCG------GACGAGTACGTTGA
CCGCCGAGTCGCCGGCTGATATCGTGCCATGAGTCAGTTGTCAGTGCAGTGCACCCCTCGTCACGCTACGACGTGGACTT
GCGCCCCCACCATCACACGCATCTCCATCTCCGGTCTCCCCC--------------------------------------
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----------------------TCAGTCTTCACGCCTCGCGCCAGAAAAGTCGCGAGCCAGACC-AACACCCGTAGATCA
AGTATAGATCACCACGACGCTGGACGTAGTTTCTTGGAAATGCAGACGGCGCTCGCGCTGTCATTGTCCTGGCAACCGGT
GGAGATGATCGGCCGGCTGACC---AGAGAGACGACGCGAGCATTGGG--TGGGCTGTATGCATGGTTATCATCGCGTGG
CCGTGGTGTGTT-GCGTCGTGGATCAGGCAGCCAGC---AGTCCATAAAATACCCCTCGCCCGCCC--------------
CCAAGGCCACCCACGGCACAACCGCCAACGGTGACGGTGGTGGGCAGTTTCGCTTGGCTCCTCCTGTCTTGTAGCAGTTC
GCGTGCACAAGAGGTCGCCATGTACCCGAAGCCGGAGGACGGCCCGGCGACGGGGTTCCCGATGAGCGGCGGCACGGCCC
GCACG---------GGCGGCGGGCCGGGCGCGTACTACCAGGCGGCGCCGGCGACGGCGGCGTTCGCGATGCAGGCGGCG
CAGGCGCCGCTGGCGGCGTGGTCGACGGGGCTGTGCGACTGCTTCGACGACTGCGGCAACTGCTGCATCACGTGCCTGTG
CCCGTGCATCACGTTCGGGCAGGTGGCGGAGATCATCGACCGCGGGTCGACGTCGTGCGGGGCGAGCGGCGCGCTCTACG
CGCTCATCATGCTGCTCACGGGGTGCCAGTGCGTCTACTCCTGCTTCTACCGCGCCAAGATGCGCGCCCACTACGGCCTC
CAGGAGAGCCCCTGCGCCGACTGCTGCATCCACTGGTGCTGCGAGCCATGCGCGCTCTGCCAGGAGTACCGCGAGCTCAA
GAAGAGAGGCTTCGACATGAACCTCGGTACACACCTACTGCATGCTAATGTTATCTCTCTATGGAGTATATCAGTATGTA
TCTTCGACATGAAC--ATGTGCTAATCGGATTGGTTCATCTATCTATGTCTGCATGCAGGATGGCACGCCAACATGGAGA
GGCAAGGACGCACCCCGGCGACCATGCCGCCCCTCATGCACCCAGGGATGACCCGTTGATTCATCGCTCCGTCCGTGCCT
TTTCCTCTCAAAACACACATCTAAAGTGAGCGTCCTTGTGTAGTA-----------------------------------
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>chr1A_249
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--------GGGATAATAAAGAAGAGGGTCACCGCTGGCAATGGTTCTATGCCAGATAACTAATAACTCGATCACGTTGTT
TGGGCCCCACTTCGACAGG------------------TTGCATGGGTACATCACTTGCAAATTGCAA-TGCACTTGCGTC
ATATCTC-------------------------------------------------------------------------
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-----------------------------------GGTGTGGTTTGAACGCTGTAGGTTGAATTGAGCGGTGCCTAATCC
GATAGCGACCCGTTCGTTCAAACCAAATTAAACCTGCCCCGTCGTACCGGGCGGCCGGCGGACGACGACGAGTAGGTTGA
CCGCCGAGTCGCCGGCTGAGATGGTGCCATCAGTCAGTGCA---TGCAGTACATCACTTGTCCCGCCACGACATGGACTT
GCGCCCCCACCACCACACGCATCTCCATCTCCGGTCTCCCCCGTCTCGTGCCCTCAGAGCTTCTCCAGCCGTGCCCCTAA
CAGGCCACTCAAAGCCGTTTTTTAGCGCCGGTGCCAAAAAATCGGTCCAGTCGTGTCCCCACGAGCATGTTTTTCGCTGG
ATTGGGCCAAAATTGATGCCGGCGCACTCAACCCGAACCCGGCGCGCTGGGGAGCGCCCGGGGGCGCCGGCTCGAACGTT
TTGGCGCGAAAGAGTGGCGGGACCGACACGTCAGCGAGACGAAGCCTTGTCGTCCTCATCATCTCGGTTTTCCCGCGGAA
AATCAATGCCAAGGCTGCCGCCGGTCAACCTGCCATTGATTCATGGGCGGCGAAGTGCGGCGACGCCGCCCCGCCTTCCG
CCCCGCGTTCACACGCGGCCGCCCCCGAGCCACTATAAAAGCCGCCCCTGGCCGCGCCGGTGAGGCACCAATCCCCCCCT
CCTCGCCGCCACACTTCCTCCCCTCTCTCCGCCGTTCGAGCCCCTCTCTCTCCCCCCGGCAACCATGAGCGCGAGTTACC
CCGGCGACGCGGCGGCGGCCGAAGGTTTCGGCCATCGCTCGCTGCATGAGTGGGAGGCCCACCTCCTCCACGAGGTCAAC
TACCCCGCGCCGCCCGACGTACGCGCTCCGTCGCGGTGGAGGCTCAACGCCGGCGGGGTCCCTGTCCCCCTCTGCCCGTC
CCCGAGGCGCCCACCTATTTCCACGCCGAGATCGAGCGTGCGCGGGCGTCCCTGACGGCCGCGGAGCGCTCCTGGAGTAC
GCCGCCGACAACCACGCGGCGTGGGCGGCGTACTTCGAACGCCGGCAGGAGGTGCGGCTCGCCTCCACCAACAACGCGCC
GGCGCCGCGCGGCCGCAACAACAGCGAGGGCCGCCGCCTGTGGTGGGGCGTCCCGGGCCGCATGCTTAGCGACGTCCTCG
CGCACCTCGAGGGCGGCAACGACCCGCCGTTCGAGTACCCGACCACTCGGAGCGGCGGCGCGTGGCTGCCGAGGAGGATG
ATGGGATGGTCATCCTCCTCTTCCTCCTCCTCCTCCCGATCCCCCTCTCACTCCTCCGTCACGCCGGCGTTTGTCAGTGT
CAAGACAGAGCCGTCCGAGACACCGCTCGATAGGCGCACCCGCGGCGCCGGCCTCGTCATCAACGACAGCGGCCGTGGCT
CCTCCTCCTCGGCCACTCCTCGCCTGGTCAAGCCGAAGAGGGAGCCAGGGCTGGCGACGGTGAATCCGGAGCCGGGGCTC
ACCGCCGTGAAGCCGGAGCCTGCTCTCGCCGAGGAGGCCAACCAAGAAGAGGCCGCCTTGCAGTGGGCGTGCGAGGACTA
CGCCCGCATGGAGCTGGACCGCCAGCGCCGCGCCCTGGAGGAGATCGCCGAACGCCGCCGCCGTGAAGCAGCGCGCCGGG
GCGAGGGGTCGAGCAGCGGTGCCGGCCGTGTCAAGGAGGAGAAGCAGGAGGACGACACCGGCGATGACTACGCCCTTCTC
AGCACCTACTTCGGCCCGTAGTTTAGGGTTTTTTTTCGTGCATTTTATTCGTGTAAAAAATGTCTAAATTTCGCCGAAAT
ATGTCGTGTTTGTTGAAATTTGGCTTAAATATGTCGTGTTTGCTGAAATTTGACCAAACTGTGGGGACGTCTAGGGCCCG
ACGGCTGGGGACGTACTCGCCCCCACGCCGAAAAAAACCGTTGGCTCACCCCCAAGAGGCGATTTTCGGCGCGTCTTAGG
GGCGCAACGGCCGGAGATGCTCTCAGTCTTCACGCCTCACGCCAGAAAAGTCGCGAGCCAGACCAAACACCCGTAGAGTA
TAG----------ACGACGCTCGACGTAGTTTCTTAGAAATGCAGACGGCGCTCACGCTGTCATTGTCATGCCAACCAGT
GGACATGAACGGCCAGCCACAGCCTGTATC----------------GG--TGGACTGTATGCATGGTTATCATCGCGTGG
CCATGGTGTGTT-GCGTCGTCGATCAGGTAGCCAGTACTAGTCCATAAAATACCCCTCGCCAGCCCTGT-----------
CCAAGGCCATCCACGGCACAACCGCCAACGGTG------TTGGGCA----------------------------------
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>chr1D_302
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--------------------------------------------------------------TAACTAGATCATGCTGTT
TCGGCCCCTCTTCGACAGG------------------CTGCATGGGTACATCACTTGCAAATTGCAA-TGCACTTGCGTC
ATATCGGTGTGGTTCGTCTTGCACGGAGCTTCAGTGGAAATGTCAAGTCATGTCTGGCCGACAGATGCTACGCTTTGTCA
TGCCTGTTCGGCAGGTGCTACGCACGACAGATCTTTCAAAGACTTCAAGCTGTGTCGGCTGGTGGTACTTGGCGGTATGG
CGCTGAGGTGTACCGGCGGCGACCGCGACGTGCTCAGCAGTTCGCGCGTAGGGAGGTGGTGCCGTCGACGGTAGCTAGAC
CGGGCAAGGTTGATGCGTCAGTACAGCTCTGAAGATGGAGTGTTGGCAGTTGGCGGCGGCGGCCTCTGAGAGCGCGCCGG
ACCAGTGTGTGCCCCATACCCGGCAAGTGGCTTGGTTGGGGCATCAGGTCTTAGATGTTAAGTTTGGCTGCGAGGCTTGT
TTGGTATTAGGCCCAGACTATTAGCATCCCTACATCAACTGGATAGGAGTAGCAATAGTTGTTGTCTAGACGGTGGCTTC
AGACTTACTGTTATATCTTTTTGTAAGGTCTTTGTGAATAATTAATAAAGTGGCTGCATGCATCGCCCAGATAGTACAGA
GGCCGGGGGTCCTTCTTCTTTAAAAAAAAAATATTGGTGTGGTTTGAATCGT----GTTGAACAGAGCGGTGCCTAATCC
GATAGCGACCCGTTCGTTCAAACCAAATTAAACTTGCCCCGTCGTACCGGGCGGCCGGCGGACGACGACGAGTAGGTTGA
CCGCCGAGTCGCCGGCTGAGATGGTGCCATCAGTCAGTGCA-------GTGCACCCCTCGTCACGCCACGACGTAGACTT
ACGCCCCCACCACCACACGCATCTCCATCTCCGGTCTCCCCCATCTCATGCC----------------------------
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---------------------CTCAGTCTTCACGCCTCGCGCCAGAAAAGTCGCGAGCCAGGCC-AACACCCGTAGAGTA
TAGG-----------GACGTTCGACGTAGTTTCCTGGAAATGTATGCCATGGCAACC-------------GCCAACCAGT
GGACATGAACGGCCGGCCCGACCCAAGGGAAACGACGCGGGCATTATGGCTGGACTGTATGCATGGTTATCATCGCGTGG
GCGTGGTGTGTTTGCGTCGTCGATCAGGCAGCCAGT---AGTCCATAAAATACCCCTCGCCCGCCCCGTCCGGAACAAGG
CCAAGGCCATCCACGGCACAACCGCCAACGGTG------TTGGGCAGTTTCGCTTGGCTCCTCCTGTCTTGTAGCAGTTC
GCGTGCACAAGAGGTCCCCATGTACCCGAAGCCGGAGGACGGTCCGGCGACGGGCTTCCCGATGAGCGCCGGCACGGCCC
GCACG---------GGCGGCGGGCCGGGCGCTTACTACCAGGCGGCGCCGCCGACGGCGGCGTTCGCGATGCAGGCGGGG
CAGGCGCCGCTGGCGGCGTGGTCGACGGGGCTGTGCGACTGCTTCGACGACTGCGGCAACTGCTGCATCACGTGCCTGTG
CCCGTGCATCACGTTCGGGCAGGTGGCGGAGATCATCGACCGCGGGTCGACGTCGTGCGGGGCCAGCGGCGCGCTCTACG
CGCTCATCATGCTGCTCACGGGCTGCCAGTGCGTCTACTCCTGCTTCTACCGCGCCAAGATGCGCGCGCACTACGGCCTC
CAGGAGAGCCCCTGCGCCGACTGCTGCATCCACTGGTGCTGCGAGCCATGCGCGCTCTGCCAGGAGTACCGCGAGCTCAA
GAAGAGAGGCTTCGACATGAACCTCGGTACGCACCTAC----TGCTAATGTTATCTCTCTATATGTCCATATGCATGTAA
CCTAATTGGATTAGTTATGTGCTAACCGGCGACATGAACC--------TCTGCATGCAGGATGGCACGCCAACATGGAGA
GGCAAGGACGCACTCCGGCGACCATGCCACCCCTCATGCACCCAGGGATGACCCGTTGATCGATCTGTGCTTTTGTTCTC
T----------AAGACACGCCTAAAGTGTGCGTCCTTGTGTAGTAGAAAGAAGTAATCTCTATGCTGTTCGGCGTCTTTG
CGGTGCCGGTGTCTACTTACTTTGCAGGTTTCTGTATACAATACTGTGTAACACACGACTACTACTTTGTGTAATGTTAC
TGCAAACGTATTTTCCCTTTTTT--ATCTAGAATATGCATGAGTATGTCACCCGCAAAAAAAAAAATGCATGAGTATGCG
TATTTTATATTAAGAGGAGAAAAGGGTAAGGACACCTCTAACGGCGACCCGTAAATTTTCTCCCGCATCCGTCCGCGGAT
AGGGGCACCAGTCCACAGAGACGGATGCGGGAGGACGTCATCCAACGCTAGCCGTATACATCTTGCCAACAAATCGAATT
AACTGGACGAAATTCCTTCAAACAGATTAAAAACTAGA-TTTTATTTTTGAAGTTTGGATAAACCAAACATGGCCAGATT
TCATATAAACAAGA-CGGATTTCATATAGACACGACGGATTTCGTTATATTTATGTCAATTAAG-CGGTACTAGTCCGGC
TCTGGAGGTATAATTAATACCTAATCTAAATGGTCGTCG--------TCCCCTTGTACAACCATGAACCCAGAGAACCAA
AGCTTCGCTTTTTCCAGCTCCG-CCTCGGCGCTCTCCAGCTCTGCCTCCGTAACCTCTGCCTCCGGAGCCTCGGGAAGCG
GAGCTGTCCGCCTCCGCGTCGCCGCCAA-GCGG--------CCGACGATGTTCAACCCACAAAACTTGGCGTCAAC-GGG
AGGGGAGGAGCGGTGGCCTTCTTGGGACCCGAGCAGCGGTGACCTACCGTGCACTACTCTTCCTCGCTGCCGGCGGCTCC
CGCAGACATGACGGCT----------GGCGGTGGGGCGCGGCCTCGACATTG---TCCTCCTCGTCGTCGGTCTCGTCGA
ACAGCGCCTTGCCCGCCTCACCGCACTCCTTGGACGTGGCGGCCACCTCCGCCACCCGCTATCGGTACCGCCAGCTGG-C
GAGGCGGATCTTGCGGGC
>chr1B_2104
CAAAC---------------------------------------------------------------------------
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----------------------------------------------------------------------CGAACGGATT
TCGTATAAACACGTCCAGATTTCAT--------------------TACATTTACATCA---AAG-CGGTGCTAGTCCGGC
TCTGGAGGTATAATTAATACCTAATCAAAATGGTCGCCAACGCCTGTTTCCCGTGTCTGGCCATGAGCCCGGAGAACTGA
ACTTTCGCCGTCTCCGGTTCCG-CCTCGGCGCTCTCCAGCTCTGTCTCCGTAACCTTCGCCTCCGGAGGCCCGGGAAGTG
AAGCTGTCCGTCTTCACGTCGCCGCCAA-GCGACTAATTGGCCGACGGTGCTGAGCCCACCAAGCTTGGCATCGAC-GGG
AAGGGAGGAGCGGTGGCCTTCCTGGGACATGAGCGGCGGCGACCTAACATGCACTACTCCTCCTCGCTGTCGGCAACGCC
AGCGGACGTGTCGGCTTCGTGGTCGTCGCGGCGGGGCGCAGACGCGGAGATGTCCTCCTCCTCATCGGCGGTCTCGCTGA
ACACCGCCTCGCCTGCGTCGTCGCTCTCGTTATAGGCGGCCACCACCTCTGCCACCCGCTAACGGTACCGCCAGCGGG-C
GGGGCGGATCT-------
>chr6D_2104
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----------------------------------------------------------------CAAACACAACCCTATT
TCATATAAACATGA-CGAATTTCAT--------------------TACATTTGCATCA---ACTACGGTACTTGTCCGGC
TCTGGAGGTATAATTAATACCTAATCTAAATGGTCGCCCGCGCCCATTCCCCGTGTCCGACCATGAGCCCCGAGAAGAGA
AGCTTCTCCTTCTCCAGCT-CCACCTCGGCACTCTCC---------------AACCCCGCCTCCGAAGACCCAAGAAGTG
AAGCTGTCTGCCTCCACATTGTCGCCAA-GTGGCTAATCGGACGTCGATGTTGAGCCCACCAAGCTTGGCGTTGAC-GCG
AAGGGAGGAGCGATGGCCTTCCTGGGACCCGAGCGGCGAAGACCTACCGTGCACTACTCTTCCTCGCTGCCGGCGGCGCC
CACGGTTGTGCCGGCTTCGTGGTTGTGGCGGCTGGGCGCGGCCTCGACGATGTCCTCCTCCTCCTCGTCAGTCTCACCGA
ACAACGCCTCCCTCGCCTCATCGCACTCCTTGTAGGTGGCCGCCACCTCTGCCACCCGCTGGAAGTACCGCGAGCGGGGT
GAGGCGGATCTTGCGGGC
>chr3D_2104
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----------------------------------------------------------------CAAACACAACCGGATT
TCATATAAACATGA-CGAATTTCAC--------------------TACATTTATATCAACTAAG-TGGTGATAGTCCGGC
TCTGGAGGTATAATTAATATCTAATCTAAATGGTCGCCGGCGTCCGTTCACCTTGTCCGGCCATGAACCTCGAGAACTGA
AGCTTAGCCTTCTCCAGCT-CG-CCTCGGCGCTCTCCAACTCTGCCTCCATAACCTCCACCTTCGGAGCCATGGGAAGCG
AAGCTGTCCGCCTCCACGACGCCGCCAA-GTGGCTAATCGG-CGACGATATTCAGCCTACCAAGCTTGGCTCCAAC-TAG
AGGGGAGGAGCAGTGGCCTTCCTAGGGGCCGAGTCGCGGTGACCCATCGTGTAGTACTCTTCCTTGCTGTCGGCGCCGCC
CGCGGATATGCCGACTTCATGGTCGTGATGGCGAGGCACGACCTTGGCGATGTTCTCCTCCTCATCGCCGGCCTCGCCGC
ACGCC---------ACCTTGTCACCCTCCTTGTAGGTGGCCGCCACCTCCGCCACCCGGTGGCGGTACCGCTAGTGGG-C
TAGGCGGATCTCGCGGGC
>chr2B_2104
CAAAA---------------------------------------------------------------------------
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----------------------------------------------------------------------CGAGCAGATT
TCATATAAATGCATCTGGATTTCAT--------------------TACATTTACATCA---AAG-CGGTGCTAGTCCGGC
TCTGGAGGTATAATTAATACCTAATCTAAATGGTCGCCGGTGCCCGTTCCTCGTGTCCGCCCATGAGCCCCGCGAACTGA
AGCTTCACCATCTCCAGTTCCG-CCTTGGCACTCTCCAGCTCTGGCTCC---------------GGAGGCTCGGGAAGTG
AAGTTATTCGCCTCCACATTGCCGCCGA-GCAACTATTCGGCCAACGATCTTGAGCCCACCAAGCTTGGCATTGAC-GGG
AGGGGAGGAGCGGTGGCCTTCCTGGGACATGAGCGGTGGCGACCTATCTTGCACTACTCTTCCTCGCTACCGGCGACGCC
CACGAACGGGCCGACTTTGTGGTCGTTGTGGCGGGGCGCGGACTCGGCGATGTCCTCCTCCTCATTGTTGGTCACGCCGA
ACATCGCCTCACCCGCGTCATCGCTCTCCTTGTAGGCGGACGCCACCTCTGCCACCCGCTGTCGGTACCGCCAGCGAG-T
GACGCGGATCTCACGGGC
>chr3D_2105
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-----------------------------------------------------------------AAACACGTCTGGATT
TCATATAAACATGA-TGGATTTCAT--------------------CACATTAACATCA---AAG-CGGTGCGAGTCGGGC
TATAGAGGTATAATTAATACCTAATCTAGATGGTCGCCGGTGCCCATTCCCTGTGTCGGGCCATGAGTCCCGAGAACTGA
AGCTTCGCCATCTCCAGTTCCG-CCTCGATACTCTCTAGCTCCACCTCCGTAACCTCCGCCTCTGGAGGTCCGGGAAGTG
AAGCTGCCCGCCTCCACGTCGCCGCCAAAGCGACTAATCGGCCGAAGATGTTGAGCCCATCAAGCTTGGCATCGAC-GGG
ACGGGAGGAGCGGTGGCCTTTCTGGGACACGAGCAGCGGGGACCTACCATGCACTACTCTTCCTCGCTGCCGGCGGCGCC
CACGGACTTGTCGGCTTCGCGGTTGTCACAGCAGGGCGCGGACTCGGTGATGTCCTCCTCGTC---GTCGGTCTCGTCGA
ACACTGCCTCGCCCA------CGCTCTCCTTGTAGGTGGTTGCCACCTCCGCCACCCGCTGGCGGTACCGCCACCGGG-C
GAGGCGTATCTTGCG---
>chr4B_2117
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-----------------------------------------------------------------------------ATT
TCATATAAACATGA-CGTATTTCAT--------------------TATATTTATATCAACTAGG-CGGTGCTAGTCCGGC
TCTGGAGGTATAATTAATACCTAATATAAATGGTCGTTGGCGCCCGTTTCCCGTGTTCGGCCATGAACCTTGGGAACTGA
AACTTC----------------------GCGCTCTCTAGCCTTGCCTTCGTAACCTCTACCTCCGGAGCCACAGGAAGCG
AAGCTGACCGCCTCTATGTCACTGCCAA-GCGGCTAATTGGCCGACGATGTTCAGCCCACCAAGCTTGGCTTCAACGGGG
AGGGAAGGAGCGATGGCCATCTTGGGACCCGAGCGGCAGTGACCTACCATTCACTACTCTCCCTCGTTGCCAGCGGCGCC
CGCGGGCTTGCCGACTTCATGGTCATGGCGGCGGGGCGCGGCCTAGGAGATGTCCTCCTCCTCCTAGTCGATCTCGCCGA
ACACCGCCTCGCCCACCTTGTTGCCCTCCTTGTAGGCGGCCACCACATCCGCCACTCATTGGCGGTACCGCCAGCAGG-T
GAGGCAGATCTCGAGGGC
>chr5D_2128
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--------ACATGC-CGAATTTCAT--------------------TATATTTACATCAACTAAG-CGGTGCTGGTACAAC
TCTGGAGGTATAACTAATACGTAATCTAAATGGTCGCCGGCGCCCGTTCCCCGT--CCTACCACGAGCCCCGAGAACTGA
AACTTCGCCATCTCCAGCTCCG-CCTCGGCGCTCTCCAGCTCTGCCTCCGTAACCTC-GCCTCCGGAGCCCCGGGAAGCG
AAGTTGTTCGCCTCCATGTCGCCACC-AAGCGGCTAATCGACCGACGATGTTTAGCCCACCAAGCCTGGCTTCAACGCA-
AGGGGAGGAGCGGTGGCCATCTTGGGACTCAAGTGACGGCGACCTACCATGCACTACTCTTCCTCGTTGCCGGCGACGCC
CGCGGACGTGCCTGCTTCGTGGTCGTCGCAGCGAGGCGCGGCCTCGGCGATGTCCTCCTCCTCCTCCTCGGTCTCGCCAA
ACACCGCCTCGCCGGCCTCGTCGCACTCCTTGTAGGCGGCCGCCACCTCCGCCACCCGCTGGCGGTACCGCCAGCGGG-C
AAGGCGGAT---------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS------------------------S----------------------------S--------------------
----------S-SSS-SSSSSSSSSSSSSSSSSSSSS---------S---------------------------------
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----------------------------------------------S---------------------------------
--------------------S-----------------------------------------------------------
-------------------------------------S-----S-----SS-----------------------------
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------------------------------------------------S-------------------------------
-----------------------------------------------------------------------S--------
-------------------------------------------------------S------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------S-----
---------------------------------------S-------------------------------------S-S
SSSSSSSSSSSSSS-----S--S--------------------------------S------------------------
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-------------------S---------------------------------S-------------------------S
-----------------------------------------------S--------------------------------
------S---------------------S--------------------------------------S------------
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S------------------------------------S----------------------S-----S-------------
----------------S---------------------------------------------------------------
-----------------------SS-------------------------------------------------------
---------------------S---S-----S------S----S---S---------------S---------S-----S
-----------------S-------------------S----------------S-------S--------SS-------
----S----------S--------------------S-S----------------------------------S------
-------------S---------S--------------------------------------------------------
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----------------------------------------S---------------------------------------
S--------------S----------------------------------S-----------------------------
------------S--S-----S--------------S-------------------S-----------------------
-------------------------------------------S------------------------------------
------------------
>forward_354
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--------------TCTTTTTGCGGGCTGTTTCG----------------------------------------------
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>reverse_4346
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-------------------------ATAAGGGCACCTCCAACGAC-----------------------------------
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------------------
