>input_sequence_72404
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-----------------------------------------------ATGGCCGGCGGGTCGCCGTGCGCGTCCTGCAAG
CTGCTCCGGCGGCGGTGCACCAAGGACTGCATCTTTGCCCCCTTCTTCCCCGCCGACGACCCCCACAAGTTCGCCATCGT
CCACAAGGTCTTTGGCGCCAGCAACGTCAGCAAGATGCTCCTGGTACGTG--CATACTCCTACGTAGCTAGATGATATTT
CATGCAATGACGCGCGGAGACACGCAGACGCTAACATATGAGATGCCATTACTTGCAGGAGCTGCCGGTGCAGCAGCGCG
GGGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGCGCGGGTGCGGGACCCGGTGTACGGCTGCGTGGGGGCCATCTCC
TTCCTGCAGAACCAGGTGTCGCAGCTGCAGATGCAGCTCGCCGTCGCGCAGGCCGAGATCCTGTGCATCCAGATGCAGCA
GCGAGACGGCTGCCAGTCCCAGGACGACGCAGGGCGAAGCGACGGCCACAGCCTGGCGGCCATGCAGCAGATGGTCGTCG
ACGACACCGCGGCGGCAGAGGCTTTCCTGATGCAGAACGGCGGCGGCGGCTTCCCGCCGCAGCTGATGAGCAGCTACGGC
GGCGCGCCGGCCTCCAACGTGCATCACTACGGGCAGCAGGACCACCTCAAGAGGGAGTCCCTGTGGACGTAG--------
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>chr1A_1_TraesCS1A01G222300
CTGTACAAAGTCGGGTAGTTAAATCTTATTGCCAAAAAAGAAGAAGAGGCGGGTAGTTAAGTGTCATGGATTGGAGCCAC
AGCAGATGAAGGAGAAACACGACCTCGGGACAAGGGAATTCCGGAAGATTCTTGCCTCAGCAACTAGGTGCACCGTTGGC
TTTACGCGACGGAAGGAGTAAGCTTCACACTGCTGGATGGATTCTTTGCTTCAGGTCCACGATCTCATCTGCTCACGTAC
GTACGTTGCTTGTATCCCTGGTCGACAGTAAACATATATACTAGTACTAGTACTCGTAG----TTGCCTAAGCCACGTCC
TGTACACACTGCACCGTTGGTTCACTTTAGGCCTTATCAATGTCGTAGACGTTACTTACATGTATATATGCTATATATAC
AGCCTACAGCACAAGTAAATCCGGCCGTCACATGCACGCACGTAAATATGGTAATCACCCGAGCGACATGACATTCTGAC
AGAATTAATTGCGTGGTTTGCGTTGTCCTGGCTAAGATTCCTTATTGGTAATTAACGGCGACTTTGATGCCCTCGTGTCC
AATGGAAGCATCACCCTCTGCCACACTTCGCCTCCGTGAAAAATTATGTCTGTGCTGTCTAGATTAATTAAGCTACCCTT
AGTCCC-TTACCCTTTACTTTCTTCAAGTGATCCAGCTACTATGTCAGAGGCAGGGCATCTCTTGAGAAACTAGCCAACA
GCGCTGTACTAATTACCCTTGTCTCTCTCGGGCGTGGAGTCTCTCTCAACAGCACACACATGCGTCGTCGTCGTCGTCGA
CCGATATAAATAACTGCTCGCTTCGCACACTCCGGTCGCCATCGAGCTCCTTGTTGCTGAACTCGCTTCTCTAGCTCTAA
GC--CTCTAGTTGCCCAAGCTGGCAGGCTCAAGTGCTCTAGCTCCTCCTAACAGAAACTACACTAGAGATCTCCGGCCGG
CCGCCGGCGGCGCTGATACACTGCAGGCACATACGACGGTCGCGTTCATGGCCGGCGGGTCGCCGTGCGCGTCCTGCAAG
CTGCTCCGGCGGCGGTGCACCAAGGACTGCATCTTTGCCCCCTTCTTCCCCGCCGACGACCCCCACAAGTTCGCCATCGT
CCACAAGGTCTTTGGCGCCAGCAACGTCAGCAAGATGCTCCTGGTACGTG--CATACTCCTACGTAGCTAGATGATATTT
CATGCAATGACGCGCGGAGACACGCAGACGCTAACATATGAGATGCCATTACTTGCAGGAGCTGCCGGTGCAGCAGCGCG
GGGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGCGCGGGTGCGGGACCCGGTGTACGGCTGCGTGGGGGCCATCTCC
TTCCTGCAGAACCAGGTGTCGCAGCTGCAGATGCAGCTCGCCGTCGCGCAGGCCGAGATCCTGTGCATCCAGATGCAGCA
GCGAGACGGCTGCCAGTCCCAGGACGACGCAGGGCGAAGCGACGGCCACAGCCTGGCGGCCATGCAGCAGATGGTCGTCG
ACGACACCGCGGCGGCAGAGGCTTTCCTGATGCAGAACGGCGGCGGCGGCTTCCCGCCGCAGCTGATGAGCAGCTACGGC
GGCGCGCCGGCCTCCAACGTGCATCACTACGGGCAGCAGGACCACCTCAAGAGGGAGTCCCTGTGGACGTAGCTAGCTAG
TCAAAGTCAACTTGTGTAGGACTTAGCTTGTCGCTAGCTATGCACGTGTAGGGGTTTAGGTTAATTGCGTTATGATGACT
C---TTCTCTTATTTTTACATTTTGAACTCCTCTCTCTCTCTCTCTCTACCTCTCCCTGCTGGTGTTGTTGTGTTGTACT
AGGTGTTTGATCCAGAATTAGTACGAGATCCATGCTTTTCTGATCATTGTCATGTTCTTATCT-----AAAAAGGCTCAC
CGCCTGTTTTATAGATAAAGCAACAATCATTACAACCCAAAGCATACAACTCTGACACCACAACACACAT---AGGCAGG
ATACAACAATGGATAAGAACAACAACGACGTCACCCCAACCCACTCCAAGCCCGTAACGATCGCTTGAAGAT-TCGGAGT
TCTCTACCGTGACACAGGTGTCACAAAGAGACGATGATGGGCCCGATGAACTGTGGACTCCAAGACATCGCCTTCATAAA
AAGAACGACACTGGAGCACTACCATTGCCCGATTCAAAAAAGATTAAGGTTTTTACCCAGAGCAAACCGAAGGAGGAGAG
TAGCCTCGACGATGCCTTCACAAAGAGAACGACGCCCATAGTCACCGCCGTCGTTGGG---------GCCAGGCAATGAT
TACCCTTGGCACGCACTTTTCGCCTCCAAGACCACCATTGATCGCAGAACAACGGTCACCACGCCGCCCACACGGTCATG
GCCACGGGCCCGCACCTGAGCTGCGAGCCTCACTCATAGGGATCGTTACTCCCACCACCAAGGTCACCGCCCCAGCACAC
AAGACCACCCCTCCAATGCCACCAGACGTCGCTGATCGACGAAGGATATAAGCCCCCCCTTCCACCCTCAAAGCAAACCC
TTGGCAAGAAGGAGGTCGAG-CGGCCTGAACTGGGTAGGGGAGGGTTGTCGACAAGCTATA-TTTTTATGTGCTCTTTGT
GGAAGGGTTATCGACTAATTCATGTGCTCTCCGTGGGATCGATACTCTTACTTCG
>chr1D_1
CTGTACAAAGACGAGTATTTAAATCTTATATTGTCAAAAAAA----AGACGGGTAGTTAAATGTCATGGATTGGAACCAC
AGCAGATGAAGGAAAAACATGACCTCGAGACAAGGGAATTCCGGAAGATTCTTGCCTCGGCAACTAGGTGCACCGTTGGC
TTTACGCGACGGAAGGAGTAAGCTTCACACTGCTGGATGGATTCTTTGCTTCAGGTCCACGATCTCATCTACTCACGTAC
GTACGTCGCGTGTATCCCTGGTCGACAGTAAACATATATACCAGTACTAGTACTCGTAG----TTGCCTAAGCCACGTCC
TGTACACACTGCACCGTTGGTTCATTTTAGGCCTTATCAATGTTCTACACGTTACTTACATGTATACATGCTATATATAC
AGCCTACAGCACGAGTAAATCCGGCCGTCACATGCACGCACGTAAATATGGTAATCACCCAAGCGACATGACATTCTGAC
AGAATTAATTGCATGGTTTGGGTTGTCCTGGCTAAGATTCCTTATTGGTAATTAACGGCGACTTTGATGCCCTCGTGTCC
AATGGAAGCATCACCCTCTGCCACACTTCGCCTCCGTGAAAAATTATGTCTGTGCTGTCTAGATTACTTAAGCTA-----
---CCC-TTACCCTTTACTTTCTTCAAGTGATCCAGCTAG---GTCAGAGGCAGGGCATCTCTTGAGAAACTAGCCAACA
GCGCTGTACTAATTACCCTTGTCTCTCTCGGACGTGGAGTCTCTCTCAACAGCACACACATGCGTCGTCGTCGTCG---A
CCGATATAAATAACCGCTCGCTTCGCACACTCCGGTCGCCATCGATCTCCTTGTTGCAGAAGTCGCTTCTCTAGCTCTAA
GC--CT--AGCTGCCCAAGCTGGCAGGCTCAAGTGCTCTAGCTCCTCCTAACAGAAACTACACTAGAGATCTCCGGCCGG
CCGCCGGCGGGGCTGATACACTGCAGGCACATACGACGGTCGCCTTCATGGCCGGCGGGTCGCCGTGCGCGTCGTGCAAG
CTGCTCCGGCGGCGGTGCACCAAGGACTGCATCTTCGCGCCCTTCTTCCCCGCCGACGACCCCCACAAGTTCGCCATCGT
CCACAAGGTCTTCGGCGCCAGCAACGTCAGCAAGATGCTCCTGGTACGTA--CATACTCCTACGTAGCTGGATGATATTT
CATGCAATGACGCGCGGAGGCACCCAGACGCTAACATATGAGATGCCATTACTTGCAGGAGCTGCCGGTGCAACAGCGCG
GGGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGCGCGGGTACGGGACCCGGTGTACGGCTGCGTGGGGGCCATCTCC
TTCCTGCAGAACCAGGTGTCGCAGCTGCAGATGCAGCTCGCTGTCGCGCAGGCCGAGATCCTGTGCATCCAGATGCAGCA
GCGAGACGGCTGCCGGTCCCAGGACGACGCAGGACGAAGCGACGGCCACAGCCTGGCGGCCATGCAGCAGATGGTCGTCG
ACGACACCGCGGCGGCAGAGGCTTTCCTGATGCAGAACGGCGGCGGCGGCTTCCCGCCGCAGCTGATGAGCAGCTACGGC
GGCGCGCCGGCCTCCAACGTGCATCACTACGGGCAGCAGGACCACCTCAAGAGGGAGTCCCTCTGGACGTAGCTAGCTAG
TCAAAGTCAACTTGTGTAGGACTT-GCTTGTCGCTAGTTATGCACGTGTAGGGGTTTAGGTTAATTGCGTTATGATGACT
C---TTCTCTTCTTTTTGCATTTTGAACTC----CTCTCTCTCTCTCTACCTCTCCCTGCTGGTGTTGTTGTGTTGTACT
AGGTGTTTGATCCAGAATTAGTACGAGATCCATGCGTTTCTGATCATTGTCATGTTCTTATCT-----AAAAAGGCCCAC
CCT-TGTTTTATAGATAAAGCAACGATCATTACAATCCAAAGCATACAACTCTGACACCACAACACACATCTGAGGCAGG
ATACAACAATGCATAAGAACAGCTACGACATCACCCCAACCCACTCCAAGCCCGTAACGACCGCTTGAAGATGTCAGAGT
TCTCTATCGTGACAGAGGTGTCACGAAGAGACGATGCTGCGCCCGACAAACTGTGGACTCCAAGACATCGCCTTCGTAAA
GGGCACAACACTGGAGCACCACCATTGCCCGATTAAAAAAAGATTAAGGTTTTTACCCAGAGCAACCCGAAGGAGGAGAG
TAGCTGCGACGATGCCTTCACAAAGAGAACGACGGCCATGGCCGCCACCGCCGTTGGCTTGGCCCAAGCCAAGCAAGGAT
TACCCTTGGCACGCACTTTTCGCCTCCGAGACCAGCATTGATCGCAGAACAACAGTCACCACGCCGCCCACACGGCCAAG
GCCACCAGCCCGCACCTGAGCTGCGAGCGTCACTCATAGGGATCATTACTCCCACCACCAGGGTCGCCGCCCCAGCACAC
AAGACCACCCCTCCAATGCCACCAGACGTCGCTGACCGAAAAAGGATATAAGCCCCCCATTCCACCCTCAAAGCAAACCC
TTGGCAGGAAGGAGGCCGAGCCGGCCTGAACCGGTTAGGGGAGGGTTGTCGACAAGCTATATTTTTTATGTGCTCTCTGT
GGGAGGGTTATCAACTAATTCATGTGCTCTCCGTGGGATCGGTACTCTTACTTCG
>chr1B_63
--------------------------------------------------------------GTCATGGATTGGAGCCAC
AGCAGATGAAGGAAAAACATGGCCTCGAGACAAGGGAATTCCGGAAGATTCTTGCCTCAGCAACTAGGTGCACCGTTGGC
TTTACGCGACG-AAGGAGTAAGCTTCACACTGCTGGATGGATTCTTTGCTTCAGGTCCACGATCTCATCTGCTCACGTAC
GTACGTCGCTTGTATCCCTGATCGACAGTAAACATATATACTACTAGTATATAGTATATCAAATTGCCTAAGCCACGTCC
TGTACACACTGCACCGTTGGTTCATTTTAGGCCTTCTCAATGTCGTACACGTTACTTACATGTATATATGCTATATATAC
AGCCTACAACACGAGTAAATCCGGCCGTCACATGCACGCACGTAAATATGGTAATCACCCGAGCGACATGACATTCTGAC
AGAATTAATTGCGTGGTTTGCGTTGTCCTGGCTAAGATTCCTTATTGGTAATTAACGGTGACTTTGATGCCCTCGTGTCC
AATGGAAGCATCACCCTCTGCCACACTTCGCCTCCGTGAAAAATTATGTCTGCGCTGTCTAGATTAATTAAGCTA-----
---CCCTTTACCCTTTACTTTCCAGCTA--------CTAG---GTCAGAGGCAGGGCATCTCTGGAGAACCTAGCCAACA
GCGCTGTACTAATTACCCTTGTCTCTCTCGGGCGTGGAGTCTCTCTCAACAGCACACACATGCGTCGTCGTCGTCG---A
CCGATATAAATAACCGCTCGCTTCGCACACTCCGGTCGCCATCGATCTCCTTGTTGCTGAACTCGCTTCTCTAGCTCTAA
GCCTCT--AGCTGCCCAAGCTGGCAGGCCCAAGTGCTCTAGCTCCGCCTAACAGAAACTACACTAGAGATCTCCGGCCGG
CCGCCGGCGGCGCTGATACACTGCAGGCACATACAACGGTCGCGTTCATGGCCGGCGGGTCGCCGTGCGCGTCGTGCAAG
CTGCTCCGGCGGCGGTGCACCAAGGACTGCATCTTCGCCCCCTTCTTCCCAGCCGACGACCCCCACAAGTTCGCCATCGT
CCACAAGGTCTTCGGCGCCAGCAACGTCAGCAAGATGCTCCTGGTACGTATACATACTCCTACGTAGCTAGATGATATTT
CATGCAATGACGCGCGGAGACACGCAGATGCTAACATATGAGATGCCATTACTTGCAGGAGCTGCCGGTGCAGCAGCGCG
GGGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGCGCGGGTGCGAGACCCGGTGTACGGCTGCGTGGGGGCCATCTCT
TTCCTGCAGAACCAGGTGTCGCAGCTGCAGATGCAGCTCGCCGTCGCGCAGGCCGAGATCCTGTGCATCCAGATGCAGCA
GCGAGACGGCTGCCAGTCCAAGGACGACGCAGGACGAAGCGACGGCCACAGCCTGGCGGCCATGCAGCAGATGGTCGTCG
ACGACACCGCAGCAGCAGAGGCTTTCCTGATGCAGAACGGCGGCGGCGGCTTCCCGCCGCAGCTGATGAGCAGCTACGGC
GGCGCGCCGGCCTCCAACGTGCATCACTACGGGCAGCAGGACCACCTCAAGAGGGAGTCCCTGTGGACGTAGCTGGCTAG
TCAAAGTCAACTTGTGTAGAACTTAGCTTGTCGCTAGCTATGCACGTGTAGGGGTTTAGGTTAATTGCGTTATGATGACT
CGGCTTCTCTTCTTTT-ACATTTTGAA---------CTCTCTCTCTCCGCCTCTCCCTGCTGGTGTTGTTGTCTTG---T
AGGTGTTTGATCCAGAATTAGTACAAGATCCATGCTTTTGTGATCATTGTCATGTTCTTATATCTAAAAAAAAGGCTCAC
GCCCTGTTTGATAGATAAAACAACGATCA-TATAATCCAAAGCATACAATTCTGACACCGCAACACACATCCGAGGTAGG
ATACAACAATGCATAAGAACAGCTATGACATCACCCCAACCCATTCCAAGCCCGTAACGACCGCTTGAAGATGTCGGAGT
TCTCTACTGTGACAAAGGTGTCATGAAGAGACGATGCTACGCCCGACGAGCTGTGGACTCCAAGACATCACCTTCATAAA
AGAAACAACACTGGAGCACCACCATTGCCCGATTCAAAAAAGATTAAGGTTTTTGCCCTGAACA----------------
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>SNPs
----------S--S---S-----------SSSSSS----S--SSSS--S-----------S-------------------
-------------S-----S-------S----------------------------------------------------
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------S-------------------------------------------------------------------------
------------------------S----------------------S--------------------------------
------------S-------------------------------------------------------------------
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---------------------------------------------------------------------------SSSSS
SSS------------------------------------SSSS-------------------------------------
----------------------------------------------------------------------------SSS-
--------------S------------------------------S----------------------------------
------SS--S---------------------------------------------------------------------
-------------------------------------------------------------------------S------
-----------------------------------S--------------------------------------------
------------S------------------------------------S------------------------------
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---------------------------------S----------------------------------------------
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-----------S------------------SSSS----------------------------------------------
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-S----------------------S----------S--------------------------------------------
-----------S---------S-S-----S------------------------------S-------------------
--------------S---------S-----------S--S------S---------------------------------
-S----S------------S---------------------------------------------S--------------
----SS----------------------------S----S-S-S--S---S------S-------------S----S---
---------------------------S------S------------------S---------------------S--S-
-----SS---------------------S---------------S---------------S----S--------------
-----------------------------------S---SS-----------------S---------------------
------S--------S---------------S--S-----------------------------------------S---
--S---------S----------------------------S-------------
>forward_94
--------------------------------------------------------------------------AGCCAC
AGCAGATGAAGGAG------------------------------------------------------------------
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>reverse_2105
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------------------------AAAGAGACGATGATGGGCCC------------------------------------
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