>input_sequence_72399
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-----------------------------------------------------------------------ATGGTACGC
AATGTTACATTTACTTATGACCTGCCTCTCCTGGTCCTCTTCTTCTTAATCAGTTCACGCTAGC-TAATTCGTTGTGGAT
TTGTGAATAACTTGGGTGTATTTTTCA--------------TGCAGGCGAACGCGGTGTCGGGCGTGGCGGTGAGCGAGG
AGTGCGTGAGGGCGTTCCAGGAGCTGCGCGCGGGGCGCGCGCACCGGTTCGTGGTGTACAAGATGGACGACGCCGTGCAG
CAGGTGGTGGTGGACAAGGTGGGCGGCCGCGACGCCGGCTTCGACGACCTGGCCGCGGCACTCCCCGCCGACGACTGCCG
CTACGCCGTCTACGACCTCGACTTCACCGTCGGCGACGCCACCGCCAAAGGCGCGGACGGGGAGGCGCCGCGCAGCAAGA
TCTTCTTCATCTCCTGGTACGTTTCT----------CTTAAATAACACTCGTGGTCCTGTGTATCAGCATATGTGACCAA
ATGTGTGGGCTGCACGATGACATGTTGGTGTTGGTTGGTTATGTAA-AAGGTCGCCGGCGAGTGCGGAGGTGAAGAGCAA
GATGATCTACGCCAGCTCCAACGAGGGGTTCAAGAAGGAGCTGGACGGCACGCAGATCGACGTGCAGGCCACCGACCCCA
GCGAGCTCACGCTCGACATCCTCAAGGACCACGCCACCTAA---------------------------------------
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>chr5B_1_TraesCS5B01G491800
CCAATGATCGTGGCGTTTCGGCCTGGGCGGCAACGCCAATGCGCTTGGCGTTTCAATGTGGATCGGAAGCGCTAGCTAGC
TTGGCGTTTGTATGTGGGTCTGAAACGCGAGCTACTTCGGCGTTTTTATATCGAGAAGAAACGCCACGGGCTGTGGCGTT
ATTAAAAGGGTCAGATTGTGAAATACTTTCATGTCAAGTTCATTTTGTGACAAAGATTGTTGAAAAGGTCAGAATAGTGA
TTTCGTCCACCAAACTATGTACAGATCGTGATTTTTGATTTGTTTCTCCTCAGCCATGACCATCAAAGAAGTACATGCAA
TATGCAACGCAGATAAATCGATGCAAGGAACCAAACACGCTCTTAAGCCTTTTGTTTTCTCCATTCATCCCTTGGCCGTG
GCCGTGGGCTTTGCATGAATGGAGAAAATAAAAAGCATGAGAGTTACGTGCAATGGTCAAACTTGAATGGCACGGCCGGA
AATCGTTGGAACAGTCAATTTCCTATTTCACTCACCTGGATACGCAAAG-GAACCTTCCA--CCGTGATTGACAGGCGTA
CCAACCGAAATGTGCACGTCACTGCG---GAAGCACAAACCAACTGCTGAGCTGATCTTCGCGAATCGAGGTACGTAGAT
GATTTCGAATGGACAAGGCACGCCCTGACCCTCAGTCTGCCGACCGACCACGCAACCGGAACTGGCCACCATCCCCACTC
CAGATAGATGGCTTTTCAAGCTTCGATTCTTCGGCGTGAGTCACTCCAATTCTTCTTCTTCCCGCTGCCACATCGCCACG
TCCAGAACAGTCTTCCCGACGGACAGGGACACCCCAGCGCCCACACGTGT-------------TCACCTCGCTGACACTG
GACACGACGCACAAC-----CATCCTATTTAAGCGCCAGGCGAGGCCACGCTGAAATAAT-ACAAAAACCCACTACAGAA
------TACTACCAGCAGTTCTTCGTTGCAGCATCATCACACAGATTTAAGGTTCAATCTCCAGACAGAAAATGGTACGC
AATGTTACATTTACTTATGACCTGCCTCTCCTGGTCCTCTTCTTCTTAATCAGTTCACGCTAGC-TAATTCGTTGTGGAT
TTGTGAATAACTTGGGTGTATTTTTCA--------------TGCAGGCGAACGCGGTGTCGGGCGTGGCGGTGAGCGAGG
AGTGCGTGAGGGCGTTCCAGGAGCTGCGCGCGGGGCGCGCGCACCGGTTCGTGGTGTACAAGATGGACGACGCCGTGCAG
CAGGTGGTGGTGGACAAGGTGGGCGGCCGCGACGCCGGCTTCGACGACCTGGCCGCGGCACTCCCCGCCGACGACTGCCG
CTACGCCGTCTACGACCTCGACTTCACCGTCGGCGACGCCACCGCCAAAGGCGCGGACGGGGAGGCGCCGCGCAGCAAGA
TCTTCTTCATCTCCTGGTACGTTTCT----------CTTAAATAACACTCGTGGTCCTGTGTATCAGCATATGTGACCAA
ATGTGTGGGCTGCACGATGACATGTTGGTGTTGGTTGGTTATGTAA-AAGGTCGCCGGCGAGTGCGGAGGTGAAGAGCAA
GATGATCTACGCCAGCTCCAACGAGGGGTTCAAGAAGGAGCTGGACGGCACGCAGATCGACGTGCAGGCCACCGACCCCA
GCGAGCTCACGCTCGACATCCTCAAGGACCACGCCACCTAACCAATCAATCAAGCCCC--------TATGTATGATTGAC
GGTTCACGCGTGCACGTTACGTGCGT----GTGCTAGCTTTGTGCTGTGCATGTATCTTTGCCCTCTTCGATTGTGTTGT
GTGCTTCCAATTGGATCGTGTCGTCGACCCCAAGAGAATGATGATGATTT-TCCATTGTACCACTACGTGGTGTGCGAAT
AATTGACTCTTTCCTCAAGTGTAACACGTAATGGCAACGA-TTAGTTGAGGACATGTTCATGTTACAATGGGGATCTTTG
CTTCTCCTCGAAAAGGACAAATGGGATTGCCCTGGTTTTATGTCATGGCAAAAAAGAAACGATTGAATTCGATTAATCTT
CTGACATAAAACATTTGGATTTAGCATAGTCAATTTTGTGTACCTTGGGCTCATACATTCACATGTCAATGAATAGTAAC
ACGAAAAGTTAAAATCTTCTGGAAAAAAAATCTTGAGATAAAACATCCGAGTTTAGTATAGTCAACTTTATGTACCTTAT
GTCAGGGAATAGTGACATGAAAAGTAAAAATCTGACATAAAACATCTGGGTTCACTATAGTCAACTCTATATACCTTGCG
CTTGCGTTCACACATTGAGATGTTAATGAATAGTAACATGAAAAGTTAAAATCTTCATCCATTTATGCATTGAGATGTCA
GTAAATAGTAACATGAAAAGTTAAAATCTTCCTGTGGTATGTTGATGTAAAACATTAGGGTTCAGCATAGTCAACTTTAT
ATACCCTGTGCTTGCGTTCACACAGATCGGTTCGAACCTTTGCATGCCGAAACATCTGGGTTCAGCATAGTCAGCTTTAT
ATACCTTGCGCTTGCGTTCACGCATTGAGATGTTAGTGAACAGTAACATGAAACGGCTCAGCATAGTCAAACTTCATGTA
CTTTGCGCTTGCGTTCACACATTGAAATGTCAGTGAATAGTAACATGAAAAGTTAAAATCTTTGTGTGGCATCTTGACAT
AAAACATCTGGGTTC
>chr5D_434
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---------------------------------AGTATAAGAGTTACGTGTGATGGTCAA-CCTGAATGGCACGGCGGGA
ATTCGCAGCTCAATTCAATTTCT------ACTCGCCTGGATACGCAAAG-GAACCTTGGACGCCGTGATTGACAGGTGTA
CCAACCGAAATGTGCATGTCACTGCG---GAAGCACAATCCAACTGCTTAGCTGATCTTCGCGAATCGAGGC----AGAT
GATTTCAAATGGA--------------AA------ACCGCCGACCGACCACGCAACCGGAACTGGCCACCATCCCCAC--
CAGATAGATGACTTTTCCAGCTTCGATTCTTGGGCGTGAGTCACTCCAATTCTTCTTCTTCCCGCTGCCACATCGCCACA
TCCAGAACAGTCCGCCCGACGGAGAGCGACACCCCAGCGCCCACACGTGTACACCTCCCCAGTTCACCTCACTGACACTG
GACACGACACACAACACAACCATCCTATTTAAGCACCAGGCGACACCACGCTGAAATAATAACAAAAATCCACTGCAAAA
------AACCACTAGCAGTTCTTCGTTGCAGCATCATCACACAGATTTAAGGTTCAATCTCCAGATAGAAAATGGTACGC
AATGTCCATACGATCTGCTTCCGAT------TCTCCCTGTTCTTTTTACTCAGTTCGTGCTTTGTTAATTTGTAATGGAC
TCGTGAAGAACTTTGGTGGATTTTGGTT---GCGTGAACATTGCAGGCGAACGCGGTGTCGGGCGTGGCGGTGAGCGAGG
AGTGCGTGAGGGCGTTCCAGGAGATGCGCGCGGGGCGCGCGCACCGCTTCGTGGTGTACAAGATGGACGACGCCGTGCAG
CGGGTGGTGGTGGACAAGGTGGGCGGCCGCGACGCCGGCTTCGACGACCTCACCGCGGCCCTCCCCACCGCCGACTGCCG
CTACGCCGTCTATGACCTCGACTTCACCGTCGGCGACGCCACCGCCAAAGGCGCCGACGGGGAGGCGCCGCGCAGCAAGA
TTTTCTTCATCTCCTGGTACATTTCT----------CTTAAATAGCACTCGTGCTCCTGTATATGTG----TGTGACCAA
CTGTGTGGGCTGCACGATGACATGGTGGTGTTGGTTGGTTAATAATGAAGGTCGCCGGCGAGTGCGGAGGTGAAGAGCAA
GATGATCTACGCCAGCTCCAACGAGGGGTTCAAGAAGGAGCTGGACGGCACGCAGATCGACGTGCAGGCCACCGACCCCA
GCGAGCTCACGCTCGACATCCTCAAGGACCACGCCACCTAACCAATCAATCAATCCCTCCCGTGTGTATGTATGATTGAC
GGTTCACGCGTGCACGTTACGTGCGTGCGTGTGCTAGTTTTGTGCTGTGCATGTATCTTTGCCCTCTTCGATTGTGTTGT
GTGCTTCCAACTGGATCGTGTCGTCCGCACGA--AGAATGATGATGATTT-CCCTTGT----ACTACGTGGTGTGCAAAT
AATTGACTCTTTCCTCAAGTGAAACACGTAATGGCAACGAATTAGTTGAGGACATG------------------------
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>chr5A_440
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---------------------------------------AGGGTTACATGCAATGGTCAA-CTTGAATGGCACCACAGGA
ATTCGCAGATCAATTCTAGTTCT------ACTCACCTGGATACGCAAAACGAACCTTCCA--CCGTGATTGACAGGCGTA
CTAACCGAAATATGCACGTCACTGCGGATGAAGCACAATCGAACTGCTGAGCTGATCTTCGCGAATCAAGCTAGATATAA
TGCTG---ATGGAAAGGGCGCGCCCTCAA------TCTGCTGACCGACCACGCAAGCGGATCTGGCCACCATCAGTCGAG
ACGAC------CTTTCCAAGCTTCGATTCTTGGGCGTGAGTCACTCCAATTCTTCTTCTTCCCGCTGCCACATCGCCATG
TCGAGAACAGTCCGCCCGACGGAGAGCGACACCACAGCGCCCACACGTGT-------------TCACCTCGCTCACATTG
GACACGACACACAAT-----CATCTTATTTAAGCACCAGGCGACACCACGCTGAAATAACAACAAAAAACCACTGCGAAA
TACTCCTACTACTAGCAGTTCTTCGCTGCAGCATCATCACACAGATTTAAGGTTCAATCTCCAGACAGAAAATGGTACTC
-----------------------------CCTCTTCTTCTTAATCTTAATCAGTTCACGCTCAATTAGTTCGTCGTGGAT
TTGTCGATAACTTTGGTGGATTTTTGGTTGCGCGTGAACATTGCAGGCGAACGCGGTGTCGGGCGTGGCGGTGAGCGAGG
AGTGCGTGAGGGCGTTCCAGGAGCTGCGGGCGGGGCGGGCGCACCGGTTCGTGGTGTACAAGATGGACGATGCCGTGCAG
CGGGTGGTGGTGGACAAGGTGGGCGGCCGCGACGCCGGCTTCGACGACCTCGCCGCGGCGCTCCCCGCCGACGACTGCTG
CTACGCCGTCTACGACCTCGACTTCACCGTCGGCGACGCCACCGCCAAAGGCGCCGACGGGGAGGCGCCCCGCAGCAAGA
TATTCTTCATCTCCTGGTACGTACTCCTGTGCTACGCTTAAATAGGAGTACTTCAAATC-----------ATGCAACTAC
GTACGTGAGCCGCACGATGATGACATATGTG----TGATTATTGATGAAGGTCGCCGGCGAGTGCGGAGGTGAAGAGCAA
GATGATCTACGCCAGCTCCAACGAGGGGTTCGAGAAGGAGCTGGACGGCACGCAGATCGACGTGCAGGCCACCGACCCCA
GCGAGCTCACCCTCGACATCCTCAAGGACCACGCCACCTAACCAATCAAGCAATCCCTCCAGTG----TGTATGATTGAC
GGTTCACGCGTGCACGTTACGTGCGTGC------TAGTTTTGTGCTGTGCATGTATCTTTGCCCTTTTCGATTGTGTTGT
GTGCTTCCAACTGGATCGTGTCGTCGACCCCAAGAGAATGATGATGATTTTCCATTGT----ACTATGTGGTGTGCAAAT
AATTGACTCTATCCTCAAGTGAAACACGTAAT------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S---------------------S---------------S---
-S---SS-SSSS-S--------SSSSSSS---------------------------------------------------
--------------------------------------S----------------------------------SS-----
------S------S-S---S------S-SSSSSSS-------------------------------------------SS
----------S--------------------S------------------------------------------------
------------SS---------S--S-----------------------------------------------------
--------S-------------------------S--------SS-----------------------S-----S--S--
------------S-------------------------------------------------------------------
-----SSSSSSS-SS-SSSS--SSSSSSS---SS---------------------------SSS---------S------
-------------S----S------SS-----------------------------------------------------
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-S------------------------------------------------S--------S--------------------
------------------------------------------------------S-------------------------
-S------------------------------------------S--------S------S---SS-SSS----------
S-----------------------S-----------------SS-S----------------------------------
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-----------------------------------------------------S---S----------------------
-------------------------------------S------------------------------------------
----------S----------------------------------------S--S-SSSSSS--------------S---
---------------------S----------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_360
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--------------------ATGCAAGGAACCAAACACGC----------------------------------------
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>reverse_2319
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------------------------------------------------------------------------------CG
CTTGCGTTCACACATTGA--------------------------------------------------------------
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