>input_sequence_72387
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-------ATGGCCACTCCTACTCCA------TACCACCTCCTGTCTCCAAGAGCCATCGTCACCAAGATCATCAGCATGA
AGCGGCAG------GAGCCGGA------------GC---CGCCGCCGCCCAAGATCATCCTGCAGCCGCGGCACCGGACC
AGCCCCGCGATGTGGTGCGCTGCCATCGTCTGCTTCGCCTTCAGCGTCCTCCTCATCCTCGCCGGCCTGGTGATCCTCAC
CGTCTACCTGGCGGTGAAGCCGAGGACGCTGTCCTTCGACGTCGCCAATGCCGCCCTCCACAGCATCTATGTCGGCTCGC
CTCCTCCCTACTTCAACGGCGACATGACGCTGACGGCCAACATCTCCAACCCCAACCACAAGATCGGCGTCGTGATCCAG
TCCGGCGCCATCGAGCTCTTCTTCCGGGGCAGGCTGGTGGCAGCGCAGGCGCTGCCGCCGTTCGCGCAGCGT--------
GTTCACAGTTCTCAACGTCCACATGCTGTCTAGCCAGGTGG------------------CCTTGGAGATGCTGAACCAGA
TGAAGAGCAACAAGATCCTCTACACCATCAGAGGGACCTTCAAGGTCCGGGAAAGGTTATGGTCTTGGCACTACACCTAC
CGGATGACTGCCATTTGTGACCTGGAGCTCACCGCGCCTCCCTCTGGATTTCTCGTAGATAGGAGATGCACAACATCAAC
GTGA----------------------------------------------------------------------------
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-------------------------------
>chr1A_1_TraesCS1A01G230900
CCTTTCCGTTTTGGAAACAAGGAGCAGGTGGAAGCGTGCTTCGCGCTTTCGAGCCTTCGAGGTTAAGCAACTTGTGCGGG
CTTCTCTTCCCAGCTCTGCTCCCGCTCCCG------GCCGTCCGGAGTAGTAA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CAATTTTCAATTTTTCACATACACGAAAATTAAGCTTGAGCTTTGTGCACAAGATTGCAGAAA
TC-GTATTGATGGTGACGCATCATAACAGTAGTTGCCTCTTACCGGACGTGGTGTTTCTTGGGTGAACAGTAATAAAATC
C-AAAAAAATATCTGATTTTATTTGGTGCAAACATTGACAAAAGTTCTCGGTGCTCATAAAATTTCATCACGAAATAACA
TTTGTGAAAGCTGTAGAAAAAAACCATAATTGATGCTCCAAAAGTGTTGTTTTCGAAAATATTTTGGAGTGCTGATTTTG
TTTTTTTTTTTACCACCACTTCTACGAATGTCATTTCGTGATGAAATTTTGCAAGCGCTGAGAACTTTTTTCAATGTTTG
CACTT--AAAAAAATTCAGAATTTTTGGAATTTTTTTCTATTTTC----TTTTAATTTTACTGTTCATCA----------
-----------------TTTTGCCTCTTACCACAT----ACAGTATGCCTCAAGATGGTGTTTTTTGCTTAACCGAGTGG
AAGGAAGAGTAGAGCACATTCCAGAAAACATC--AAAGGAGGCCAATAACCGAGACTGA-CTTTATTTCGCACAGCTCGA
AATACGCTTTTCTGTGTTA-TATAAAGCAGGCCCCAATCACATT-------------------G----------------
--CCTTTGCTCCAAATTTTCAAGGGCGGAAAAGGAG-------------CCAAGAC------AATGGCAGGCCGGGCTCG
CATCCACTATTCTC----CAAAAG----CTTCTTCTTTTTCCCTTCCCTCTGTATTTTGCATCAGCGT------------
AGCCTACTTTTACCTCCATTATTACTTCGTCCT----TCCCTTTTGCTTTCCCGTTTGGA--CACCA--CTCGCTCGGCT
TCTTCTCTTCTCCTCTCCCCTCCTCCCGGTGCGTT--------------CGTTTGTGATTG------GT----------C
GGAATCAATGGCCACTCCTACTCCA------TACCACCTCCTGTCTCCAAGAGCCATCGTCACCAAGATCATCAGCATGA
AGCGGCAG------GAGCCGGA------------GC---CGCCGCCGCCCAAGATCATCCTGCAGCCGCGGCACCGGACC
AGCCCCGCGATGTGGTGCGCTGCCATCGTCTGCTTCGCCTTCAGCGTCCTCCTCATCCTCGCCGGCCTGGTGATCCTCAC
CGTCTACCTGGCGGTGAAGCCGAGGACGCTGTCCTTCGACGTCGCCAATGCCGCCCTCCACAGCATCTATGTCGGCTCGC
CTCCTCCCTACTTCAACGGCGACATGACGCTGACGGCCAACATCTCCAACCCCAACCACAAGATCGGCGTCGTGATCCAG
TCCGGCGCCATCGAGCTCTTCTTCCGGGGCAGGCTGGTGGCAGCGCAGGCGCTGCCGCCGTTCGCGCAGCGT--------
GTTCACAGTTCTCAACGTCCACATGCTGTCTAGCCAGGTGG------------------CCTTGGAGATGCTGAACCAGA
TGAAGAGCAACAAGATCCTCTACACCATCAGAGGGACCTTCAAGGTCCGGGAAAGGTTATGGTCTTGGCACTACACCTAC
CGGATGACTGCCATTTGTGACCTGGAGCTCACCGCGCCTCCCTCTGGATTTCTCGTAGATAGGAGATGCACAACATCAAC
GTGATTGGTATCTGG-----------ATGCTCTTTTGATCT---TTTTTTCTTGTATATCAAATTTCAGAGGATGTATAG
CAGTACG-AACTATTTTGGATGTATTTTTTTTATGTAAAGTAAAACCCAAGTAAAGCATTCACAGCAATCTAAAA-TTAT
CACACGATTTCCTCTGTTTATGTCTGAAAACCAAACAAACAA----GGGCCTGGAAACATCTACTGGT-ACCATATTTAG
GTAGGTTATAATAGCTGAAGAAGAAAATCATTGGACACATTTATCTGTAAT-----------------------------
-----------------------------AACAGTTAGGGTAACAAAAACAATCTGTGAAAGCGATGCTGCCCCCTGGTT
TCTAAAACCAATTTCCATCACAACTACTTTTCTCATGACTATACTAGAAACAGAAACAAAACAAATACTCTGCAAAACTC
AAGATTGAATGCGTTCCCTTAGTAATTCATTGTACCAGAAATGTAATTATT---CATAAGGACCCCTCCAAGATCATATT
TATTA--------TAGTCCTTGTCTAAGCACAACTCATTCCAGCTCTCTGTCTTAGCAGACGAGAAGAATATACTACTCT
CAT-----------AAGATATTGAATCTCAACAAACAATCTCAAGCTTAAGCTACA------------------------
--------------------------------------------------------------------------------
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--ATACCCTGCACCCTGTAGTGCTTCCAAGTGCCAGACCAAATAGTAGTTAGCACACTATTCATACATAGGATAGAAGAA
ACACCTTCGGCCTTCCAGCCTGCCTGATTCATGGCATCCTGAGTGATTTTGCTATTCCAGTTAATTTTTCATCTTTCTGT
TAGAACTTTGGTATCATCAGTTTTTTTTAAGGAAGCTCTTTGGTATCAGCATGTTTGTTCCCACAGTATATGTATTGGCT
GTGATTTTGCTATTCGGTTTT-CTTTCATCGTTCTGTCAGAGAATTTGTATCAGCTGGTTTGTTCCAAGTA---------
----------TGTGCTGGCTGTACTTTCATGGTCTGTAATTCTGTATGCATCGTGGATGGGGAGCTAGCGCTTCTTTTGT
GGGTGTATCAGGCTTGATATGCTTGCAAAGA
>chr1D_10
---------TTTGGAAACAAGGCGCAGGTGGAAGCATGCTTTGCGCTTTCGAGCCTTCGAGGTTAAGCAACTTGTGCGGG
CTTCTCTTCCCAGCTCTTCTCCCGCTCCCGTTCCCGGCCAGCCGGAGTAGTAA---------------------------
--------------------------------------------------------------------------------
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-----------------ACATTTTCAGTTTCTCACATACACGAAAATTAAGCTTGAGCTTTATGCACAAGATTGCAGAAA
TCAGTATTGATGGCGACTCGTCATAACAGTAGTTGCCTCTTACCGGACGTGGTATTTCTCGGGCGAATAGTAAAAGTCCA
AAAAAAAAAATTCTGACTTTTTTT-GTGCAAACATTGACAAAAGTACTCGGTGCTCACAAAATTTCATCACGAGATAACA
TTTGTGGAAGTCGTAGCAAAAAACG-AAATTGATGCTTCAAAAATGTTATTTTTGAAAACATTTTGGAGTGCTGATTTTG
TTTTTTT----ACCACGACTTCTACGAATGTCATGTCACGATGAAATTTTGCAAGCACCTAGAACTTTTGTCGATGTTTG
CACC---AAAAAAATTCGGAACTTTTTGAAACGTTTTCCTTTTTTCTTTTTTGAATTTTACTGTCCATCCT---------
-----------------TTTTGCCTCTTACCACATGCATACAGTATGCCTAAAGATGGAGTTTTTTGCTTAACCGAGTGG
AAGGAAGAGTAGAGCACATTCCAGAGAACATC--AAAGGAGGCCAATAACCGAGACTGA-CTTTATTTGGCACTGCCCGA
AATACGCTTTTCTGTGGTA-TACAAAGCAGGCCCCAATCATATT-------------------G----------------
--CCTTTACTCCAATA----------------------------------------------------------------
--------------------------------------------------------TTGCATTAGCAT------------
AGCCAACTTTTACCTCCATTATTACTTCGCCGT----TCCCTTTTGCTTTCCCGTTTGGA--CACCATAGTCGCCTGGCT
TCTTCTCTTCTCTTCTCCTCTCCTCCCGGTGCGCT--------------CGTTTGTGATTG------GTTGCTGTTAGTC
GGAATCAATGGTTACTCCCACTCCA------TACCATCTCCTGTCTCCAAGAACCATCGTCACCAAGATCATCAGCATGA
AGCAGCAG------GAGCCGGA------------GC---------CGCCCAAGATCATCCTGCAGCCCCGGCACCGGACC
AGCCCGGCGATGTGGTGCGCCGCCATCGTCTGCTTCGCCTTCAGCGTCCTCCTCATCCTCGTCGGCCTGGTGATCCTCAT
CGTCTTCCTGACGGTGAAGCCAAGGACGCCGTCCTTCGACGTCGCCCACGCCGCCCTCAACAGCGTCTACATCGGCTCGC
CCCCGCCCTACTTCAACGGCGACATGACGCTGACGGCCAACATCTCCAACCCCAACCACAAGATCGGCGTCGTGATCCAC
TCTGGGGCCATCGAGCTCTTCTTCCGGGGCAGGCTGGTGTCGGCGCAGGCGCTGCCGTCGTTTGCGCAGCGGCGGGGGCA
GTTCACAGTCCTCAACGTCCACATGCTGTCCAGTCAGGTGGTGCTACCGCCGGAGGTGGCCGTGGAGCTGCTGAACCAGA
TGAAGAGCAACAAGATCCTCTACACCATCAGAGGGACCTTCAAGGTCCGGGAAAGGTTCTGGTCTTGGCACTACACCTAC
CGGATGACTGCCATTTGTGACCTGGAGCTCACCGCGCCTCCCTCTGGATTTCTCGTAGATAGGAGATGCACAACATCAAC
TTGATTGGTATCTGG-----------ATGCTCTTTTGATCT---TTTTTTCTTGT--ATCAAACTTTAGA-GATGTATAG
CAGTACGAAACTATTTTGGATGTATTTTTTT-ATGTGAAGTAAAACCCAAGTAAACCATTCACAGCAATCTAAAAATTAT
CACACGA-TTCCTCTGTTTATGTCTGAAAATCAAACAAACAA----GGGCCTGGAAACATCTACTGGTTACCAAATTTAG
GTAGCTT--AATAACTGAAGAAGAAAATCATTGGACACATTTATCTGTACCTCCATTCCCTTATACAACCTGTAGCAAAA
TGACATTAAGAAAAAAGACCAATTTCTGGAACAGTTAGGGTAGCAAAAACAACCTGTGAAAGCGATGCCTGCCCCTGGTT
TCTGAAACCAATTTCTATCACAACTCCTTTTCTCATGACTACACTAGAAACAGGAACAAAACAAATACTCTGCAAAACAT
AAGATTGAATGCACTCCCTTAGCAATTCATTGTACCAGAAATGTAGTTATT---CAGAAGGACCCCTCCAAGATCACATT
TATTATAGTCCATTAGTCCTTGTCTAAGCACAACTCATTCCAGCTCT--GTCTTAGCAGACGAGAAGATTATACT---CT
CATAAAAACATGAGAAGTTATTGAACCTCAATAAACAATCTCAAGCTTAAGCTACTATTGTTGGTTTGATCTGACGGCTC
AACAGGCCATTAGATCTGATAGCCTAACAGGAAAAAAAAAGGGACAAAGATTAACATTAAGAAAAAAGACCCAAGCACCA
ACGTGCATATGCCTCGATCTAACTAACGGGCCCTGATCGGGGGCGCCCAAAACCAACTCAGGTTTGGGTCCCTGTCGCCA
GCGCTACATATAAGGGAAGGGGAGCTTCGGCCTCGTGCGCATGACAAGTTCGCGTACGATCTCTAGCTCCCCAAAATTCC
ATCACCCTAATCCGATCTGGGGGAATGCTGTAGCGTCAGGAAGACCTAACCCAGCTGCCGCTGCCCTCTCCGGGCAGTGC
CGGTGGCGTCCTGAGGGGATCAGGCAGTGCCGGTGGCGTCCTGAGGGGATCAGGACGTCCAGGAGATAGACTACGACCTC
TACATCGTCCATCAATCTCGCCTGCAACGAGCAGGCGATCATGTCGACTTCTGTGACATGTAAAGGATCTCTAAACCCCT
CTCTGTTCATGTTATATTGGGTGATCTAGATGCAATCAAATTATGTGTATGACATCCTAGTGATGCATTAGTTCCAACAA
ATATACCTTGCACCCTGTAGTGCTTCCAAGTGCCAGACCAAA---TAGTTAGCACACTATTCATACGTAGGATCGAAGAA
ACAGCTTCGACCTTCCAGCCTGCTTGATTCATGGCATCCTGAGTGATTTTGCTATTCCAGTTGATTTTTCATCTTTCTGT
TAGCACTTTGGTATCAGCAGTTTTTTTAA---TAACTCTTTGGTATCAGCATGTTGGTTCCCACAGTATATGTATTGGCT
GTGATTTTGCTATTCGGTTTTTCTTTCATCGTTCTGTCAGAGAATTTGTATCAGCTGGTTTGTTCCAAGTA---------
----------TGTGTTGGCCGTACTTTTATGGTTTGTAATTCTGTACGCATCGTGGATGGGGAGCTAGCACTTCTTTTGT
GGGTGCATCA-GCTTGATACGCTTGCAAAGA
>chr1B_54
-----------------------------------------------------CCTTCGAGGTTAAGCAACTTGTGCGGG
CTTCTCTTCCCAGATCTGCTCCCGCTCACG------GCCGGCCGGGGTAGTAAACATTTTCAGTTTCTTTTTTTTTTTGA
AACAAGGCAAAAGGTTTGCCACTTTCATACATTAAGCAGAAGAGAGTTGCTCGATTAATTAACGGAAACCTGGACGAAAA
CCGTTACAACACATGCCCTCAACAGGGCACCATCAACACACGCCGACCCCAGGGCCGCGCTCCAGCCGAGCCGCCGGCTC
CGTCACCCAAGCAACCCGTAGCCGACACCCTACAACCAAGACCGAAACCGCCGCTCCGGCGTCCACGCCGATCCCGAGGC
CGCGCACCAGGCCGCGCACATTTTCAGTTTCTCACATACACGAAAATTAAACTTGAACTTTATGCACAAGATTGCAGAAA
TCAGTATTGATGGTGACGCGTCATAACAGTAGTTGCCTCTTACCGGACGTGGTGTTTCTCGGGTGAACAGTAAAA-----
----------------------TT-GTACAAACATTGACAAAAATTCTCAGTGCTCACAAAATTTCATCACGAAATAACA
TTCATGGAGATCATAG-AAAAAAACAAAATTGACGCTCCAAAAGTGTTATTTTTGAAAACATTTTGAAGTGCTGATTTTG
CTTTTTT----ACCACGACTTCTATAAATGTCATTTCTTGATGAAATTTTGCAAGCACCGAGAACTTTTGTCAATGTTTG
CACACAAAAAGAAAATCAGAATTTTTTAAAACGTTTTG---------TTTTTGAATTTTACTGTTCGGCTCAGATGAGCT
CGCGGGCAGAAGATGACTTTTGCCTCTTACCACAG----ACAGTATGCCTCAAGATGGAGTTTTTTGCTTAACCGAGTGG
AAGGAAGAGTAGAGCA-ATTCCAGAAAACATC--AAAGGAGGCCAATAACCGAGACTGA-CTTTATTTCGCACAGCTCGA
AATATGCTTTGCTGTGGTAGTATAAAGCAGGCCCCAGTCACATT-------------------G----------------
--CCTTCGCTCCCACTTTTCAACGGCGAAAATGGAG-------------CCGAGAGGCAATGAATGGCAGGCCAGGCCCG
CATCCACTGTTTTT----CCAAAAGCTTCTTCTTCTTTTTCCCTTCCCTCTGTATTTTGCATTAGCAT------------
AGCCTACTTTTACCTCCATTATTACTTCGTCCT----TCCCTTTTGCTTTCCCGTTCGGA--CACCTTACTCGCTTGGCT
TCTTCTCCTCTCCTCTCCTCTCCTCCCGGTGCGCT--------------CCTTTGTGATTG------GTTGCTGCTGCTC
GGGATCAATGGGTACTCCTACTCCA------TACCACCTCCTGTCTCCAAGAACCATCGTCACCAAGATCATCAGCATGA
AGCGGCAG------GAGCCAGA------------GCCGCCGCCGCCGCCCAAGATCATCCTGCAGCCACGGCACCGGACC
AGCCCCGCGATGTGGTGCGCTGCCATCGTCTGCTTCGCCTTCAGCGTCCTCCTCATCCTCGCCGGCCTGGTGATCCTCGT
CGTCTTCCTGACGGTGAAGCCAAGGACGCCGTCCTTCGACGTCGCCCACGCAGCCCTCAACAGCGTCTACATCGGCTCGC
CCCCGCCCTACTTCAACGGCGACATGACGCTGACGGCCAACATCTCCAACCCCAACCGCAAGATCGGCGTCGTGATCCAG
TCCGGCGCCGTCGAGCTCTTCTTTCGGGGCAGGCTGGTGTCGGCCCAGGCGCTGCCGTCGTTTGCGCAGCGGCGGGGGCA
GTTCACAGTCCTCAGCGTCCACATGCTGTCTAGCCAGGTCGTGCTACCGCCGGAGGTGGCCGTGGAGCTGCTGAACCAGA
TGAAGAGCAACAAGATCCTCTTCACCATCAGAGGGACCTTCAAGGTCCGGGAAAGGTTCTGGTCTTGGCACTACACCTAC
CGGATGACTGCCATTTGTGACCTGGAGCTCACCGCGCCTCCCTCTGGATTTCTCGTAGATAGGAGATGCACAACATCAAC
GTGATTGGAATCTGG-----------ATGCTCTTTTCATCT---TCTTTTGTTGC--ATCAAATTTTCAAGGATGTATAG
CAGTACGAAACTATTTTGGATGTATTTTTTTTATGTAAAGTAAAACCCAAGTAAACCATTCACAGCAATCTAAAA-TTAT
CGCGCGA-TTCCTCTGTTTATGTCTGAAAACCAAACAAACAAACAAGGGCCTGGGAACATCTACTGGTTACCATATTTAG
GTAGGTT--AATAACTGAAGAAGAAAATCATTGGACACATTTATCTGTAAT-----------------------------
-----------------------------AACAGTTAGGGTAGCAAAAACAACCTGTGAAAGCGATGCCTGCCCCTGGTT
TCTGAAACCAATTTCCATCACAACTCCTTTTCTTGTGACTATACTAGAAACAGAAACAAAACAAATACTCTGCAAAACTC
AAGATTGAATGCATTCCCTTAGCAATTCATTGTACCAGAAATGTAGTTATTATTCATAAGGACCCCTCCAAGATCACATT
TATTG--------TAGTCCTTGTCTAAGCACAACTCATTCCAGCTCTCTGTCTTAGCAGACGAGAAGAATATACTACTCT
CATAAGAAAATG-GAAGTTATTGAGCCTCAACAAACAATCTCAAGCTTAAGCTACA------------------------
--------------------------------------------------------------------------------
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--ATACCTTGCACCCTGTAGTGACCAAATAG-----------TAGTAGTTAGCACACTATTTATACATAGGATCGAAGAA
ACAGCTTCGACCTTCCAGCCTGCCTGATTCATGGCATCCTGAGTGATTTTGCTATTTCAGTTAATTTTTCATCTTTCTGT
TAGCACTTTGATATCAGCAGCAACTCTTC---------------ATCAGCAGGTTTGTTCTCACAGTATATGTACTGGGT
GTGATTTTGCCATTCGGTTTTTCTTTCATCATTCTGTCAGCGAATTTGTATCAGCTGGTTTGTTCCAAGTA---------
----------TGTGTTGGCTGTACTTTTATGGTCTGTAATTCTGTATGCATCGTGGATGGGGGGCTAGCACTTGATTTGT
GGATGTATCA-GCTTGATATGCTTGCAAAGA
>chr2B_614
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--------------------------------------------------------------TTTTGCTTAACTTAGTGG
GGGGG-----AGAGCGCATTCCAGAAGACATGAAAAAGGAGGCCAATAACCGAGCGAGAGCTTTATCTCGCACAGCTCGA
AATATGCTTTTCT----------AAAGCAGGCCCCAATCAATTGC-----------------CG----------------
--CCTTTACCCCGAATTTTCAACGGTGGGAATGGGAACGGGAATGGAGTCCGAGGC------AATGGCAGCCCGGGCCAG
CATCCACTCACTGCTTTGCAAAAG----CTGCTTCTTTATCCCTCCCCTCTTTATTTTGCTTTTGCATTAGATTAGAAGT
AGCCTCCTTTTACCTCCATTACTTCCTTCGTTTGCTCCCCCTTTTGCTTTCCGTTTGGACACCACCATACTCTCTTGGCT
TCTTCTCTTCTCCTCTCCTTCTGTTGTTGTT------------------------------GTTGCTGCTGCTGCTGCTC
GGGAGCAATGGGTACTCCTAGTCCTACCCCCTACCACCTCCAGTCTCCAAGGACCATCGTCACCAAGATCATCAGCATGA
AGCAGCAGCAGGAGGAGCCGGCGACGCCGGAT------CCGCCGCCGTCCAAGATCATACTGCAGCCGCGGCACCGGACC
ACCCCGGCGATGTGGTGCGGCGCCATCGCCGGCTTCGCCTTCAGCGTCCTCCTCATCCTCGCCGGCCTCGTCATCCTCAT
AGTCTACCTCTCTGTGAAGCCGAGGACGCCGTCCTTCGACATCGCCAACGCCGTCCTCAACACCGTCTACGTCGGCTCGC
CGTCGGCCTACTTCAACGGCGACATGACGCTGGTGGCCAACATCTCCAACCCCAACCACAAGATGGGCGTCGTCATCCAG
TCCGGCGCCGTCGAGCTCTTCTTCCGGGGCAGGCTCGTGTCGGTGCAGGCGCTGCCGCCCTTCGCGCAGCCGCGGGGCCA
CTTCACGGTGCTCAACGTCCACATGCTGTCCAGCCAGGTGGCGCTGCCGCCGGAGGTGGCCGCGGACCTGCTCAACCAGA
TGAGGAGCAACAAGATCCTCTACACCATCAGAGGGACCTTCAAGGTCCGGGAAAGGTTCTGGTCTTGGCACTACACCTAC
CGGTTGACCGCCATTTGTGACCTCGAGCTCACCTCGCCTCCCTCTGGAGTTCTTCTTGATAGGAGATGCACAACATCAAA
GTGATTAGTAATTGGTCTCTGGATCCATGCTCTTTTGATCTCATTTGTTTCTTGT--ATCAAATTGTAGA-GGA------
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-------------------------------
>chr2D_615
--------------------------------------------------------------------------------
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---------------------------------------------------------------TTTGCTTAACTTGGTAG
GAGGA-----AGAGCACATTCCAGAAGACATGAAAAAGGAGGCCAATAACCGAGCGAGAGCTTTATCTCGCACAGCTCGA
AATATGCTTTTCT----------AAAGCAGGCCCCAATCAATTGCCGGCACCCACACCACTTCG----------------
--CCTTTACCCCGAATTTTCAACGGTGGAAATGGGAATGGGAATGGAGTCCGAGGC------AATGGCAGCC-GGGCCAG
CATCCACTCACTGCTTTGCAAAAG----CTGCTTCTTTATCCCTTCCCTCTTTATTTTGCTTTTGCATTAGCTTAT---T
AGCTCCCTTTTACCTCCATTACTTCGTTCCTTTGG-CTCCCTTTTGCTTTCCCGTTTGGA--CACCATACTCTCTTGGCT
TCTTCTCCTCTCCTCTAGTCTCT-----GTGGTTTCGTTGGTGATTGGTCGTTGGTGATTGGTTGTTGCTGCTGCTGCTC
GGGATCAATGGGTACTCCTAGTCCTACCCCGTACCACCTCCAGTCTCCACGGACCATCATCACCAAGATCATCAGCATGA
AGCAGCAG------GAGCCGGCGACGCCCGATCCAC---CGCCTCCGTCCAAGATCATCCTGCAGCCGCGGCGCCGGACC
ACCCCGGCTATGTGGTGCGCCGCCATCGCGGGCTTCGCCTTCAGCGTCCTCCTCATCCTCGCCGGCCTCGTCATCCTCAT
CGTCTACCTCTCGGTGAAGCCGAGGACGCCGTCCTTTGACGTCGCCAACGCCGCCCTCAACACCGTCTACGTCGGCTCCC
CCTCCTCCTACTACAACGGCGACATGACGCTGGTGGCCAACATCTCCAACCCCAACCACAAGATGGGCGTCGTCATCCAG
TCCGGCGCTGTCGAGCTCTTCTTCCGGGGCAGGCTCGTGTCGGTGCAGGCGCTGCCGCCCTTCGCGCAGCCGCGGGGGCA
CTTCACGGTGCTCAACGTCCACATGCTGTCCAGCCAGGTGGCGCTGCCGCCGGAGGTGGCCGCCGACCTGCTCAGCCAGA
TGAGGAGCAACAAGATCCTCTACACCATCAGAGGGACCTTCAAGGTCCGGGAAAGGTTCTGGTCATGGCACTACACCTAC
CGGTTGACCGCCATTTGTGACCTCGAGCTCACCTCGCCACCCTCTGGAGTTCTTCTTGATAGGAGATGCACAACATCAAA
GTGATTAGTAATTGGTTTCTGGATCGATGCTCTTTTGATCTTCTTTGTTTCTTGT--ATCAAATTGTAGA-GGA------
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-------------------------------
>chr2A_642
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----------AGAGCACATTCCAGAAGACATGAAAAAGGAGGCCAATAACCGAGCGTGAGCTTTATCTCGCACAGCTCGA
AATATGCTTTTCT----------AAAGCAGGCCCCAATCAGTTGC-----------------CGGCACCCACACCACGTC
GCCTTTACCCCCGAAGTTTCAACGGTGGAAATGGGAATGGGAACGGAGTT-GAGGC------AATGGCAGCCCGGGCCAG
CATCCACTCACTGCTTTGCAAAAG----CTGCCTCTTTATCCCTTCCATCTTTATTTTGCTTTTGCATTAGCTTAT---T
AGCCTCCTTTTACCTCCGTTACTTCGTTCCCTTGGCCTCCCTTTTGCTTTCCCGTTTGGA--CACCATACTTGCTTGGCT
TCTTCTCCTCTCCTCTCATCTCT-----GTGGTTT--------------CGTTGGTGATTGGTTGTTGCTGCTGCTGCTC
GGGATCAATGGGTACTCCTAGTCCTACCCCGTACCACCTCCAGTCTCCAAGGACCATCGTCACCAAGATCATCAGCATGA
AGCAGCAGCAGCAGGAGCCGGCGACGCCGGATCCGC---CGCCGCCGTCCAAGATCATTCTGCAGCCGAGGCGCCGGACC
ACCCCGGCGATGTGGTGCGCCGCCATCGCTGGTTTCGCCTTCAGCGTCCTCCTCATCCTCGCCGGCCTCGTCATCCTCAT
CGTCTATCTCTCGGTGAAGCCGAGGACGCCGTCCTTCGACATCGCCAACGCCGTCCTCAACACCGTCTACGTCGGCTCGC
CGTCGTCCTACTTCAACGGCGACATGACGCTGGTGGCCAACATCTCCAACCCCAACCAAAAGATGGGCGTCGTCATCCAG
TCCGGCACCGTCGAGCTCTTCTTCCGGGGCAGGCTGGTGTCGGTGCAGGCGCTGCCTCCGTTCGCGCAGCCGCGGGGCCA
CTTCACCGTCCTCAACGTCCACATGCTGTCCAGCCAGGTGGTGCTGCCGCCGGAGGTGGCTGCGGACCTGCTCAACCAGA
TGAGGAGCAACAAGATCCTCTACACCATCAGAGGGACCTTCAAGGTCCGGGAAAGGTTCTGGTCATGGCACTACACCTAC
CGGTTGACCGCCATTTGTGACCTCGAGCTCACCTCGCCACCCTCTGGAGTTCTTCTTGATAGGAGATGCACAACATCAAA
GTGATTAT---TTGGTTTCTGGATCGATGCTCTTT----CTTTTTTTCTTCTTGT--ATCAAATTTTAGA-GGA------
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-------------------------------
>chr7D_2016
--------------------------------------------------------------------------------
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----------------------------------ATGACTGTACTAGAAACAGAAACAAAACAAATAC------------
--------------TCCCTTAGCAATTCATTGTACCAGAAATGTTAG--TTATTCAGAAGGACCCCTCCAAGATCACATT
TATTA--------TAGTCCTTGTCTAAGCACAACTCATTCCAGCTCTCTGTCTTCGCAGACGAGAAGAATATACT---CT
CATAAGAAAATGAGAAGTTATTGAACCTCAACAAACAATCTTAAGCTTAAGCTACTAA----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----ACCCTACACCCTGTAGTGCTTCTAAGTGCCAGTCCAAA--------------------------------------
-----------------------------------------------TTTGCTATTCCAGTTAAAATTTCATCTTTCTGT
TAGCACTTTGGTATCAGCAGTTAA---AA---AAACTCTTCGGTATCAGCATGTTTGTTCCCACAGTATATGTATTGGCT
GTGATTTTGCTATTCGGTTTTTCTTTCATCATTCTGTCAGCGAATTTGTATCAGCTGGTGTGTTCCAAGTACTCCATTTG
TATTGGAGTATGTGTTGGCTATAC-TTTATGGTCTGCAATTCTGTATGCATCGTGGATGGGGAGCTAGCACTTCATTTGT
GGGTCTATCA-GCTTGATATGCTTGAGAAGA
>SNPs
SSSSSSSSS-------------S------------S-----S--------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------SS-------S---S------------------------------S------------------
-------------------S---------------------------------------S-------------S-SSSSS
S--------SS-----S---S---S--------------------------------S----------------------
------S---SS----S---------S---------------------S----S-----S--------------------
-------SSSS-----S--------------------S------------------S-S----------S----------
---SS---------------------S---SSS-----SS----S-------S----------------S----------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
----------------------S--------S-------------------S-------------------------S--
--------S--S--------------------------------------------------S---S-------------
---------------------------------------------------------------------------S----
------------------S-------------------------------------------------------------
-----------SS---------------------------------------S---------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
----------S------------------S------------------S---------S-----S----S----------
-S--S---------------------------------------------------------------------------
---------------------------------------S-S-----------------------------S--------
---------S---------------------------------------------------S-----S------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
-------------------------------------------------------SS---------S-------------
-------------------------------------------------------S------------------------
-------S------------------------------------------------------------------------
-------SS----S------------------------------------------------------------------
------------------------------------------S---------S---------------SSS---------
---S---------------------S------------------------------------------------------
------------S---------S-----------------------------------------------------S---
--------------------------------------------------------------------------------
-----------------S-------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
---S-----S----------------------------------------------------------------------
---S------------S------------SSS--S---------------------------------------------
--------------------------------------------------------------------------------
--------------S------------S-----------------------------------------S----------
----------S--------------------
>forward_540
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--------------------------------------------------------------------------------
----------------------------------------TACCGGACGTGGTGTTTCTT--------------------
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-------------------------------
>reverse_1765
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----TCCCTACTTCAACGGCGACA--------------------------------------------------------
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-------------------------------
>forward_1493
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CCACCTCCTGTCTCCAAGAG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>reverse_2550
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GCCCCCTGGTT
TCTAAAACC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
