>input_sequence_72382
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-----------------------------------------------------------------ATGAGGCTCTTCTGC
TTGCTCGCGCTGCTGTTGCTACGGATGGCAACCATGCGAGCATCCGCTGGCGTGCAAGGAAGCCAAGCCGGGAACAGGAG
TACTCTTGCCTCCCAGGCCGGATGCCAGAAAAGTTGTGGCAACCTAAGTTTCGATTACCCGTTCGGCATAGGGCCGGGCT
GCTTCCGGCCGCCACAGCGAGACTTTGAGGTCATCTGCAACAA---CACCCACAGTGCC------TCCCCCAGGCTCTTC
CTGCACGACGGAATCACCGAGC-CGTCGGTGATATCATCACTGGCGATGGCGATGGCAGACCAGGTATTGATGTATCGTT
TTCCCAATCCGTCTCGGTGAGACCTGAGGTCGATGCATACAATATGTCCTGGAATCCTGGGAGATCACCCACTAGCTATT
CTTTATACTTAAACTTCACTGGTTGCTACTTCGACATGTATGTGCTCGAGCACAACACCAACAATACCGTGGGTCAGTGC
AGGACTACATGCGTTGATGAAGATATCACAGATACAGTGGCCAGGCAAAAATGCAATGGTAAAGGATGTTGCACCGCTTA
CGATATCTCTGGGTTTGGTGCCGGCTTCGATATGGTATGTGTCCGCAACAAGATTAGGAAGCCGAAGTTCAAAGCGCACA
GTAACCGAAGCTCCATATGA------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G046100
TAGTCATATTAGAGGCACAATTCTCACTCTATGTGTAGTACTAGTAGTCTAGTCGAGTACATGAGCAAGTAGGCACACTA
ATATTCATACATAGAGAGAGGTAGATAATATTCACTCTAACGTGGTTCATATGCTTCGCGGCCAGCCTCTCCACCTCTTC
CTTAAAATCTTCGCGGACAACACCACTACTCAATCAAATTTCCTAGAGTCTTGTCAGTGCTGACAGCCCAATTTCCATGA
GATTTTTGTGAGGGCTTGGAGAATGCATTCAACTTTTCGCAACAACCAACTTGTAACAGCTCGAGATTAGGCATCACATC
TTCCTCAAAATGGACCCGTGTGAGCGTAGAGCCTCAATATTTGGTAGAACCCCAAGGGCTTATATGGCATCGTCTGACCT
CAATTCACTCCCCTGTAGCATTAACTTGGAGAGATTCTGAAGCTCATGGATCCATTTTATTGCATTGACTAGAGGACCAA
GCAGAGTGAGGCACTCGAGGCTGCCTGGTGGTAACAAATCCTCACCCAAATAACCATCTAACTGATGTCCGTGCACTGCT
CTAAACAAAGATTGAAGTTGATTGTGACGAGTTGGGACCACGCCGCATCAATCTATTCGTCCTGGCACTAATGCATCGGT
CAAGAGCTATTTGGCAGCTGGAAGATGTTACCAGTTGATGTAAGGGTTTCGGTCTGAGATGGTCTGAGATGACGATTGAG
AGGCAGCGCAATGAGGGGCTTCTGTGGAGCTCCTAGCTCCTACCTCCCAGTGGGCGTGTACCACCCACTTGTCTGCATTT
GTCGTGGCGCGCTAGTGGTCTTTCTTTTTT-CTCCACAACGGCGATGGAACGTGTAATTCTGTTTAAAGAAATGGAGTAC
GACAGTGTAATTCCGTTTAG-------ATATTGGACATGTAT--------AAGAGCGCCAAAGCTGGAAGCTAAAACAGC
GAGACACCC----CTCAATAGTCAATACACCATTTCCCC-----TCGAATACTCTGATGAAGAAGATGAGGCTCTTCTGC
TTGCTCGCGCTGCTGTTGCTACGGATGGCAACCATGCGAGCATCCGCTGGCGTGCAAGGAAGCCAAGCCGGGAACAGGAG
TACTCTTGCCTCCCAGGCCGGATGCCAGAAAAGTTGTGGCAACCTAAGTTTCGATTACCCGTTCGGCATAGGGCCGGGCT
GCTTCCGGCCGCCACAGCGAGACTTTGAGGTCATCTGCAACAA---CACCCACAGTGCC------TCCCCCAGGCTCTTC
CTGCACGACGGAATCACCGAGC-CGTCGGTGATATCATCACTGGCGATGGCGATGGCAGACCAGGTATTGATGTATCGTT
TTCCCAATCCGTCTCGGTGAGACCTGAGGTCGATGCATACAATATGTCCTGGAATCCTGGGAGATCACCCACTAGCTATT
CTTTATACTTAAACTTCACTGGTTGCTACTTCGACATGTATGTGCTCGAGCACAACACCAACAATACCGTGGGTCAGTGC
AGGACTACATGCGTTGATGAAGATATCACAGATACAGTGGCCAGGCAAAAATGCAATGGTAAAGGATGTTGCACCGCTTA
CGATATCTCTGGGTTTGGTGCCGGCTTCGATATGGTATGTGTCCGCAACAAGATTAGGAAGCCGAAGTTCAAAGCGCACA
GTAACCGAAGCTCCATATGAGATACAATTGATGTAACAA---CTGAT---CATGCTTCTATTTACTGGGCTATCGCCGTT
GATGAACCTC---------------GC---------------ACAGATTATGCATGTCTCAGCAACCATAGCTTCAGGAG
GCAATTCGGTTCATCTAACGTTGCT------------TATTATTGTGTGTGCGACAGTGGTTACAGAGGCAATCCATACC
TCCTAACAGATGGCTGCTCGCGTGACAAAGGTAATTACTCTGAGATAAAAAAATCCTAGCCTTTTCTTACAGTGTGTATT
ATTTTTCTTACTATATACAATAAAATTTCATAAATTTTCTTCAACAGTAACCAATCTTGTTCTCACATGCTCGCATATAT
AGGCTTCACAAAAAAATTAAAGCCATAAAAAGGCGGTGCTCTCCTCTTCGGCACAGCCATGGCTACTCTCACTTGTAGTG
TTGTTTCTTGCATCATGAGTTTATAGATATGGTTTTCCCCATGCATGGTATTCCAAAATGTTGTATCTTAGGGGTGAGGC
ATTTTGGAGTTTGGGCCCAATGCTCCCGCATGAATAGTAAAATCTAAAAATGTAAAAAATATCTAAAATTTCTGATTTTT
TAATGCACGGGTCTCCTAACTGCACACAAGTCTTTTCTTCACAAAATTTTTGACGTAGTTAGAAGAACAAAAAATGTTCA
TTGTAAAATAAATATGATCTTTTCAACTTTTTTTTTCTATTTTACTGCTCACGCGGGAGCATATGAGTTCAAGCTCGTTT
CAATTTTTTTTTTCTATTTTACTGCTCACGCGGGAGCATATGAGTTCAAGCTCGTTTCGAATTTCCGGTATCCTAGACCC
TTTTATTTCATAAGTTGTAGGATCATTCTACCATTTCTATGGTGCCACCTCCGATTTCACCTTGGGCCTTATGGAAAGAG
TTTTATCTATGATAAGATACAAATATAGTATATATCTCTCCTTATTCACAAAGGTGCCTCTTAGACTTTTGTCTGTGTGG
CCCGGCTAAAAGCTTGTACAGCTTGGAG
>chr6B_793
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------------------------------------------------------------------------CTGCATTT
ATGGTGGCGTGCTGGTGGTGTTTCTTTTTT-CTCCACAACAGCGATGGAACGCGTAATTCCGTTTAAA-ATTTGAAGTAA
GATGCCGTAATTCCATTTAGCAGAGTGATATTGCACATGTATAGATATTGCACATTT-----------AGCTAAATCAGC
CAGACGCCC----CTCAATA-------CACCATTTCCCCTCGGCTCGGATACTT---TGATGAAGATGAGGCTCCTCTGC
CTGCTCGTGCTGCTGTTGCTATGGACGGCAGTGGTGCGAGCATCTGCAGGCACGCACGGAAGCCAGGCCGGGAACAGGAG
TGCTCTTCCCTCCCTGGCCGGCTGCCCGAAGAGCTGTGGCAACCTCAGTTTCGACTACCCGTTCGGCATAGGGCCGGGCT
GCTTCCAGCCGCCACAGCAAGGCTTTGAACTCATCTGCAATAGAAGCACCCACGGTGCCTCGCAGCCCCCCAGACTCTTC
CTGCGCGACGGCATCACCGAGGTTGTCAATGACATCAGACCCGGCGACACAT---------CAGGTATTGATGTATCGTT
TTCCCAATCCGTCTCCGTGAGACCTGAGGTGGATGCATACAACATCTCCTGGAACCCTGGGAGATCTCTCGGTATCAATT
ACATATATTTAAACTTCACTGGTTGCGACTTCAACATGTATGTGCTCCAGCACGACACGAACAAGATGGTGGGTCAGTGC
AGTTCTACATGCCCTGACGAAGATATCACAGATACAGTGGCCAGGCAGGACTGCAACGGTACAGGATGTTGCACTGCCGT
AGGTTACTCTGAGTTGGGTGCCGGCTTGGACATCAAGTTTGTCCGCCACAAGATTGGAAAGCGGAAGTTCCAATCGCAGA
GTAACCGAAGCTCCATATGGGATACAATTAATGTAGTAACCTCTGAT---TACGCCTATATTTACTGGGCAATCGCCGTT
GATGA---------------------------------------AGATTATGCATGTCTCAGTAACCATAGTAGTG---G
GCAATTCGATTCAGCTAACGTCACT------------TATTATTGTTCCTGTGACCGTGGTTACCGAGGCAATCCATACA
---TAACCAATGGCTGCTCGCGTGACAAAGGTAATCACTCTGAGATATAAA-----------------------------
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>chr6B_794
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-------------------------------------------------------------------------TGCATTT
ATGGTGGCGTGCTGGTGGTGTTTCTTTTTTTCTCCACAACAGCGATGTAACGTGTAATTCTGTTTAAA-AATTGAAGTAC
GAGAGTGTAATTCCATTTAGCAGAGTGATATTGCTCATGTATATATATGCAAGACAGCCAACGCTGGAAGCTAAATCAGC
CAGACGTCC----CTCAATA-------CACCATTTCCCC-----TCGGATACTATGATGATGAAAACGAGGCTCCTCTGC
TTGCTCGCTCTGCTGTTGCTATGGACGGCAATGGTGCGAGCATCCGCTGGCGTGCAAGGAAGCCAGGCCGGGAACAGGAG
TGCTCTTCCCTCCCTGGCCGGCTGCCAGAAGAACTGTGGCAACCTGAGTTTCGACTACCCGTTCGGCATAGGGGCAGGCT
GCTTCCGGCTGCCGCAGCGAGACTTTGAGCTCATCTGCAACAA---CACCCACGGTGCCTCACAGCAGCCCAGACTCTTC
CTGCACGACGGCATCACCGAGGTTGTCAATGACATCAGACCCGGCGACACAT---------CAGGTATTGATGTATCGTT
TTCCCAATCCGTCTCCGTGAGACCTGAGGTGGATGCATACAACATCTCCTGGAACCCTGGGAGATCTCTCAGTATCGATG
GCGTATTACTAAACTTCACTGGTTGCGACTTCAACATGTATGTGCTCCAGCACGACATAAACAAGATGGTGGGTCAGTGC
AGTTCTACATGCCCTGACGAAGATATCACAGATACAATGGCCAGGCAGGACTGCAACGGTACAGGATGTTGCACTGCCGT
AGGTTACTCTGAGTTTGGTGTCGGCTTGGACATCAAGTTTGTCCGCCACAAGATTGGAAAGCGGAAGTTCCAAGCGCAGA
GTAACCGAAGCTCCATATGGGATACAATTAATGTAGTAACCTCTCAT---CAAGCGTATATTAGCTGGGCGATCGCCGTT
GATGAACCTG---------------GC---------------ACAGATTATGCATGTCTCAGCAACCATAGCAGTG---G
GCGATTCGATTCATCTAACGTCACT------------TATGTTTGTTACTGTGACCGTGGTTACCGAGGCAATCCATACA
---TAACCAATGGCTGCTCCCGTGACAAAGGTAATCACTGAGATATAAA-------------------------------
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>chr6B_794
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-------------------------------------------------------------------------TGCATTT
ATGGTGGCGTGCTGGTGGTGTTTCTTTTTT-CTCCACAACAGCGATGGAACGCGTAATTCCGTTTAAA-ATTTGAAGTAA
GATGCCGTAATTCCATTTAGCAGAGTGATATTGCACATGTATAGATATTGCACATTT-----------AGCTAAATCAGC
CAGACGCCC----CTCAATA-------CACCATTTCCCCTCGGCTCGGATACTT---TGATGAAGATGAGGCTCCTCTGC
CTGCTCGTGCTGCTGTTGCTATGGACGGCAGTGGTGCGAGCATCTGCAGGCACGCACGGAAGCCAGGCCGGGAACAGGAG
TGCTCTTCCCTCCCTGGCCGGCTGCCCGAAGAGCTGTGGCAACCTCAGTTTCGACTACCCGTTCGGCATAGGGCCGGGCT
GCTTCCAGCCGCCACAGCAAGGCTTTGAACTCATCTGCAATAGAAGCACCCACGGTGCCTCGCAGCCCCCCAGACTCTTC
CTGCGCGACGGCATCACCGAGGTTGTCAATGACATCAGACCCGGCGACACAT---------CAGGTATTGATGTATCGTT
TTCCCAATCCGTCTCCGTGAGACCTGAGGTGGATGCATACAACATCTCCTGGAACCCTGGGAGATCTCTCGGTATCAATT
ACATATATTTAAACTTCACTGGTTGCGACTTCAACATGTATGTGCTCCAGCACGACACGAACAAGATGGTGGGTCAGTGC
AGTTCTACATGCCCTGACGAAGATATCACAGATACAGTGGCCAGGCAGGACTGCAACGGTACAGGATGTTGCACTGCCGT
AGGTTACTCTGAGTTGGGTGCCGGCTTGGACATCAAGTTTGTCCGCCACAAGATTGGAAAGCGGAAGTTCCAATCGCAGA
GTAACCGAAGCTCCATATGGGATACAATTAATGTAGTAACCTCTGAT---TACGCCTATATTTACTGGGCAATCGCCGTT
GATGAACCTG---------------GC---------------ACAGATTATGCATGTCTCAGCAACCATAGCAGTG---G
GCGATTCGATTCATCTAACGTCACT------------TATTATTGTCACTGTGACCGTAGTTACCGAGGCAATCCATACA
---TAACCAATGGCTGCTCCCGTGACAAAGGTAATTACTC----------------------------------------
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>chr6D_814
A-------------------------------------------------------------------------------
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--------------GTCGTCTTTCTTTTTT-CTTCGCAACGCCGATGGAACGTGTAATTTCGTTTTACAAAATGGAGTAC
TCCAGTGTAATCCCGTTTAGCACAGTGATGTTGGACAGGTATATATGTGCAAGAGGGCCAACGCTGCAAGCTAAAGCAGC
GAGACACCTAAAGCTCAATA-------CACCATCTTCCC-----ACAAATACTGTGATGAAGAAGATGAGGCTCCTCTGC
TTGCTTGCGCTGCTGTTGCTACGGACGGCAACGGCACGAGCATCCGCTGCCGTGCAAGGAAGCCAGGCCGGGAACAGGAG
TAGTCTTCCGTCCCTGGCCGGCTGCCAGAAGAGCTGTGGCAACCTGAGTTTCGAGTACCCGTTCGGCATAGGGGCGGGCT
GCTTCCGGCCACCGCAGCGGGACTTTGAGCTCATCTGCAACAA---TGCCGACGGTGCCTCGCAGCACCCCAGACTCTTC
CTGCACGACGGCCACACGGAGGTCGTCGGTGATATCATCACGAGCGATGAGGATGGCTTACCAGAAATTGATGTATCATT
TTCCCGTTCCGTCTCCGTGAGCCCTGAGGTCGAGGCATACAACATGTCCTGGAATCCATGGAAATCTCCCTGTTACTATC
ATGTAAGTTTAAACTTCACTGGTTGCAACTTCGACATGTATATGCTCGACCCCGACACCAACAAGATGGTGGGTGGATGC
AATACTACATGCCCTCACGAAGATATCACGGATTCGGTGGCCAGGCAGGACTGCAACGGTACAGGATGTTGCACCACCCA
GGTTTACTCCGAGTTTGCTAGGGGCTTCGACATCAAGTTTGTCCGCCACAAGATTGGGAAGCTGAAGCTCAAAGCGCACA
ATAACCGAAGCTCCATATGGGATACGATTGATGTAACC------TCTAATGACGCCTTAATTACCTGGGCTATCGCCGTT
GATGAACCTG---------------GCCCCTTGGGAAACAGTACAGATTATGCATGTCTCAGCAACCATAGCAGCAGTCA
ACTGGCTTATCAGTATCACTATACAGATACTCCTCAGTATAATTGTTACTGTGACGGTGGTTACCGAGGCAATCCATACA
---TAACCGATGGCTGCTCGCGTGACAAAGGTAATTACTCTGTGATAAAAAAAATCCTAG-TTTTCTTATTGTGTTACTT
TTTTCCTTGCAGCATGCATATAAAG-----TAAATTTTCTTCAACAGTA-------------------------------
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>chr6B_1108
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------------CCAAGCCGGCTGCCAGGAGAGCTGTGGCAACCTGAGTTTCCAGTATCCATTCGGCATAGGGGTGGGTT
GCTTCCGGCCACCAGAGCGAGACTTTGAGCTCATCTGCAACAA---CATGCACGGTGCTTTGCAGTCCCCCAGACTATTC
CTGCACGACGGCATCACGGAGGTCACCGGTGATATCATCACCGGCGATGC------CAGACAAGAAATCGAGGTATCATT
TTCTCATTCCCTCTCCGTGAGATCTGAGGTCGACGCGTACAGCATCACCTGGAATCCTAGGAAATCTCCCGGTAGATATG
TTTCAGCACTAAGCTTCACTGGTTGCGACTTCGACATGTACGTGCTAGAGCATGGCACGAACAAGACGGTGGGTCAGTGC
ACTGCTACATGCCCTGTCAAAGATATCACGGATACGGTGGCTTGGCAGTATTGCAACGGTACAGGATGTTGCTTCACCAA
CGTCGATGCCGAGTTTGCTACAGGCATCGAGATAAAGTTTGTCCGCCACAAGATTGGACAGCTGAAGTTCCAAGCGAACA
GCAACCGAAGCTCTATATGGCATACAGTTGATGTAACC------GCT---GATTCCATTATTATGTGGGGTATCATCGTT
AATGAACATGGCCCCTTGCAAAACAGC---------------ACAGATTATGCATGTCTCAGCAAACGTAGCAGCAGTCA
CCAGTTCATATCATCT---GTCGCT------------TATGCTTGCGTGTGCGACAGTGGTTACCGAGGTAATCCGTACA
---TAACTGATGGCTGCTCGCGTGACAAAGGTAATTACTCTGAGATAAAAA-----------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
S-S------S---S------------------------------------------------------S-----------
-------------------------------------------------------S-----S-------------S----
--------------------SSSSSSS--------------------------S--------------------S-----
-------------------------S------SS-------------------------------S--------------
-------S-------------S--------S--S-----------S--------S-------------------------
-----------------------------S-----------------------S-------------------S------
-----------S---------S-------------------S-------SS-----------------------------
---------------S--------------------------S-----------------------S----S--------
S------S------------------S--------------------------S----------S--S------------
--S---------SS---S-----------------------------SS-S-----S----S---------------SS-
--S-SS-----S------------------S--SSSS-S-------S--------S------S-----------------
-------------------S-----------------------------------S-S----------------------
---------S--------------------------------------------------------------SS---SS-
--------S-------------------------------------------------------S--------------S
SSS----S---------------------------------------------SS-SSSSS--------SS----SSS--
S---SSS-SSSSSSSSSSS-----SSSSSS-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_733
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-------------------------------------------------------------------------GATTGAG
AGGCAGCGCAATG-------------------------------------------------------------------
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>reverse_2230
--------------------------------------------------------------------------------
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---------------------------------------------------------------------AGGGGTGAGGC
ATTTTGGAG-----------------------------------------------------------------------
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