>input_sequence_72378
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---------------------------------------------------------------ATGGCGGAGACGGAGTA
CCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACCACAACCTCCAGCAGGCCTTCAGCCAGTACGGCGAGATCC
TCGACGCCAAGGTAACC--AACCAACCAA---------------CTCCCAGATCCGTTGGAATTTCGCGTCCGATTTGCT
GTCCGTGTGGTAGATCTGTCCCGATCTTG-GGTTTGTGTGGTGGATCTGA--------------------CCGGATCTGG
--TGGTTTTTGTGTTTT--GTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGCAGGTCCCGTGGCTTCGGCTTCGT
CACGTTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCGCAACATCACCG
TCAACGAGGCCCAGTCCCGCCGGTCCGGCGGTGGGGGCGGCGG---------------------CGGCGGCTACGGCGGC
CAGCGCGGCGGTAGCGGAGGCTACGGCGGCG------------------GCGGCGGTGGCTACGGCGGCCAGGGCGGTGG
CGGCTACGGCCAGGGAGGCGGTGGCGGCTACGGCCAGGGCGGTGGTGGCTACGGCGGCCAGCGCGGTGGCGGCGGCTACG
GCGGCGGCGGCGGCGGCTACGGCGGCGGC---------GGTGGTGGCTACGGCGGCCAGC---------GTGGTGGCGGT
GACTCCGGCGGCCAGTGGAGGAACTGA-----------------------------------------------------
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>chr5D_1_TraesCS5D01G020900
AGGGCCGCTCTACGCGTCGGCCGTGGATCTTTCTAAAAGATCCGTCGCCTCGGCAACCGCCAGATGTACAACTATCCAAC
GTTCAATGTTGTTTCCACCATTGCATCTAGGACAGTGTTGCAGGATACTTTGCAAAAAAAAAAAAACCATGTTAAATCTT
TTGAATATAGGTGATGATGCAGGTGTTTTTTCTTCACTAATTTTTCAACATGGGCGTTGTTGCAGAAAGAAAATGCAACA
CAGATAATGTTGCAGAAAATATCTGCAGTATTTTTTCGTCTTTATTTTTTGCAACATGGTTGTTGTTGTTGCGGAAGGCA
ATTTTACAACACAGATGGTGTTGCAGAGAGATATACGCAAAAGGACATGCGTACACGCGTCACACAGAGAAGGCAGCGGA
TCGCTCGCGTGTGCGATCCGTCGCCTGAAGGTAAGCATTTCTAGAAAGATATTTGTGCACACATCTAGAAAGATTAGTGG
GATTATTGCAGCTCATACCCGGGAATAATTTTCTCAAGATTTGATGTGGTCATTTATAGAAAAAAAAAAGCAAACTCGAA
ATTTTCCTGCATTGTCCTAGGGTTAGTTACAGGGGAAAGCAAATTCAGATCTTTCTTCCTGTTGCCTTGGACAAGAAGAT
TCGAGGCGTGCCGCACCGCGGTGTGGGGCGCGCGGCCCGCGTGCGCGTAGCCGGGGCGAGAAATATCTCGCGGCCACCCA
CTCCCACTTGGCCGGCCCCGCATATTCCAAATCCCGAGACCCGCATCCTCACCCACCCGCCCCGTCGCTGACGCGTGGGC
CCCGCCGTGCGCGTGATGCGATCCGGGCGGCCACCTACCGCTATAAATCTCGCCCCACGGCGGGGCAGCGTCCTCCTCAT
CGCTCTCGGGGTTGGCTTCTCCTCCCCTTCCGGTTCGGGTTCTGGTTCGGTTCGGGTCCGA---------------GAGT
AGCTAGCCTAGTCTAGGGTTTCCGTAGTTCGGAGAGGAGAGAAAGGGAGAG--------ATCCATGGCGGAGACGGAGTA
CCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACCACAACCTCCAGCAGGCCTTCAGCCAGTACGGCGAGATCC
TCGACGCCAAGGTAACC--AACCAACCAA---------------CTCCCAGATCCGTTGGAATTTCGCGTCCGATTTGCT
GTCCGTGTGGTAGATCTGTCCCGATCTTG-GGTTTGTGTGGTGGATCTGA--------------------CCGGATCTGG
--TGGTTTTTGTGTTTT--GTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGCAGGTCCCGTGGCTTCGGCTTCGT
CACGTTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCGCAACATCACCG
TCAACGAGGCCCAGTCCCGCCGGTCCGGCGGTGGGGGCGGCGG---------------------CGGCGGCTACGGCGGC
CAGCGCGGCGGTAGCGGAGGCTACGGCGGCG------------------GCGGCGGTGGCTACGGCGGCCAGGGCGGTGG
CGGCTACGGCCAGGGAGGCGGTGGCGGCTACGGCCAGGGCGGTGGTGGCTACGGCGGCCAGCGCGGTGGCGGCGGCTACG
GCGGCGGCGGCGGCGGCTACGGCGGCGGC---------GGTGGTGGCTACGGCGGCCAGC---------GTGGTGGCGGT
GACTCCGGCGGCCAGTGGAGGAACTGAGCGGCGGGGCCCTCCAGTTATCGATCTATCTACCATC------TCGTCGTCTT
CGTCAGCAAGTTATCTTCA----------------GTTCCTGTGTCAGTCAGTCTGAGTCGTCGTGTGTGTCGTTGAGTC
CTGTGGTGTTTTTGATCGCGAGCTCGAGTGTCGCTCTGTCCGGGGTTAATTAGAGCTGGTTACGCGAGGAAGAAACAACA
TGTGT---TATCTTTCAGTCTT--GGTCGGTCGGTC-GTCGGTGATGCAGCAAT-CCCTTCTGTCATGGATTGGGATGTG
ATGTTGGAATATCCTATGTTTGAACTCGGTTTAAATG---GAAGAAAATGCAAGTCGTCATAGCTGCGAAATATCCTCCT
CTGTGTCCTGATTATTTTTGTTCCTTTCTCTCTACTGTTCTGAAGCATCCATCGATC-TTTGCT---------------T
AGATCTATTGAAATTGTTCTGTGAATCAGGAA------------------------AAAAAATATTCTAAACTTGCTGTC
ATTCGGACTGATTGCGAG--------------------------CATCCATATTCTAATC--------------------
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--CTGCATAAGATGCAAAACTTGCTGTCACCATCTTTCACAACTGACACGGAGCACAAGGGAAGTGTAGAATAAAAATG-
--TCATTTATGGTTTGGTTCAAACTTGATCAGATTACATACAGATGCCATGAGATGGCCAAAGCAGCAGCATGCCT----
--------------------------ATGGCTAAATGTCCAGAGAGTTTG-GTTGTTTCAGTCGAGGACATAGATGCGGG
AGGCGATGTCCTGAACCAGCCAGTCGAAGCCCTGGAGCAGGCCGTCGCCCGTGTAGGCGCTGCAGCCGACAATCTTCCAG
TGCCGGTCCTTGTTCATCACTTCAAGATTCAGAACCTGAATCCAAAACTCAACTCCAGTTACCATCGAATTCAAAG----
--ACTAAACATGTCAATTTAAGAAGACA---AAAAGCATCTTGGAGCGAAGACCACAGACTAGTATGTATAT--------
-GCTTGCTGGGATTGTTTTCCGAGGTTTTGGCTACTCCCTGAAGCGACGATCACAAGATGGTCATGGCATCATGCGACT
>chr5A_679
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--------------------------------------GCGTGCGCGTAGCGGGGGAAGGAAATATCTCGCGGCCACCCA
CTCCCACTTGGCCGGCCCCGCATATTCCAAACCCCGAGACCCGCATCCTCAGCCGCCCGCC----CGCTGACGCGTGGGC
CCCC----------GATGCGATCCGGGCGGCCACCCACCGCTATAAATGCGTGCCCCCGGCGGGGCAGCGTCCTCCTCAT
CGCTCTCGGGGTTGGCTTCTCCTCCCCTTCCGGTTCGGGTTCTGGTTCGGTTCGGGTTCGGTTCGAGAGAGAGGCCGAGT
AGCTAGCCTAGTCTAGGGTTTCGGTAG----------AGAGGAAGT--GAG--------ATCCATGGCGGAGACGGAGTA
CCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACAACAACCTCCAGCAGGCCTTCAGCCAGTACGGCGAGATCC
TCGACGCCAAGGTAACC--GACCGACCAACCCCTGTCTCCGATCTGCGCCGATCCGTTCGAATTTCGCGTCGTGGGCT--
---------GTAGATCTGACCCGATCTGG-GGTTTGTGTGGCGGATCTGA--------------------CCGGATCTGG
TGTGGTGTTTGTGTTTT--GTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGGAGGTCCCGTGGGTTCGGCTTCGT
CACGTTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCGCAACATCACCG
TCAACGAGGCCCAGTCCCGCCGCTCCGGCGGTGGGGGCGGCGG---------------------CGGCGGCTACGGCGGC
CAGCGCGGCGGTGGCGGAGGCTACGGCGGCG------------------GCGGTGGCGGCTACGGCGGCCAGGGCGGCGG
CGGCTACGGCCAGGGCGGCGGTGGCGGCTACGGCCAGGGCGGCGGTGGCTACGGCGGCCAGCGTGGTGGCGGCGGCTACG
GCG---------GTGGCTACGGCGGCGGC---------GGTGGCGGCTACGGCGGCCAGC---------GC---GGCGGC
GACTCCGGCGGCCAGTGGAGGAACTGAGCGGCGGGGCCCTCCAGTTATCGATCTATCTACCATC------TCGTCGTCTT
CGTCAGCAAGTTATCTTCAGTGTCGTCGTCGTCGTGTTCCTGTGTCAGTCAGTCTTGA--GTCGTGTGTGTCGTTCGGTC
CTGTGGTGTTTTTGATCGCGAGCTCGAGTGTCGCTCTGTCCGGGGTTAATTAGAGCTGGTTACGCGAGGAAGAAACAACA
TGTGT---TATCTTTCAGTCGGTCGTGT------TC-GTCGGTGATGCAGCAAT-CCCTTCTGTCATGGATTGGGATGTG
ATGTTGGAAT--CCTATGTTTGAAGTCAGTTTAAATGGATGAAGAAAATGCAAGT---GATAGCTGCGAAATATCCTCCT
ATGTGTCCTGATGC-TTTTATTCTTTTCTCTCTTTCGTTATGAAGCATCCATTATCTTTTTCTTCAAGCAAGCATATTGT
AGATCTAGTGAAATGTTCTGAAGCATCCACCTTCTGTTTAAGCAACAGATCGCACCAAG------------CTTGCTGCC
ATTTCAGTGAGTAATATAAAATTTAGACATTGCGATGTGCATCTCATCCACCTTCTGTTT--------------------
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--AAGCAACAGATCGCACCAACTGACGATTGCAGT----------ACGCAGAGCTCAATGAGAGTGCATAACAAAAGTTT
CATCATCTATGGTTTGGTTCAAACTTGATCGGATTACATGAGGTAGCCG-------------------------------
--GTGTAACCAATAACAGTAGTGCAGATGGCTAAATGTCCAGAGTTTGGTTGTTGTTTCAGTCGAGGACATAGATGCGGG
AGGCGATGTCCTGGACCAGCCAGTCGAAGCCCTGGAGCAGGCCGTCGCCTGTGTAGGCGCTGCAGCCGACGATCTTCCAG
TGCCGGTCCTTGTTCATCACTTCAAGATTCAGAACCTGGATCCAAAAACTCCACCCGGTTACCATCAAACTCGAAGAACA
CTAAACAACATGCCAATTATTAGTTTTTTTTAAAATCATCATGAAGCAAAGACCACAAACTTGTATGTATA---------
----TGCTAGGATTATTTTCCGTTTTGACTG----TCCTTAAAGCAAAGATCACAAGATGATCATG-------------
>chr5B_785
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----------------------------------------------------------------TCGCTGACGCGTGGGC
CCCGCCGCGCGCGTGATGCGATCCGGGCGGCCGCCCGCCGCTATAAATGCGTGCCCGCGGCGGGGCAGCGTCCTCCTCAT
CGCTCTCGGGGTTGGCTTCTCCTCCCCTTCCGGTTCGGGTTCTGGTTCGGTTCGGGTCCGA---------------GAGT
AGCTAGCCTAGTCTAGGGTTTCCGTAG----------AGAGGAAGGGAGAGGGAGATCCATCCATGGCGGAGACGGAGTA
CCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACAACAACCTCCAGCAGGCCTTCAGCCAGTACGGCGAGATCC
TCGACGCCAAGGTAACCCTAACCCCCCTTCC------------CCTCCCAGATCCGTTCGAATTTCGCGTCGTCGGCGC-
----------TAGATCTGGCCCGATCTGGTGGTTTCTGTGGCGGATCTGA--------------------CCGCGTCTGG
--CGGGTTTTGTTCTGTGCGTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGGAGGTCCCGCGGGTTCGGCTTCGT
CACGTTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCGCAACATCACCG
TCAACGAGGCCCAGTCCCGCCGCTCGGGCGGAGGG------------------GGCGGCGGCGGCGGCGGCTACGGCGGC
CAGCGCGGCGGTGGCGGAGGCTACGGCGGCGGCGGCGGCTACGGAGGCGGCGGCGGCGGCTACGGCGGCCAGGGCGGTGG
CGGCTACGGC---------------------------GGCCAGCGCG---------------GTGGCGGCGGCGGCTACG
GCG---------G------CGGCGGCGGCTACGGCGGTGGTGGCGGCTACGGCGGCCAGCGCGGCGGTGGC---GGCGGC
GACTCCGGCGGCCAGTGGAGGAACTGAGCCTCGAATCTC-CCAGTTATCGATCTATCTACCGTGTCGTCGTCGTCGTCTT
CGTTAGCAAGTTATCTTCGGT------GTCGTCGTGTTCCTGTGTCAGTC----TGAGTCGTCGTGTGTGT---------
----GGTGTTTTTGATCGCGAGCTCGAGTGTCGCTCTGTCCGGGGTTAATTAGAGCTGGTTACGCGAGGAAGAAACAACA
TGTGTTACTATCTTTCAGTCGGTCGGTCGGTCGGTCAGTCGGTGATGCAGCAATCCCCTTCTGTCATGGATTGGGATGTG
ATGTTGGAATATCCTATGTTTGAACA-AGTTTAAATGGATGAAGAAAATGCAAGT---CATAGCTGCGAAATATCCTCTC
T------------C-TTTGTTCCTTAAATTTCTCTTGTTCTGAAGCATCCATTCAAC-TTTCTTCAAGCTATAAGGA---
--------TTGAATTGCTCTGTGAAGCATGCA------------------------AAA------------CTTGCTGCC
AATTCAGCATAGTCTTTCACATAATCTTGATCTGATGATGTGCTACATTGCTTTGCTGATCTGTGATTACTAGCGATTTC
AACTTCATGTTCCCGAGTTGCTTAGAAATAAAACTTGATCTGATTAATGGAACTTCAATCCAAGGATCTTTTGTGTTCTG
TGCTGAATAAGATGCAAAACTTGCCGTCTCCAACGCTATCCAACTGAG-------CAAGGAGATTGCATAACAAAAGTG-
--TCATCTATGGTTTGGTTCAAACTT-ATCAAATTACATACATGTTACAAGGCA--GCCAAAGCAGCAGCATGCCTATGG
CTGTGTAACCAATAACAGTGGTGCATATGGCTAAATGTCCAGAGTTTGGTTGTTGTTTCAGTCGAGGACATAGATGCGGG
AGGCGATGTCCTGGACCAGCCAGTCGAAGCCCTGGAGCAGGCCGTCCCCGGTGTAGGCGCTGCAGCCGACGATCTTCCAG
TGCCGGTCCTTGTTCATCGCTTCAAGGTTCAGAACCTGGATCCAAAAACTCAACTCGGTTACCATCGAACTCAGAAGACA
CAACTGAACATGTCAATTAAAGAAGACA---AAGAGCATCTC-GAGCAAAGACCACAAACTAGTATGTATGTGATGTATA
AGCTTGCTGGGATTATTTTCCGAGGTTTTGGCTATTCCTTAATT-GAAGATCACAAGTGGATCATAACATCATCCGACT
>chr4D_1000
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--------------------------------------------------------------CATGGCGGACGTCGAGTA
CCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACCAGTCCCTCCAGAACGCCTTCTCCAAGTACGGCGACGTCA
TCGACTCCAAGGTACCG--ATCCCCCGTCTC------------CTCCCCCGATCCGCCCGA-------------------
----------TAGATCTCTAAATTCGTA-----------GGTGGATCTGTGGTGTTGTGCTTGCGGAACCCTGGATCTGA
--CGGGTTTGGTGTGTT--TTGGCG--GTGCAGATCATCACTGACAGGGAGACGGGCCGTTCCCGCGGGTTCGGGTTCGT
CACCTTCGCGTCGGACGAGGCGATGCGCCAGGCGATCGAGGCCATGAACGGCCAGGACCTGGACGGCCGCAACATCACCG
TCAACGAGGCCCAGTCCCGCCGCTCCGGCGGAGGCGGCGGCGGCTTCGGCGGCGGCGGCGGCGGCGGCGGCTACGGCGGC
CAGCGTCGTGAAGGAGGA---------GGCGGCGGCGGCTACGGCGGCGGCGGCGGTGGCTACGGA---------GGTGG
CCGCAGCGGC---------------------------GGCGGCGGTGGCTACGGCAGCCGTGAGGGCGGCGGCGGCTACG
GCA---------G------CGGCGGCGGC---------GGCGGCGGCTACGGCGGCAGCCGCGGCGGCTCC---GGCGGC
GGC-----------------------------------------------------------------------------
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>chr4A_1001
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---------------------------------------------------------------ATGGCGGACGTCGAGTA
CCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCAGTCCCTCCAGAACGCCTTCTCCAAGTACGGCGACGTCA
TCGACTCCAAGGTACCGTCC---------CC------------CTCCCCCGATCCGCCCGA-------------------
----------TAGATCTGTGAATTCG-A-----------GATGGATCTGTGGTTTTTTGCTTGTGGA------GATCTGA
--CCGGTTTGGTGTGTT--TTGGCG--GTGCAGATCATCACTGACAGGGAGACGGGCCGTTCCCGCGGGTTCGGGTTCGT
CACCTTCGCGTCGGACGAGGCGATGCGCCAGGCGATCGAGGCCATGAACGGCCAGGACCTGGACGGCCGCAACATCACCG
TCAACGAGGCCCAGTCCCGCCGCTCCGGCGGAGGCGGCGGCGGCTTCA---GCGGCGGAGGCGGTGGCGGCTACGGCGGC
CAGCGCCGCGAG------------GGCGGCGGCGGCGGCTACGGCGGCGGCGGCGGTGGCTACGGA---------GGTGG
CCGCAGCGGC---------------------------GGCGGCGGTGGCTACGGCAGCCGTGAGGG------------CG
GCG---------GCGGCTACGGCGGCGGC---------GGCGGCGGCTACGGCGGCAGCCGCGGCGGCTCC---GGCGGC
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S----SSS---------------------
-------------------------------S-------------------S--S------SSS----------------
-------S---------------------------S------------SSSSS---S-----------------------
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---------------------------SSSSSSSSSS----S--------------------------------------
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-----------------------S----------------------------------S------------SSSSSS--S
SSSSSSSSS------------------S----------------------------------------------------
--------------------------------------------------------------------S-----------
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----------------------S---------------------------------------------------------
------------S-------------------------------------------------------------------
---------------S--------------------------S--------------------S----------------
---SSSSSSSSS-------------------------------S--------------------------SSSS-----S
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---------------------------------------------------------------------------SS---
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--------------------SS----------------------------------------------------------
---------------------------S---------------------------SSS----------------------
S-----------SSS----S---S---------SS-----------------SS-S-----SS-----------------
-------S--------------------S-S----------------------------SSSSSSSSSSSS-------S-
---SSSS-SS---SSSSS--------------------------------SS----SS-S--------------------
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------------------------S---S---S--S-SS-S-SSS--S-S----S-----SS----S-S--S----S---
------S------------------------------------S-----S-SS-SS------------------------
--------------------------------------------SS-SSS------------------------------
-------------S-----------------------------------S--------------------S---------
--------------------------------------S--------SSSS-SS--S------------S----------
-----S------------S----------------------------S---------S----------------------
--------------S-------------------S---S-S------S------------S-----S------S-----
>forward_228
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------------------------------------------------CATGGGCGTTGTTGCAGAAA------------
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>reverse_1204
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---CGTGTGGTAGATCTGTCCCG---------------------------------------------------------
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>forward_390
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--------------------------------------------------GTACACGCGTCACACAGAGA----------
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>reverse_2519
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--------------------------------------ACAACTGACACGGAGCACAA----------------------
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