>input_sequence_72369
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----ATGGCCGGCGGGTCGCCGTGCGCGTCGTGCAAGCTGCTCCGGCGGCGGTGCACCAAGGACTGCATCTTCGCCCCCT
TCTTCCCAGCCGACGACCCCCACAAGTTCGCCATCGTCCACAAGGTCTTCGGCGCCAGCAACGTCAGCAAGATGCTCCTG
GTACGTATACATACTCCTACGTAGCTAGATGATATTTCATGCAATGACGCGCGGAGACACGCAGATGCTAACATATGAGA
TGCCATTACTTGCAGGAGCTGCCGGTGCAGCAGCGCGGGGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGCGCGGGT
GCGAGACCCGGTGTACGGCTGCGTGGGGGCCATCTCTTTCCTGCAGAACCAGGTGTCGCAGCTGCAGATGCAGCTCGCCG
TCGCGCAGGCCGAGATCCTGTGCATCCAGATGCAGCAGCGAGACGGCTGCCAGTCCAAGGACGACGCAGGACGAAGCGAC
GGCCACAGCCTGGCGGCCATGCAGCAGATGGTCGTCGACGACACCGCAGCAGCAGAGGCTTTCCTGATGCAGAACGGCGG
CGGCGGCTTCCCGCCGCAGCTGATGAGCAGCTACGGCGGCGCGCCGGCCTCCAACGTGCATCACTACGGGCAGCAGGACC
ACCTCAAGAGGGAGTCCCTGTGGACGTAG---------------------------------------------------
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>chr1B_1_TraesCS1B01G235700
TCTTCATGAAAACCAAACGGTTTTGCCTTGCTGAGCTGTACAAAGTCGGATAGTTAATTCT--TATTGTCAAAAAGA---
---AGACG-----------GTCATGGATTGGAGCCACAGCAGATGAAGGAAAAACATGGCCTCGAGACAAGGGAATTCCG
GAAGATTCTTGCCTCAGCAACTAGGTGCACCGTTGGCTTTACGCGACG-AAGGAGTAAGCTTCACACTGCTGGATGGATT
CTTTGCTTCAGGTCCACGATCTCATCTGCTCACGTACGTACGTCGCTTGTATCCCTGATCGACAGTAAACATATATACTA
CTAGTATATAGTATATCAAATTGCCTAAGCCACGTCCTGTACACACTGCACCGTTGGTTCATTTTAGGCCTTCTCAATGT
CGTACACGTTACTTACATGTATATATGCTATATATACAGCCTACAACACGAGTAAATCCGGCCGTCACATGCACGCACGT
AAATATGGTAATCACCCGAGCGACATGACATTCTGACAGAATTAATTGCGTGGTTTGCGTTGTCCTGGCTAAGATTCCTT
ATTGGTAATTAACGGTGACTTTGATGCCCTCGTGTCCAATGGAAGCATCACCCTCTGCCACACTTCGCCTCCGTGAAAAA
TTATGTCTGCGCTGTCTAGATTAATTAAGCTA--------CCCTTTACCCTTTACTTTCCAGCTA--------CTAG---
GTCAGAGGCAGGGCATCTCTGGAGAACCTAGCCAACAGCGCTGTACTAATTACCCTTGTCTCTCTCGGGCGTGGAGTCTC
TCTCAACAGCACACACATGCGTCGTCGTCGTCG---ACCGATATAAATAACCGCTCGCTTCGCACACTCCGGTCGCCATC
GATCTCCTTGTTGCTGAACTCGCTTCTCTAGCTCTAAGCCTCT--AGCTGCCCAAGCTGGCAGGCCCAAGTGCTCTAGCT
CCGCCTAACAGAAACTACACTAGAGATCTCCGGCCGGCCGCCGGCGGCGCTGATACACTGCAGGCACATACAACGGTCGC
GTTCATGGCCGGCGGGTCGCCGTGCGCGTCGTGCAAGCTGCTCCGGCGGCGGTGCACCAAGGACTGCATCTTCGCCCCCT
TCTTCCCAGCCGACGACCCCCACAAGTTCGCCATCGTCCACAAGGTCTTCGGCGCCAGCAACGTCAGCAAGATGCTCCTG
GTACGTATACATACTCCTACGTAGCTAGATGATATTTCATGCAATGACGCGCGGAGACACGCAGATGCTAACATATGAGA
TGCCATTACTTGCAGGAGCTGCCGGTGCAGCAGCGCGGGGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGCGCGGGT
GCGAGACCCGGTGTACGGCTGCGTGGGGGCCATCTCTTTCCTGCAGAACCAGGTGTCGCAGCTGCAGATGCAGCTCGCCG
TCGCGCAGGCCGAGATCCTGTGCATCCAGATGCAGCAGCGAGACGGCTGCCAGTCCAAGGACGACGCAGGACGAAGCGAC
GGCCACAGCCTGGCGGCCATGCAGCAGATGGTCGTCGACGACACCGCAGCAGCAGAGGCTTTCCTGATGCAGAACGGCGG
CGGCGGCTTCCCGCCGCAGCTGATGAGCAGCTACGGCGGCGCGCCGGCCTCCAACGTGCATCACTACGGGCAGCAGGACC
ACCTCAAGAGGGAGTCCCTGTGGACGTAGCTGGCTAGTCAAAGTCAACTTGTGTAGAACTTAGCTTGTCGCTAGCTATGC
ACGTGTAGGGGTTTAGGTTAATTGCGTTATGATGACTCGGCTTCTCTTCTTTT-ACATTTTGAA---------CTCTCTC
TCTCCGCCTCTCCCTGCTGGTGTTGTTGTCTTG---TAGGTGTTTGATCCAGAATTAGTACAAGATCCATGCTTTTGTGA
TCATTGTCATGTTCTTATATCTAAAAAAAAGGCTCACGCCCTGTTTGATAGATAAAACAACGATCA-TATAATCCAAAGC
ATACAATTCTGACACCGCAACACACATCCGAGGTAGGATACAACAATGCATAAGAACAGCTATGACATCACCCCAACCCA
TTCCAAGCCCGTAACGACCGCTTGAAGATGTCGGAGTTCTCTACTGTGACAAAGGTGTCATGAAGAGACGATGCTACGCC
CGACGAGCTGTGGACTCCAAGACATCACCTTCATAAAAGAAACAACACTGGAGCACCACCATTGCCCGATTCAAAAAAGA
TTAAGGTTTTTGCCCTGAACACCGCAACACTCATAGGGATCATTACTGATGGGGAACGAAGCATGAAAATAAAAAAATCC
TACAAAACACCCAAGATCCAATCTAGGAGATGCATAGCTACGGGAGAAAAGTGTGTTCACATACCCTTTTAGACCGAAAG
CGTTAGCGTCGTAACGTGGTTGATGTAGTCGTACTCTTCACTATCCAATCACGATCCAATCCGATCTAGCGTCAAACGGA
CGGCACCTCCGACATTACATGTGTTTAGCTCGATGGTGTCCTCTCCTTCTTGATCCAGCAAGCGAGGGAGAGGTGGTAGA
TGAGATCTGAACCAACACGACGACGTGGTGGTGGTGGCAGTGGAATTCCGGCAGGGCTTCGCCAAGCGCATACCGGTGAA
ATGTGGGAGGTGTTGGGAGAGGTAATGGGCAAGGGTCGAAGGTTGGTTGCCCCCAACGCCTCCCCACCTTTATATAGATG
TGG
>chr1D_1
TCTTCATGAAAAACAAACGGTTTTGCCTTGCTGGGCTGTACAAAGACGAGTATTTAAATCTTATATTGTCAAAAAAA---
---AGACGGGTAGTTAAATGTCATGGATTGGAACCACAGCAGATGAAGGAAAAACATGACCTCGAGACAAGGGAATTCCG
GAAGATTCTTGCCTCGGCAACTAGGTGCACCGTTGGCTTTACGCGACGGAAGGAGTAAGCTTCACACTGCTGGATGGATT
CTTTGCTTCAGGTCCACGATCTCATCTACTCACGTACGTACGTCGCGTGTATCCCTGGTCGACAGTAAACATATATACCA
GTACTAGTACTCGTAG----TTGCCTAAGCCACGTCCTGTACACACTGCACCGTTGGTTCATTTTAGGCCTTATCAATGT
TCTACACGTTACTTACATGTATACATGCTATATATACAGCCTACAGCACGAGTAAATCCGGCCGTCACATGCACGCACGT
AAATATGGTAATCACCCAAGCGACATGACATTCTGACAGAATTAATTGCATGGTTTGGGTTGTCCTGGCTAAGATTCCTT
ATTGGTAATTAACGGCGACTTTGATGCCCTCGTGTCCAATGGAAGCATCACCCTCTGCCACACTTCGCCTCCGTGAAAAA
TTATGTCTGTGCTGTCTAGATTACTTAAGCTA--------CCC-TTACCCTTTACTTTCTTCAAGTGATCCAGCTAG---
GTCAGAGGCAGGGCATCTCTTGAGAAACTAGCCAACAGCGCTGTACTAATTACCCTTGTCTCTCTCGGACGTGGAGTCTC
TCTCAACAGCACACACATGCGTCGTCGTCGTCG---ACCGATATAAATAACCGCTCGCTTCGCACACTCCGGTCGCCATC
GATCTCCTTGTTGCAGAAGTCGCTTCTCTAGCTCTAAGC--CT--AGCTGCCCAAGCTGGCAGGCTCAAGTGCTCTAGCT
CCTCCTAACAGAAACTACACTAGAGATCTCCGGCCGGCCGCCGGCGGGGCTGATACACTGCAGGCACATACGACGGTCGC
CTTCATGGCCGGCGGGTCGCCGTGCGCGTCGTGCAAGCTGCTCCGGCGGCGGTGCACCAAGGACTGCATCTTCGCGCCCT
TCTTCCCCGCCGACGACCCCCACAAGTTCGCCATCGTCCACAAGGTCTTCGGCGCCAGCAACGTCAGCAAGATGCTCCTG
GTACGTA--CATACTCCTACGTAGCTGGATGATATTTCATGCAATGACGCGCGGAGGCACCCAGACGCTAACATATGAGA
TGCCATTACTTGCAGGAGCTGCCGGTGCAACAGCGCGGGGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGCGCGGGT
ACGGGACCCGGTGTACGGCTGCGTGGGGGCCATCTCCTTCCTGCAGAACCAGGTGTCGCAGCTGCAGATGCAGCTCGCTG
TCGCGCAGGCCGAGATCCTGTGCATCCAGATGCAGCAGCGAGACGGCTGCCGGTCCCAGGACGACGCAGGACGAAGCGAC
GGCCACAGCCTGGCGGCCATGCAGCAGATGGTCGTCGACGACACCGCGGCGGCAGAGGCTTTCCTGATGCAGAACGGCGG
CGGCGGCTTCCCGCCGCAGCTGATGAGCAGCTACGGCGGCGCGCCGGCCTCCAACGTGCATCACTACGGGCAGCAGGACC
ACCTCAAGAGGGAGTCCCTCTGGACGTAGCTAGCTAGTCAAAGTCAACTTGTGTAGGACTT-GCTTGTCGCTAGTTATGC
ACGTGTAGGGGTTTAGGTTAATTGCGTTATGATGACTC---TTCTCTTCTTTTTGCATTTTGAACTC----CTCTCTCTC
TCTCTACCTCTCCCTGCTGGTGTTGTTGTGTTGTACTAGGTGTTTGATCCAGAATTAGTACGAGATCCATGCGTTTCTGA
TCATTGTCATGTTCTTATCT-----AAAAAGGCCCACCCT-TGTTTTATAGATAAAGCAACGATCATTACAATCCAAAGC
ATACAACTCTGACACCACAACACACATCTGAGGCAGGATACAACAATGCATAAGAACAGCTACGACATCACCCCAACCCA
CTCCAAGCCCGTAACGACCGCTTGAAGATGTCAGAGTTCTCTATCGTGACAGAGGTGTCACGAAGAGACGATGCTGCGCC
CGACAAACTGTGGACTCCAAGACATCGCCTTCGTAAAGGGCACAACACTGGAGCACCACCATTGCCCGATTAAAAAAAGA
TTAAGGTTTTTACCCAGAGCA-----------------------------------------------------------
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>chr1A_1
TCTTTATGAAAAACAAACGTTTTTGCCTTGCTGGGCTGTACAAAGTCGGGTAGTTAAATCT--TATTGCCAAAAAAGAAG
AAGAGGCGGGTAGTTAAGTGTCATGGATTGGAGCCACAGCAGATGAAGGAGAAACACGACCTCGGGACAAGGGAATTCCG
GAAGATTCTTGCCTCAGCAACTAGGTGCACCGTTGGCTTTACGCGACGGAAGGAGTAAGCTTCACACTGCTGGATGGATT
CTTTGCTTCAGGTCCACGATCTCATCTGCTCACGTACGTACGTTGCTTGTATCCCTGGTCGACAGTAAACATATATACTA
GTACTAGTACTCGTAG----TTGCCTAAGCCACGTCCTGTACACACTGCACCGTTGGTTCACTTTAGGCCTTATCAATGT
CGTAGACGTTACTTACATGTATATATGCTATATATACAGCCTACAGCACAAGTAAATCCGGCCGTCACATGCACGCACGT
AAATATGGTAATCACCCGAGCGACATGACATTCTGACAGAATTAATTGCGTGGTTTGCGTTGTCCTGGCTAAGATTCCTT
ATTGGTAATTAACGGCGACTTTGATGCCCTCGTGTCCAATGGAAGCATCACCCTCTGCCACACTTCGCCTCCGTGAAAAA
TTATGTCTGTGCTGTCTAGATTAATTAAGCTACCCTTAGTCCC-TTACCCTTTACTTTCTTCAAGTGATCCAGCTACTAT
GTCAGAGGCAGGGCATCTCTTGAGAAACTAGCCAACAGCGCTGTACTAATTACCCTTGTCTCTCTCGGGCGTGGAGTCTC
TCTCAACAGCACACACATGCGTCGTCGTCGTCGTCGACCGATATAAATAACTGCTCGCTTCGCACACTCCGGTCGCCATC
GAGCTCCTTGTTGCTGAACTCGCTTCTCTAGCTCTAAGC--CTCTAGTTGCCCAAGCTGGCAGGCTCAAGTGCTCTAGCT
CCTCCTAACAGAAACTACACTAGAGATCTCCGGCCGGCCGCCGGCGGCGCTGATACACTGCAGGCACATACGACGGTCGC
GTTCATGGCCGGCGGGTCGCCGTGCGCGTCCTGCAAGCTGCTCCGGCGGCGGTGCACCAAGGACTGCATCTTTGCCCCCT
TCTTCCCCGCCGACGACCCCCACAAGTTCGCCATCGTCCACAAGGTCTTTGGCGCCAGCAACGTCAGCAAGATGCTCCTG
GTACGTG--CATACTCCTACGTAGCTAGATGATATTTCATGCAATGACGCGCGGAGACACGCAGACGCTAACATATGAGA
TGCCATTACTTGCAGGAGCTGCCGGTGCAGCAGCGCGGGGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGCGCGGGT
GCGGGACCCGGTGTACGGCTGCGTGGGGGCCATCTCCTTCCTGCAGAACCAGGTGTCGCAGCTGCAGATGCAGCTCGCCG
TCGCGCAGGCCGAGATCCTGTGCATCCAGATGCAGCAGCGAGACGGCTGCCAGTCCCAGGACGACGCAGGGCGAAGCGAC
GGCCACAGCCTGGCGGCCATGCAGCAGATGGTCGTCGACGACACCGCGGCGGCAGAGGCTTTCCTGATGCAGAACGGCGG
CGGCGGCTTCCCGCCGCAGCTGATGAGCAGCTACGGCGGCGCGCCGGCCTCCAACGTGCATCACTACGGGCAGCAGGACC
ACCTCAAGAGGGAGTCCCTGTGGACGTAGCTAGCTAGTCAAAGTCAACTTGTGTAGGACTTAGCTTGTCGCTAGCTATGC
ACGTGTAGGGGTTTAGGTTAATTGCGTTATGATGACTC---TTCTCTTATTTTTACATTTTGAACTCCTCTCTCTCTCTC
TCTCTACCTCTCCCTGCTGGTGTTGTTGTGTTGTACTAGGTGTTTGATCCAGAATTAGTACGAGATCCATGCTTTTCTGA
TCATTGTCATGTTCTTATCT-----AAAAAGGCTCACCGCCTGTTTTATAGATAAAGCAACAATCATTACAACCCAAAGC
ATACAACTCTGACACCACAACACACAT---AGGCAGGATACAACAATGGATAAGAACAACAACGACGTCACCCCAACCCA
CTCCAAGCCCGTAACGATCGCTTGAAGAT-TCGGAGTTCTCTACCGTGACACAGGTGTCACAAAGAGACGATGATGGGCC
CGATGAACTGTGGACTCCAAGACATCGCCTTCATAAAAAGAACGACACTGGAGCACTACCATTGCCCGATTCAAAAAAGA
TTAAGGTTTTTACCCAGAGCA-----------------------------------------------------------
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>SNPs
------------S--------------------S---------------S-------S-----------------S----
----------------------------------------------------------S---------------------
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---------------------------------------------------------S----------------------
S--S--SSSSSSS--SSSSS----------------------------------------------------S-------
---------------------------------------------S----------------------------------
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---------------S----------------------------------------------------------------
---------S---------------------------------S---------------SSSSSS---------------
--------------------S-----S-----------------------------------------------------
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---------------------------------------SS------------------------S--------------
--S--------------------------------------------------------------------S--------
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-------S------------------------------------------------------------------------
-------SS--------------------------------------------------------S--------------
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---S--------------------------------S-------------------------------------------
--------------------------------------------------------S-----------------------
-----------------------------------------------S--S-----------------------------
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-------------------------------S------------------------S-----------------------
--------------------------------------SSS---------------------------------------
----SS-----------------------S-------------------------------S--------------S---
------------------S-SSSSS------------S--------S---------S------------S----------
------S---------S-----------S----S----------------------------S-----------------
S-------------------------------------------S------S--------S--------------S----
------S-------------------S------------S----------------------------------------
-----------S---S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_747
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-------GCAGGGCATCTCTGGAGAAC-----------------------------------------------------
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>reverse_2694
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-----------------------------------------------------CAACGCCTCCCCACCTTTAT-------
---
