>input_sequence_72368
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----------------------------------------ATGGCGTCCATGC------TGTGCTCCTA------CTCCG
TCTCCATGCCCGCCGCCGCCAGGGCTCCGCTCCTCCGGTCCAA------------------CTCCCTCGGGTTCGCCACC
TCGCAGCTCGCCG------GCCTCAGCCTCGGCCTCACCTCCACGGCC---GCGGTCTCCCTCCCCACCAAGAACACCAT
CGTCGCGCGTACGTCCCTCCCTTC-----------CCCTCCCTCCCTCCCTTTGTTCCCCTGCCAAGTCTAA--------
-----------------------------------------------GTTGCATTGCTCTGCTT---TTCTTCAGAGTTG
AGTT-----CAGGCTTGAAAAGAGATAC---AT----------------------ACATTACATAGCA------------
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----------------------------------------------------TAGGTAGTGGATGA--------------
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-----------------------------------------------ACATGCA-----------------------TTA
TTATCTTCCCAAAAAGAGTATCTATCTATC--------------------------TATCAATCAGTTGAATGA---ATT
CAGTAGGTAAGAAAGAAAGAAAGAAAGAAAAGAATGA-----------------ATGTGAATCTGATGTGTCATGGTTCT
TCAGGCCGGATCTGCCCCTTCTTGGAGAAGAAGACGAACCGGGCCAACAAGGTGTCCTTCTCCAACCACAAGACCAAGAA
GCAGCAGTTTGTCAACCTGCAGTACAAGAAGCTGTGGTGGGAGGCCGGCAAGCGCTACGTCAAGCTCAGGCTCTCCACCA
AGGCCCTCAAGACCATCGAGAAGCACGGCCTCGACGCCGTCGCCAACAAGGCCGGGGTCGACCTCAACAAGAAATGA---
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>chr1B_1_TraesCS1B01G000600
ATACTATCAAATGCAGTGTCAGTGAATGGTGTTCCTTTATCATGGTTGAAGGTTGCATGTCTTCTGCTAGGTTCATTGAT
ACTTCTCGGTATGTACTTGAATGTTTCTTACCTAATTTTTTAGTGGCTACTATTCTTAGTGGACAGATATAAGGTTTACA
TGATAATTGTTGTCGAGTCACTCAAATACATGCATGTTCGTCTGCTCTGACGGCTACAAGGAGCAAGAGATAGTGGGATG
AAGGATGAGTGGGGATAGGGCGAGACGGAGCTATATAGAGAGGGGAAGAGTGGAGAGATAAGGTTTACGTGACAATTATT
GTCGAGTCACTCAAATACATGCATTGTAGCCCGTAGCAACGCACGGGCATTCTGCTAGTTTACATAGTTAGATGATGTTT
ACATCTAATATTTCCTACCAAGTTCTAAAAACCAACCGATGTATGATGTTCGGTGTATTCTTTTGTGTGTGCATCCGAAT
GGCATATTAATAGTTGTTGGTGTTTTCTCATGATGTGTTTGCAACTCCGCATGAAAAAAGAGACTGAGGTATGATGTTGT
TGGTGTTTTCTCATAGTTGTTGGCAAAGGATGTTGGCAAAGGATGATTGACGAGGCCAAATTCTTTCTCCTTCACGAGTT
TCTGCATTCCGATGAGTATTTGAGAAGGAAAAAAAATCAAGTCTTTAAAGAATCGATTGTGCCAACGAGAGGTTGTGTTG
ACATTGGACGGTCGTCATGTCCCTCGTTGGTCCTTGATCCCATCGCCGCAAACACTTGAACCCGAGCCCGTGATGGAAAA
CAAACTGGCCCAAAACACTGGAACGACCGGCCCAAAGCTGGTTGGTCTTGTTTGTTTTTTTGAGAACTCGAATTCACAAG
TGGGATTGGGCCGGCCCGCCATGTTTCTAGTAGTTAGTTATTATCCTCCTCCTCCTCCTCTTCCGTCCGTCTTATCCTGA
GTCTGTGAGTGAGTCTAGTTTGGCATCCATCCATCCATCCATGGCGTCCATGC------TGTGCTCCTA------CTCCG
TCTCCATGCCCGCCGCCGCCAGGGCTCCGCTCCTCCGGTCCAA------------------CTCCCTCGGGTTCGCCACC
TCGCAGCTCGCCG------GCCTCAGCCTCGGCCTCACCTCCACGGCC---GCGGTCTCCCTCCCCACCAAGAACACCAT
CGTCGCGCGTACGTCCCTCCCTTC-----------CCCTCCCTCCCTCCCTTTGTTCCCCTGCCAAGTCTAA--------
-----------------------------------------------GTTGCATTGCTCTGCTT---TTCTTCAGAGTTG
AGTT-----CAGGCTTGAAAAGAGATAC---AT----------------------ACATTACATAGCA------------
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----------------------------------------------------TAGGTAGTGGATGA--------------
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-----------------------------------------------ACATGCA-----------------------TTA
TTATCTTCCCAAAAAGAGTATCTATCTATC--------------------------TATCAATCAGTTGAATGA---ATT
CAGTAGGTAAGAAAGAAAGAAAGAAAGAAAAGAATGA-----------------ATGTGAATCTGATGTGTCATGGTTCT
TCAGGCCGGATCTGCCCCTTCTTGGAGAAGAAGACGAACCGGGCCAACAAGGTGTCCTTCTCCAACCACAAGACCAAGAA
GCAGCAGTTTGTCAACCTGCAGTACAAGAAGCTGTGGTGGGAGGCCGGCAAGCGCTACGTCAAGCTCAGGCTCTCCACCA
AGGCCCTCAAGACCATCGAGAAGCACGGCCTCGACGCCGTCGCCAACAAGGCCGGGGTCGACCTCAACAAGAAATGAAAT
GGTCCATACAATTCAGCTTGAGACCAGGCTCCTCCCCTAGCTACATGGTCTCCTCCTCTTGTTGGTTTTCTCACATGATG
CATCTACCCTCTCAGTGTAATGTA----------GTATGCAAAAAAGATCTCCCCCCGT---------------------
----TTTGCT-------------------------------------------ATTTATTATCTTGATTGATGAGTTCAT
GTTAAGCATCATACT------------------------------------GTGGGTTTGTGCCTTGCAGCTACAAACCA
AATTGATGAGCGGAAAGTGATTT-----ATCAGCAAAGAAATTGTTACTCCCTACGATCCAAAAAAAAAGTGTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGCTGAACATGAATTAAGAGGCTGGCAATTTTGTCAGTTAATGTTA----------------
---------------AACATGTGATTGTTCAGCTGTCCATTGCTCCCAAATTGATGTGG---AAAGGAA-----------
--------------------GGAAAAAGGAGAAGGAAGCTGCAGAGAATCAATGGGGATTTGCATGTCTCCAAATTTTGA
GCTATTTTCTAGTTTATTATTCCCATTCTACCTTTAGTACTAGTACATAAAATAGATAGTA----------TTTCCGTTC
AACAATCTGTTGATACTAGTCATTTATGAGATGATGGTAACACATCGTAGGAGGAAGCAAAAATATTCACCAATACTGCA
GCATATGAATTCAAGATCATCCGGAAAACCGAAGAAGGTTACGTGCTTTTACCCCCACACACACCCCGCACCGTAAACCC
GGGCAGATACATTACCCGTGTCCCCGCAATCCCACGTAACATTTATGTGTCATATCATCCAGATTTAACAC
>chr1A_983
GCATC---------------------------------------------------------------------------
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-----------------------------------CATCCATGGCGTCCATCTCCATGATGTGCTCCTACACCGTCTCCG
TCTCCATGCCCGCCGCCGCCAGGGCTCCGCTCCGCCGCGCCAACG---------------CCTCGCTCGGGTTCGCCACC
TCGCAGCTCGCCG------GCCTCAGCCTCGGCCTCACCTCCACGGCCACCGCGGTCTCCCTCCCCACCAAGAACACCAT
CGTCGCGCGTACG-------------------------TCCCTCCCTCCCTTTGTTCCCCTGGCCTGGCAATTTTAATTC
CTCACTTTGGTCCTCCATCGGCCGGATCTCGGTGGTGTACATTTTGGGTTGCATTGCTCTGCTCTTCTTCTTCATAGTTG
AGTT-----CAGGCTTGAAACAAAAGTTGGGCAGGTAGGTAGATTAATTGGATGAACATTAGGTAGATTAATTGGGCAGC
AAAGCATACATTCTTTCTTTCTTCCAAGGGCCATAACATAATTGGATTGGGTATGTACATAACTGGAGATGGGATGGAGG
TCTGAGCCCGGAACTGGAGACTGTCTGTCCAAAATTGTTGCAGATATCCGAATTGCTCTTCTCTTCTCTTTGGATGCGCC
TTGAAAATGAATGAATTGCAATGGTTGATGGTGATGGCTATAAACTCACACCTAGGTAGTGGTGTGGTGGTCAGATGCTA
GTAGTTGTAGCCTCGCCCGAGTGGTTGTCAAGCTAAATGAATCGCTTCTGTTTCGACTAAATATATATATGAATCGCTTG
TGCTTTTTTTGGTCCTGTTTTATTTAGCTACAGACATTTATTTACATACATGCA-----------------------CTA
TTATCTTCCCAAAAAGAGTATCTATCTATC--------------------------TATCTACCAGTTGAATGATTAATT
CAATGGTTAAGAAAGAAAGAAAGAAAGAAAGAGGCATTGATGAATGAAGGAATGATCTGAATCTGATGTGGG-------T
TCAGGCCGGATCTGCCCCTTCTTGGAGAAGAAGACGAACCGGGCCAACAAGGTGTCCTTCTCCAACCACAAGACCAAGAA
GCAGCAATTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGCCGGCAAGCGCTACGTCAAGCTCCGCCTCTCCACCA
AGGCCCTCAAGACCATCGAGAAGCACGGCCTCGACGCCGTCGCCAAGAAGGCAGGGATCGACCTCAACAAGAAATGAAAT
GATCGATGAGCCATAGTTAAGGCCTCCTAGCAACAACA------------------TCTTCTTGATTTCCTCA-------
CATCAACCATTTCAATGTAATGTA----------GTATGCAAAATGGATTTATGTCCAGTTTTCCTTTTCTCCCCTTTTG
TGTCGGTTCCTTCCTTCCTAGTGCGATTTGTGCAAGTAACCTTATAAATGCCCATTTTC---CTTGATGAGTTAGTTGAT
GTTAAGCATCATACCGGATCATCGTCATCATCATGTATATGTAGTTGTGCAGTTGGTTTGTGCCTTTCAGCTGCAAACCA
ACCTGATGTTTTA----TGATTG-----ATCAGGGAAGGATGTTTTATGATTCTTGGTTCAGATGTGGAGTAT-------
-----CCGAGTCAGAGAAATGGTAGCTA----------------------------------------------------
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-----------------------AACATGAATTAAGAGGCTGGCAATTTAGTCAGTTAATGCTAAGCATCATACTTAGTA
CTGCTAGTGTGGATCAACATGTGATTGTGCAGCTCTCCGTTGCTCCCAAATTGATGTGGAAAAAAGGAATTCTTCCTACT
ATCGTTGTTGGTTCAGCTTCGGCACAAAGAGAACGAAGCTGCACAGAAGCAATGGGGATCTGCATGTCTCCAAATTTTGA
GCGATTTTCTAGTTTATTACTCTGGATCTACCTTTAGTAGTAGTACATATAAATAAAATAGATTAAGATTGTTTCCGTTC
AACAATCTGTTGATACTAGTCATTTGTGAGA---TGATGGTA--------------------------------------
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>chr1D_992
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-------------------------------CATCCATCCATGGCGTCCATGC------TCTGCTCCTA------CTCCG
TCTCCATGCCCGCCGCCGCCAGGGCTCCGCTCCTCCGGTCCAGCGCTAGCTCCTACGCCACCTCGGTCGGGTTCGCCACC
TCGCAGCTCGCCGGCCTCAGCCTCAGCCTCGGCCTCACCTCCACGGCC---GCGGTCTCCCTCCCCGCCAAGAACACCAT
CGTCGCGCGTACGTCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACC------------------TTTCATTC
CTTACTTGTATTCCACATTTGGTG--------------------TGGGTTGCATTGCTCTGCTTTTCTTCTTCAGAGTTG
AGTTCAGTTCAGGCTTGAAAGGTTGTGTGTGAT----------------------ACATTACGTAGTA------------
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----------------------------------------------------TAGGTAGTGGATGA--------------
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-----------------------------------------------ACATGAGATTTATTTACTTGCCTAGCTGCGTTA
TTATCTTCCCAAAAGGAGTATCTATCTTCTTCTTCTTTTTTTGAGGATAAAAGGAGTATCTATCGGTTGAATGC---GTT
CAGTGGTTAAGAAAGAAAGAAAGAATGAATGA-------ATGAAAGAATGAATGATCTGGATCTGATGTGGG-------T
TCAGGCCGGATCTGCCCCTTCTTGGAGAAGAAGACGAACCGGGCCAACAAGGTGTCCTTCTCCAACCACAAGACCAAGAA
GCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGCCGGCAAGCGCTACGTCAAGCTCAGGCTCTCCACCA
AGGCCCTCAAGACCATCGAGAAGCACGGCCTCGACGCCGTCGCCAAGAAGGCGGGGATCGACCTCAACAAGAAATGAAAT
GATCGATGAGCCATAGTTAAGGTCTCCTAGCAACAACA------------------TCTTCTTGATTTCCTCA-------
CATCAACCATTTCAATGTAATGTAATGTAATGTAGTATGCAAAATGGATTTATGTTCAGCTTTCCTTTTCTCCCCTTTTC
TTGATTTGCT-------------------------------------------ATTTTC---CTTGATGAGTTATATAAT
GTTAAGCATCATACTGGATCAT---------------TATGTAGTTGTGCAGTTGGTTTGTGCCTTTCAGCTGCAAACCA
AATTGATGTTTTA----TGATTGGGATGATCAGGGAAGGATGTTTTATGATTCTTGGTTCAGATGTGGAGTATCCTCGTT
TGAACCCGAGCCAGAGAAATGGTAGCTACAAACCAAATGCATCAGGCTACTCTGG-------------------------
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-------------------GCTGAACATGAATTAAGAAAG----------------------------------------
------------------------------------------------AATTGATGTGG---AAAGGAATTCTTCCTACT
ATGGTTGTTGGTTCAGCTTCGGGAAAAAGA--------------------------GATCTGCATGTCTCCAAATTTTGA
GCGATTTTCTAGGTTATTACTCTCAGTCTACCTTTAGTAGTAGTACATAATATAGA---TA----------TTTTCGTTC
AACAATCTGTTGATACTAGTCATTTATGAGA---TGGTAACACGTCGCAGGAAGAAGCAAAA------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------
----------------------------------------------------------------S---------------
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---------------------S----------------------------------------S-SS-S-S-S--------
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--------------------S--S--SS----------------------------------S---S-------------
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------------------------------------------------------------S-------------------
----S-S-----------------------SSSSSSS-------------------S-------------SSSSSSSSS-
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------------S-------------------------------------------------------------------
----------------------------------------------S-----S---S-----------------------
-S--S--SSSSSSS--S-SSS-S-SSSSSS-SS-SS-SSSSSSSSSSSSSSSSSSS----S---S---S----SSSSSSS
----S---S-S---S-----------------------------SS---S-SSSS--SS---------------------
---------------------------------------------------------SSSSS------SSS-S----S--
-----------------------------------------------------S------------S-----S-------
--------SSSSSSSSS-----S----------SS---S-SS-S---SSSSSSSS-S-S--S-SSSSS---S-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS------------------------------S-----------S------------------
----------------------------S-----S---S-----------------------------------------
----------------------S----S-----S---------S----S----------S--------------------
--S----------------S--S--S-------------S----------------S-S---------------------
-------------------------------SSS---------S---S----S---------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_827
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-------GCCCAAAACACTGGAACGAC-----------------------------------------------------
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>reverse_3358
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GGGCAGATACATTACCC------------------------------------------------------
