>input_sequence_72366
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------------------------------------------------------------------------ATGTACCA
CCATAACAGTGGCGAGGTTGCCAGCTTCCACTTCCTCCCGCCCCCAAACCCTTCCTCCTCCTTCACCACCCACCACCACA
TGAACATGGCCTTGCCCCCTCAAGCCTACTTCCCGCCCTCCTTCGATCCTGCCGCTCTACTCGCCGGTGACGACGACGTG
GCAGCAGCCTTTGAGTTTGACACCATCCTACTG---GAAGAAGCGGCTCACCTCGCCGGCGGCAATGGCTCGCCCAGCTC
GGGCTCCGACGCCGGTGGCGGAAACTACTGCCAGGTGGGCGGTGCTGGCACTGCAGTTGGCGCCGCGGAGGAGGAGAGGA
GGCGGCGGCGAATGGTCTCGAACCGGGAGTCGGCGCGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTGAGCGAGCTGTGG
GCGCAGGTCACGCACCTCCGCGGAGCCAACCGCCGCCTCCTCGACGAGCTCAACCGCGCATTGCGCGGGTGCGCCGACGC
CCGCCGCGAGAGCGCCAAGCTCAGGGACGAGAAGGCCAAACTGAATGAGAAGCTCGAGCAGCTGTTGCAGCAATCAGCAC
CGGAGAAGAAGGCCGCCTCCTC------TCCGGCCTCGAGCAATCACAGTAGCAGCTCCTCAGAGCCATGCAAGAACAGC
ACAGCTGCTGCAGCTTCTATCGAATGA-----------------------------------------------------
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>chr7D_1_TraesCS7D01G182900
ACCTGTAAATTTTCTACCGCATCCAGTACCTGTCCACGGATATGGATGTGGGAGGACACCATCCAACCGCAGCCGCATAC
ATTTCGAACCGCATTTTAACTAATTGAACAAAATTCACGCAAACCGGCCGATATTCATCAAAGTTTGGATAAAAAGAAGC
ACAAATCATCTATACGTAGCATACAAATAAGTCTAGTATAACAATGTCTCAAATTTGACTACATTAGCCAGATGTACAAC
AAGTTTTTCATCAACGGATCATGTCGTCCCATACATACTGCCCATTCAATTTCAT-AAACAGTGTGTGTACGTAAATAGC
CGGGCACCCCCATATCCGCCCCATATTTGA-GCTGGATATGAGGGATGTCTGTCAGTCCGCGCGTTTGAGGCGTCCGTCA
GGGTCAAAATTTCGTGACCTGCCAGTGACCGGGCCGTCTATCTGGACGTTTGAGGCAGGTTTGGGGTGCCCCAACTCTAA
GCTACCGAACTCTAGCTCCATATAAGATCTCAACATAGTTTTACCTTAATCCAGTATATTTTTAGTTAAAATATGTCCAA
AATGTAATGAATTTTGTATGGTTTATATGAATATCATCCGGTTTCAATGAAGTTTGTCCGGTTTGTCTAAAATTTTGAAT
TGTATGCTGGCAGTGTTGGATGCCCGTATCCCGCATCC-----------------GTGTCCGCGAACTGATAACTCTATC
CGTGGACGGATGCGGGAGAGAATTTGCATGTCAGCGTTGAAGATGCACTAACCTTGCCCATATTTGTAAGCTACCAAACT
CTAGCTTGATATAAGATTCTCAGGCTACAAAAAAAAGATACTATACGAGAGA-------------GAGAGAGAAGAGAAA
CCATTGATTCTCTCTTGGGCAACAAAGCCACTGTGCCACACTATAAAAGGCCACGGCTTCTTCTCCTCATCTGCCATAGC
CAACAAACAAGATCTACTAGTGCTACTACACTAGAAGCTGCTATAAGCAAAGAAGAGACAAGAAACAGGACCATGTACCA
CCATAACAGTGGCGAGGTTGCCAGCTTCCACTTCCTCCCGCCCCCAAACCCTTCCTCCTCCTTCACCACCCACCACCACA
TGAACATGGCCTTGCCCCCTCAAGCCTACTTCCCGCCCTCCTTCGATCCTGCCGCTCTACTCGCCGGTGACGACGACGTG
GCAGCAGCCTTTGAGTTTGACACCATCCTACTG---GAAGAAGCGGCTCACCTCGCCGGCGGCAATGGCTCGCCCAGCTC
GGGCTCCGACGCCGGTGGCGGAAACTACTGCCAGGTGGGCGGTGCTGGCACTGCAGTTGGCGCCGCGGAGGAGGAGAGGA
GGCGGCGGCGAATGGTCTCGAACCGGGAGTCGGCGCGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTGAGCGAGCTGTGG
GCGCAGGTCACGCACCTCCGCGGAGCCAACCGCCGCCTCCTCGACGAGCTCAACCGCGCATTGCGCGGGTGCGCCGACGC
CCGCCGCGAGAGCGCCAAGCTCAGGGACGAGAAGGCCAAACTGAATGAGAAGCTCGAGCAGCTGTTGCAGCAATCAGCAC
CGGAGAAGAAGGCCGCCTCCTC------TCCGGCCTCGAGCAATCACAGTAGCAGCTCCTCAGAGCCATGCAAGAACAGC
ACAGCTGCTGCAGCTTCTATCGAATGAAATGTTGTTTTTACTC----ATATTATCCACCCAAATTTTTAGAGGATAACTA
CTACTGTATCAATAA---GATTATAAGAGCATGTGTAACAAAAGAATGTTAAATAATTTATTTAATGGCCATGGCTGGGG
TCATGCATGCATGCACCCTGCAATCAGTTTCCCTATCAGGAATATGTTTTGTGTAACAGATTTTGGTACTTATCCTGTGT
TGATAAATTAACATGGATAGGATGTAGTG---------------------------------------------------
---------------------------------------------------------------CTATATATTTGCAAGTT
GC-AAGCTTGTGATGAATGAAACCAATAGAACAGTAGCAAGACCAAAGTATGAGAGTGAGAGATCAAGGAAGGATCAAAA
ACCGGTGAGAACGACAAGTGTTTAGCTTTCCATAATGCGG-TGAACTACAAAGGAAAAA-ATATAGTGCATTCCACCCTT
TTTAATGAAATTTAATGATTATAATTTCGAACCTTTTCCTCCACTTGATGATGTCATGAGCTCAACTTGTATGTAATGCT
TTGTGATTGCTAATGTATCGTCTACTTCGTTGATGTCGACTTACCTACCTATCAGCTGCTTTTCTTTGGCAGCTAAGTCT
CCC--AGCATGCTATAGTTTTTGCAATGTTGTATCGAACAAGGTTCGACATATGTATCTAGCAATTTTGGCATATGATTG
TAGCATCAATGCAAGATCTAACAACATATCCTATTCACTGAGATGCTTGTGGGTATATGTTCCCAAGAATCTTGAGCAAA
AGCACAGTAACATGTGCATGCATGCCGCAAAACAAATCTACGCATGCATGCTTT-TCACAA--TATATAAATTCCATTGC
CATGTGCATAGAC----GTGAATGTTTTGTTAATCCAGATGGAAAATGAGCTTCAGGAGTCGGATTTACAGCATGGAAAC
CTTCAAACACAGGACAAGTGGATTTGCCAAGTTAAAATGCCTAAAAACTAGGAGGAGGCATATTTGCTATTCAAATGGTT
GTGGAAAAGTGCAAGCAGAATCAGACACAAATTATTATTT
>chr7A_1
ACCTGCAAATTTTCTACCGCATCCAGGACCAGTCCACAGACATGGGTGTAGGAGGACGCCATCCAACCGCAGTCGCATAC
ATTTCGAACCGCATTTTAACTAACCGAACAAAATTCACACAAACCGGCCGATATTCATCGAAGTTTGGATAAAATGAAGC
ACAAATCATTCATATGTAGCATGCAAATAAGTCTAGTATAACAATGTCTTAAATTTGACTACATTAACCAGATGT---AC
AAGTTTTTCATCAACGGATCATGTCGTCGCATACATACTGCCCATTCAGTTTCATCAAACAGTGTGTGTACGTAAATAGC
CGGGCGTCCCCATATCCGCCCCATATTTTGGGCTGGATATGAGGGATGTCTGTCAGTCCGCGCATTTGAAGCGCCCGCCA
GGGTCAAAATTTCCTGACCTGCCAGTGACCGGGC-------------GTTTGAGGCGGGTTTGGACTGCCCGGACTCTAA
GCTACCGAACTCTAGCTCCATATAAGATCTCAGCATAGTTTTACCTTAATCCAATATATTCTTAGTTAAAATATGTCCAA
ACA-TAATGAATTTTGTCTGGTTTATATGAATATCATCCGGTTTCAATGAAGTTTGCCCGACTTGTCTAAAATTTTGAAT
TGTATGCTGGCAGCGTTGGATGCCCGTATCCCGCATCCACCCATATCCCGCATCTGTGTCCGCGAACTAATAACTCTATC
CGTGGACGGATGCGGGAAAGAATTTGCAGGTCAATGTTGAAGATGCACTAAGCTTGCCCATATTTGTAAGCTACCAAACT
CTAGCTCGATATAAGATTCTCAGGCTACAAAAAAAAGGATAATAT-----GA-------------GAGAGAGAAGAGAAA
CCATTGATTCTCTCTTGGGCAACAAAGCCACTGTGCCACACTATAAAAGGCCATGGCTTCTTCTCCTCGTCTGCCATAGC
CAAGAAACAAGATCTACTAGTGCTACTACACTAGAAGCTGCCATAAGCAAAGAAGAGACAATAAACAGGACCATGTACCA
CCATAACAATGGCGAGCTTGCCAGCTTCCACTTCCTCCCGCCCCCAAACCCTTCCTCCTCCTTCACCACTCACCACCACA
TGAACATGGCCTTGCCCCCTCAAGCCTACTTCCCGCCCTCCTTTGATCCTGCCGCTCTACTCGCCGACGTCGACGACGTG
GCAGCAGCCTTTGAGTTGGACGCTATCCTACTAGCAGAAGAAGCGGCTCACCTCGCCGGCGGCAATGGCTCGCCCAGCTC
GGGCTCCGACGCCGGTGGCGGAAGCTACCTCCAGGTGGGCGGTGCTGGCGCTGGAGTTGGCGCCGCGGAGGAGGAGAGGA
GGCGGCGGCGAATGGTCTCGAACCGGGAGTCCGCGCGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTGAGCGAGCTGTGG
GCGCAGGTCACGCACCTCCGCGGAGCCAACCGCCGCCTCCTCGACGAGCTCAACCGCGCATTGTGCGAGTGTGCCGGCGC
TCGCCGCGAGAGCGCCCAGCTCAGGGACGAGAAGGCCAAACTGAATGAGAAGCTCGAGCAGCTGCTACAGCAATCGGCAC
CGGAGAAGAAGGCC---------------------TCGAGCAATCACAGTGGCTGCTCCTCGGAGCCATGCAAGAACAGC
ACAGCTGCTGCAGCTTCTATCGAATGAAATGTTGTTTTTACTC----ATATTATCCACCCAAATTTTTAGAGGATAACTA
CTACTGTATCAATAATAAGATTATAAGAGCATGTGTTACTAAGCAATGATAAATAATT-ATTTAATGGCGATAGCTGGGG
TCATGCATGCATGCACCCTGCAACCAGTTTCCCTATCAGGAATATGTTTTGTGTAACAGATTTTGGTACTTATCCTGTGT
TGATAAATTAACATGGATAGGAGGATGTAGTGCTATATATTCGAGATAGCCGACCACCCATTTAGTAGTTATCTGAGAAA
AAATTAAAACCGGTAGTTTTTTGGAACCCTAGGCTGTAAAGTAGTAGTTTTATGCTATTTACTCTATATATTTGCAAGTT
GCAAAGCTTGTGATGAATGAAACCAATACAACAGTAGCAAGACCAAAGTATGAGAGTGAGAGATCAAGGAAGGATCAAAG
ACCGGTGAGGACGACAAGTGTTTGGCTTTCCATAATGCGGGTGGACTACAAGGGAAAAA-ATATAGTGCATTCCACCCTT
TTTAACGAAATTTAATGATTATAATTTTGAACTTTTTCCTCCACTTGATGATGTCATGAGCTCAACTTGTATGTAATGCT
TTGTGATTGCTAATGTATCGTCTACTTCGTTGATGCCGACTTACCTACCTACCAGCTGCTTTTCTTTGGCAGCTAAGTCG
CGC--AGCATGCTATAGTTTTTGCAATGTTGTATCGAACAAGGTTCGACATATGTATCTAACAATTTTGGCATATGATTG
TAGCATCAATGCAAGATCTAACAACATATCCTATTCACTGAGATGCTTGTGGG-ATATGTTCCCAAGAATCTTGAGCAAA
AGCACAGTAACATGTGCATGCATGCCCCAAAACAAATCTACGCATGCATGCTTTTCACAATAGTATATAAATTCCATTGC
CACGTGCATAAGC----GTGAATGTTTTGTTAATCGAAACGGAGAATGAACTTCAGGAGTTGGTATTACAGCATGGAAAC
CCTCAAGCACAGGACAAATGGATTTGCCAAGGGAAAA-------------------------------------------
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>chr7B_772
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----------------------------------------------------------------------CTACCGAACT
CTAGCTCCATATAAGATTCTCAGGCTACAAAAAAAAGGATGACAT-----GATACAGCCCAACATGAGAGAGAAGAGAAG
GCATTGTTTCTCTCTTGGGCAACAAAGGCACTGTGCCACACTATAAAAGGCCATGGCTTCTTCTCCTCGTCTGCCATAGC
CAACAAACAAGATCTACTAGTGCTACTACACTAGAAGCTGCCATAAGCAAAGAAGAGACAAGAAACAGGACCATGTACCA
CCATAACAATGGCGAGGTTGCCAGCTTCCACTTCCTCCCGCCCCCAAACCCTTCCTCCTCCTTCACCACCCACCACCACA
TGAACATGGCCTTGCCACCTCAAGCCTACTTCCCGCCCACCTTCGATCCTGCCGCTCTACTTGCCGGCGACGACGACGTG
GCAGCAGCCTTTGAGTTTGACGCTATCCTACTC---GAAGAAGCGGCTCACCTCGCCGGCGGCAATGGCTCGCCCAGCTC
GGGCTCCGACGCCGGTGGCGGGAACTACCTCCAGGTGGGCGGTCCTGGCGCTGGATTTGGCGCCGCAGAGGAGGAGAGGC
GGCGGCGGCGAATGGTCTCGAACCGGGAGTCGGCGCGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTGAGCGAGCTGTGG
GCGCAGGTCACCCACCTCCGCGGAGCCAACCGCCGCCTCCTCGACGAGCTCAACCGCGCATTGCGCGGGTGCGCCGACGC
CCGCCGCGAGAGCGCCCAGCTCAGGGACGAGAAGGCCAAACTGAATGAGAAGCTCGAGCAGCTGTTGCAGCAATCGGCAC
CGGAGAAGAAGGCCGCCTCCTCCTCCCCTCCGGCCTCGAGCAATCACAGTGGCCGCTCCTCGGAGCCATGCAAGAGCAGC
ACAGCTGCTGCAGCTTCTATCGAATGAAATGTTGTTTTTACTCATATATATTATCCACCCAAATTTTTAGAGGATAACTA
CTACTGTATCAATAATAAGATTATAAGAGCATGTGTTATTGAATAATGATAAATGA-TTATTTAATGGCGATGGCTGGGG
TCATGCATGCATGCACCCTGTAATCAGTTTCCCTATCAGGAATATGTTTTGTGTAACAGGTTTTGGTACTTATCCTGTGT
CGATAAATTAACATGGATAGGATGTAGTG---------------------------------------------------
---------------------------------------------------------------CTATATATTTGCAAGTT
GCAAAGCTTGTGATGAATGAAACCAATACAACAGTAGCAAGACCAAAGTATGAGAGTGAGAGATCAAGGAAGGATCAAAA
ACCGGTGAGAACGACAAGTGTTTAGCTTTCCATAATGCGGGTGAACTACAAGGGGAAAATATATAGTGCATTCCACTTTT
CTTTATGAAATTTAATGATTATTATTTTGAAATTTGCCTTCCACTTGATGATGTCATGAGTTCAACTTGTATGTAGTGCT
TTGTGATTGCTAATGTATCGTCTACTTCGTTGATGCCGACTTACGTACCTACCAGCTGCTTTTCTTGGGCAGCTAAGTCG
CCCATAGCATGCTATAG-TTTTGCAATGTTGTATCGAACAAGGTTCGACATATGTATCTAGCAATTTTGGCATATGAATG
TAGCATCAA-----GATCTCACAACATATCCTATTCACTGAGATGCTTGTGGG-ATATGTTCCCAAGAATCTTGAGCAAA
AGCACAGTAACATGTGCATGCATGCCGCAAAACAAATCTATGCATGCATGCTTTTTCACAA--TATATAAATTCCATTGC
CATGTGCATGCATAGGTGTGAATGTTTTGTTAATCCAAATGGACAATGAGCTTCAGGAGTTGGTATTGCAGCATGGAAAC
CTTCAAGCACAGGACAAGTGGATTTGCCAAGGGAAAATGCCTAAAAACTAGGAGGAGGCATATTGTCTATTCAAATGGTT
GTGGAAAA--------------------------------
>SNPs
-----S--------------------S---S------S--S----S---S-------S--------------S-------
-----------------------SS-------------S--------------------S--------------S-----
---------SS---S-------S--------------------------S----------------S--------SSS--
----------------------------S-------------------S-------------------------------
-----SS---------------------SS---------------------------------S-----S---S---S--
-------------S--------------------SSSSSSSSSSSSS---------S-------SS-----SS-------
--------------------------------S--------------------S------S-------------------
-SSS-------------S--------------------------------------S---SS------------------
-------------S------------------------------------------------------S-----------
-----------------S----------S----SS----------------S----------------------------
------S------------------------------SSSSSSSSSSSSS------------------------------
-----------------------------------------------------S--------------S-----------
-----------------------------------------S--------------------------------------
--------S-----------------------------------------------------------------------
-------------------------------------------------------------------S------------
---------------------S-S--------S-----------------------------------------------
----------------------------SS-------------------S---S--------------------------
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----------------S----------------------------------------------------------S----
--------------------------------------------------S--S-------S------------------
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------------------------------------S--S---S----S--------------------S----------
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----------------------------S---------------------------------------------------
---------------------------------------------------S----------------------------
---------------------------S----S-----------------------------------------------
-----------------------------------S---------------S---------------------------S
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-----------------------------------------------------S--------------------------
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----------S--------------------------S-----S----------------S--SS---------------
------S------------------------SS-------------------------------SS--------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_41
---------------------TCCAGTACCTGTCCACGGAT---------------------------------------
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>reverse_1662
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-------------------------------------------------------------AGAGCCATGCAAGAACAGC
A-------------------------------------------------------------------------------
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>forward_1651
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-------------------------------GGCCTCGAGCAATCACAGTA-----------------------------
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>reverse_2809
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--------GTGCAAGCAGAATCAGACACA-----------
