>input_sequence_72323
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------------------------------------------------------------------------ATGGCATC
GGCTAGCTCAGTGGTGCT------GCTGTTGATCGCGGCGGCCCTCACCGC---GGCGGCGCCGGGCGTGCTCTCGGACC
CGCCGCCGCTGCAGGACTTCTGCGTGGCCGACCTGAAGGCCGCCACGGCGGTGGACGGGTTCCCCTGCAAGGCGGCGTCG
ACGGTGGCGGACGACGACTTCTTCTCCGACGCCATGGTGGCCGCGCCCCGCACCGACACCAACCCCTTCGGCGTCAACTC
CACGCGCGCCACCGTGTCGGCCTTCCCGGGCCTCAACACGCTGGGGCTGTCCATCACGCGCACCGACCTCGCCCCGGGCG
GGCTAAACCCGCCGCACTCGCACCCGCGCGGCTCCGAGCTCGTGCTGGTGCTCAAGGGCGAGGTCATGGTCGGGTTCACG
TCGGCCGCGAATCGGCTATACTCCAAGGTCGTGAAGAAGAACGAGCTCTACGTCGTGCCCCGCGGCCTGCAGCACTTCCA
GCTCAACGTCGGCAAGGGGGACGCCGTGTTCATGGCCATGTTCGACGCCCAGTCGCCCGGCCTGGTCACGCCCACCCTCG
GGCTCTTCGCCACCAAGCCGGCCATGCCCATGGAGGTGCTCACCAAGACCTTCCTCGCGGGCGAAGACGAAGTCAGCGCC
ATGAAATCGAAATTCGCCGGCTTCTGA-----------------------------------------------------
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------------------------------------------------------------------------
>chr2A_1_TraesCS2A01G109200
GGGTATTTAGAAAACTTTCCTCCGTGCCAACCGCGTTCACTAGTAAGGTAAAGATTGAGGCTAATCTTTGGGGTTTGACC
CGAGCTAAGAATTTGAGATATTTGGCGCCGCGATAGTAGTCTTATTGTCCCTGGCCGTTTACCGGTCACTTTTGCAAAGC
TTTTGTCTGCTTTCAGAAAAACTGCAAATCGAAGAGGTCCCGAAGAACAGAACCAGGGAACAAGAGTAATGACATGAAGC
ATACATAGATAGCGCGAGCCGCTAGCCAACCTAAGGTTGTGGTTAGGAGGACAGTGGTATTTTCAACCCATCAGAGTTCA
AGTCCTAGACTCGACACTGATGCTCGCACTATTTCTGTATTTGTTCAGGCATTTCGACAATGTGCCTTCAGTGGGAGGAT
GTCAATTTCAAGATGATGTGTCGGCTCAGTCTTTCGAAGATGCTCATAGGTGTAGATTGTGCGTGCGTACGTTCATAGAG
GTAAGTATATATGCGTATGTATGAGCTTTTGC--GTGTGTACTGTGTTAAAAAGAATAGCCGAGCTCAAAGTCGGAATTG
GCTGGGCAGTATTATTGAAGAGCACCGCACCCATGC--------------------------------------------
-----------------------GCGGATGGGCATTTTCTCAGCTAG----GTGAGGTGCGCGCGCGTCCAGCTATTTGG
TACACACAAACACCACAACCCGTCGCTGCCGGAAATCCGACTCCCAT-CCGAGGCCAAATGGTGCCGTAATCTCAACAGC
GACAGCCCCTT--------------------CTCACCGGCTGTCATGCACGCACTTTACGACCCAGTAAACCGCCGGCAA
CGGCCTCCGTCAATCGGTGGCATCCTCGTCAACTCCACCCGTGCAATGCAATGGCGCTTGCGCTCGCGCTCGCGCTCTAT
TTATAGTGAACGAACCGCGGGACAATGGCACC---ACCAAG---AACACACTGCGATTCCACGGAAGCAAACACCAGGCG
AGCAGTTTGTCGTGCAAGCTGCGA------ACGAGCCTACGATCGATA------CTTCCGTAGGGCTGATCGATGGCATC
GGCTAGCTCAGTGGTGCT------GCTGTTGATCGCGGCGGCCCTCACCGC---GGCGGCGCCGGGCGTGCTCTCGGACC
CGCCGCCGCTGCAGGACTTCTGCGTGGCCGACCTGAAGGCCGCCACGGCGGTGGACGGGTTCCCCTGCAAGGCGGCGTCG
ACGGTGGCGGACGACGACTTCTTCTCCGACGCCATGGTGGCCGCGCCCCGCACCGACACCAACCCCTTCGGCGTCAACTC
CACGCGCGCCACCGTGTCGGCCTTCCCGGGCCTCAACACGCTGGGGCTGTCCATCACGCGCACCGACCTCGCCCCGGGCG
GGCTAAACCCGCCGCACTCGCACCCGCGCGGCTCCGAGCTCGTGCTGGTGCTCAAGGGCGAGGTCATGGTCGGGTTCACG
TCGGCCGCGAATCGGCTATACTCCAAGGTCGTGAAGAAGAACGAGCTCTACGTCGTGCCCCGCGGCCTGCAGCACTTCCA
GCTCAACGTCGGCAAGGGGGACGCCGTGTTCATGGCCATGTTCGACGCCCAGTCGCCCGGCCTGGTCACGCCCACCCTCG
GGCTCTTCGCCACCAAGCCGGCCATGCCCATGGAGGTGCTCACCAAGACCTTCCTCGCGGGCGAAGACGAAGTCAGCGCC
ATGAAATCGAAATTCGCCGGCTTCTGATCGTGAAACACAAGTGCTCTTGTAGCAGTTCAGCTGCTAAATTGATTTTTTTG
CGTG--TGTGTGTGTGTGAGTATTCGTTCGTTTTCTATCAAATAATAACAATTGTATTGATATTGT---ATTATACTCCC
TCTGTCCTGTGATATTATAAGATGTTTATTATACTTGTTCGTTCTTGTGCCTGTTACTTCATCCGATGCATAAAAAGTAC
CACAGTTTTAAATTGAGATTAAACTAAACTTAGTTCAAAAGTGCAAAACTTATTTTGGATTGATGGGAGTAGCTATAAAC
AAATGTAAGACATAGAATAAAAAATAGCTATAAATTAACCTATAATAAAAAAAATAGAATTTATGTTTACATTTTTGTCA
TACATGAACGATATTAGACCTATCAGCAAACGAATGGTGAGTACTCTCTCTGTAAACAAATGTAAGACGTTTGATAGAAT
ACTTATTTTATAGCACCTATTGACATTCTGACTATAGTGAAACTATTTATTGATGAAATAATGATGAAGATAGTTATGTA
GCAGCCTTGTACGTAACCTGGCCATGGGCAACCCGGCCCAGATGGCTTGACCCGACCCGGCCAAAAATCCTAGGCCAGGC
CAGGCTTGTGCATGCCATTGGGCCGGGCTCGGGCCTAGAAATTGAGTCCGACAGGTAGATAGGGTCAGGTTTGGGCTTGC
GTAAAAACAGATTTCAACCGTGGTCGGGTTGGGCCGACCAGGCCATGTCAGGAGTTTTCAGGCTCGGGCCCAATTTATTA
GGCCTGGCGGTCGGGCTAGGCCGGGCTCAGGTGTAGGTTTTCAGCACCGGGCTTTTTTCGGCCCAGCCCGGCCCGACATA
TGGCCAGGTATACTTGTATGTGCTAAAATTGGATCACCAATTTAATTACATGAGATGATATATCGGTGATTGCTGCAGGA
ATTGGTTCAATATAATTCAATGTGGTTGTAAGGAACATTTTGAATAATAATATGAAAAGTAAGGCTAAAAAT
>chr2D_371
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--------------------------------------------------ATTTTGACAATGCG--TTCAGTGGGAAGAT
GTCAATCTCAAGATGATGTATCGGCTAAGTCTTTCAGAGATGCTCATAGGTGTAGGTTGTACGTGCGT--GTTCATAGAG
GTGAGTGTAGGTGCGTATGTATGAGCTTCTGCGTGTGTGTACTGTGTTAAAAAGAATAGCCGAGCTCAAAGTCGGAATTG
GTTGGGCTGTACTACCGAACAGCGCAGTTCCTGTAGCTAGCGCATCACAAATGGAAGCAGCAGAGGTCGCCGCAGCTTGA
ACCGAAGAGCACCGCAAATGGATGCGGATGGGCATTTTGGCAGCTAGGTGAGTGAGGTGCGCGCGCGTCCAGCTATTTGG
CG--CACAAACGCCAGAACCCGTCGCTGCCGGAAATCTGACTCCCAACCCGAGGCCAAATGGTGCCCTGATCTCGACAGC
GACAACCCCTTCTGCGCGTCATCATCGGTTCCTCACTGTCTGTCATGCACGCACTTTAGGACCCAGTAAACCGCCGGCAA
CA----------ATCAGT--CATCCTCGTCAACTCCACCCGTGCAACGCAATATGGT-----------------CTCTAT
TTATAGCGAACGAACCGCCGGACAATGGCACC---ACCAAGATCAGCACACTGCGATTCCACGGAGCCAAACACCAGG--
---GAAGAGCAGTTGCAGCTCGTGTAAGCTA----------------------------------CTGACCGATGGCATC
GGCGCGCTCCATGATGCTCCAGGCGCTGTTGATCGCGGCGGCCCTCGTCGC---GGCGGCGCCGCGCGTGCTCTCGGACC
CGCCGCCGCTGCAGGACTTCTGCGTGGCCGACCTGAAGGCCGCCACGGCGGTCGACGGGTTCCCCTGCAAGGCGCCGTCG
ACGGTGGCGGACGACGACTTCTTCTCCGACGCCATGGTCGCCGCGCCCCGCACCGACACCAACCCCTTCGGCGTCAACTC
CACGCGCGCCACCGTGTCGGCCTTCCCGGGCCTCAACACGCTGGGGCTGTCCATCACGCGCACCGACCTCGCCCCGGGCG
GGCTCAACCCGCCGCACTCGCACCCGCGCGGCTCCGAGCTCGTGCTGGTGCTCGAGGGCGAGGTCATGGTCGGGTTCACG
TCCGCGGCCAACCGGCTCTACTCCAAGGTGGTGAAGAAGAACGAGCTCTACGTGGTGCCACGCGGCCTGCAGCATTTCCA
GCTCAACGTCGGCAAGGGGGACGCCGTGTTCATGGCCATGTTCGACGCCCAGTCGCCCGGCCTGGTCACGCCCACCCTCG
GGCTCTTCGCCGCCAAGCCGGCCATGTCCATGGAGGTGCTCACCAAGACCTTCCTCATGGGCGAAGACGAAGTCAGCGCC
ATGAAATCGAAATTCGCCGGCTTCTGATCGTGAAACACAAGTGCTCTTGTAGCAGTTCAGCTGCTAAATTGATTCTTTTG
CGTGCGTGCGTGCGTGTGAGTATTCGTTCGTTTTTTATTAAATAAA---AATTGTATTGTTATTGTAATATTATACTCCC
TCTGTCCCATGA---TATAAGATGTTTATCATACTT---CGCTCTTGTGCCTCTTACTCCATCCGATCCCAAAAAGTGGC
GCG-GTTTTAAATTATGATTGAAATAAACTTAGTTCAAAACTACGACACTTATTTTGAATCGGGGGAAGTAGCTAATATC
TCATATGAATTTATATAAAA---------ATAAATTTACCTATAATAAAAT---TAGAATTTATGATAACATTTTTGCCA
TACATGAACGGTATTAGACCTATCAGCAAACGAATGGTGACTACTCTCT--GTAAACAAATATAAGACGTTTGATAGAAT
ACTTGTTATAGC--------------------------------------------------------------------
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>chr3A_731
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----GCCCGTT--------------------ATCACTGGCTGCCATGCACGCACTTTACGACCCAGTAAACCGCCTGCAA
CAGCATCGGTCAATCAGT--CATC------------ACCCGTGCATCCGGATGCTGCGTTCA-------TCGCGATCTAT
TTATAGTGAACGAGCTGCACCACAATGTCACC---ACCAAG---ATCACATTGCCATTCCACAGAACCAAACACCAGGCC
-GGGA---------GCAACTCGCGTA----------------------------------------------ATGGCATC
GGCTCGCTCCGTGATGCTCCACGTGCTGCTGCTCGCGCTGGCCC---TCGC---CGCGGCGCCGGCCGTCCTCTCGGACC
CGCCGCCGCTCCAGGACTTCTGCGTGGCCGACCTCAAGGCCGCCACGGCGGTCGACGGGTTCCCTTGCAAGGCGCCGTCG
ACGGTGGAGGACGACGACTTCTTCTCCGACGCCATGGTCGCCGCGCCCAGAACCGACACCAACCCCTTCGGCGTCAACTC
CACGCGCGCCACCGTGTCGGTCTTCCCGGGCCTCAACACGCTGGGCCTCTCCATCACGCGCACCGACCTCGCCGTGGGCG
GCCTCAACCCGCCGCACTCGCACCCTCGCGGCTCCGAGCTCGTGCTGGTGCTCAAGGGCGAGGTCATGGTCGGCTTCACC
TCGGCGACCAACCGGCTCTTCACCAAGGTGGTGAAGGAGAACGAGCTCTACGTCGTGCCCCGCGGCCTGCAGCACTACCA
GCTCAACGTTGGCACCGGCGACGCCGTGTTCATGGCCATGTTCGACGCCCAGTCGCCGGGCCTGGTCACGCCCACGCTCG
CGCTCTTCGCGACCGAGCCGGCCATGCCCATGGAGGTGCTCACCAAGACCTTCCTCATGGGCGAAGATGATGTCACCGCC
ATGAAATCCAAATTCGCCGGCTTCTGA-----------------------------------------------------
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------------------------------------------------------------------------
>chr3B_738
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-------------------------------CTCACTGGCTGCCATGCACGCACTTTACGACCCAGTAAACCGCCTGCAA
CAGCATCGGTCAATCAAT--CATTC------------CCCGTGCATCTGGATGCTGCGTTCA-------TCGCGATCTAT
TTATAGTGAACGAGCTGCACGACAATGTCACC---ACCAAG---ATCACATTGCCATTCCACGGAACCAAACACCAGGCC
GGGGA---------GCAACTCGCGTAAGCTACGAGCCTAGGATCGATATACGTACGCACGC--------CTGATGGCATC
GGCTCGCGACGTGATGCTCCACGTGCTGCTGCTCGCGGTGGCCC---TCGC---CGCGGCGCCCGGCGTCCTCTCGGACC
CGCCACCGCTCCAGGACTTCTGCGTGGCCGACCTCAAGGCCGCCACGGCGGTCGACGGGTTCCCCTGCAAGGCGCCGTCG
ACGGTGGAGGACGACGACTTCTTCTCCGACGCCATGGTCGCCGCGCCCAGAACCGACACCAACCCCTTCGGCGTCAACTC
CACGCGCGCCACCGTGTCGGTCTTCCCGGGCCTGAACACGCTGGGCCTCTCCATCACGCGCACCGACCTCGCCGTGGGCG
GCCTCAACCCGCCGCACTCGCACCCTCGCGGCTCGGAGCTCGTGCTGGTGCTCAAGGGCGAGGTCATGGTCGGGTTCACC
TCGGCGACCAACCGGCTCTTCACCAAGGTGGTGAAGGAGAACGAGCTCTACGTCGTGCCCCGCGGCCTCCAGCACTACCA
GCTCAACGTTGGCACCGGGGACGCCGTGTTCATGGCCATGTTCGACGCCCAGTCGCCGGGCCTTGTCACGCCCACGCTCG
CGCTCTTCGCGACCGAGCCGGCCATGCCGATGGAGGTGCTCACCAAGACCTTCCTCATGGGCGAAGATGATGTCACCACC
ATGAAATCCAAATTCGCCGGCTTCTGA-----------------------------------------------------
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>chr3D_754
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-----------------------------------------------CACGCACTTTACGACCCAGTAAACCGCCTGCAA
CAGCATCGGTCAATCAGT--CATC------------ACCCCGTG----------------CA-------TCGCGATCTAT
TTATACTGAACGAGCTGCACGACAATGTCACCACTACCAAG---AGCACGTTGCCATTCCACGGAACCAAACACCAGG--
---GA---------GCAACT-----------CGAGCCTAGGATCGATA------CGTACGC--------CTGATGGCATC
GGCTCGCTCCGCGATGCTCCAGGCGCTGCTGCTCGCGGTGGCCC---TCGC---CGCGGCGCCGGGCGTCCTCTCGGACC
CGCCGCCGCTCCAGGACTTCTGCGTAGCCGACCTCAAGGCCGCCACGGCGGTGGACGGGTTCCCCTGCAAGGCGCCGTCG
ACGGTGGTGGACGACGACTTCTTCTCCGACGCCATGGTCGCCGCGCCCAGAACCGACACCAACCCCTTCGGCGTCAACTC
CACGCGCGCCACCGTGTCGGTCTTCCCGGGCCTCAACACGCTGGGCCTCTCCATCACGCGCACCGACCTCGCCGTGGGCG
GCCTCAATCCGCCGCACTCGCACCCTCGCGGCTCGGAGCTCGTGCTGGTGCTCAAGGGCGAGGTCATGGTCGGGTTCACC
TCGGCGACCAACCGGCTCTTCACCAAGGTGGTGAAGGAGAACGAGCTCTACGTCGTGCCCCGCGGCCTGCAGCACTACCA
GCTCAACGTTGGTACCGGGGACGCCGTGTTCATGGCCATGTTCGACGCCCAGTCGCCGGGCCTGGTCACGCCGACGCTCG
CGCTCTTCGCGACCGAGCCGGCCATGCCGATGGAGGTGCTCACCAAGACCTTCCTCATGGGCGAAGATGATGTCACCGCC
ATGAAATCCAAATTCGCCGGCTTCTGA-----------------------------------------------------
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>chr2B_1027
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------------------------GCTGCTGGTCGCGGCGGCCC---TTGCTGTGGCGGCGCCGCGCATGCTCTCGGACC
CGCTGCCGCTCCAGGACCTCTACGTAGCCAACCTGAAGGCCGCCACAGCGGTCAACGGGTTCCCTTGCAAGGCGCTGTCG
ACGGTGGCGGATGACGACTTCTTCTCCAACACCATGGTCACCGCGCCCCGCACTGACACCAACCCCTTTAGCGTCAACTC
CACACACGCCACTGTGTCAGTCTTCCCGGGCCTCAACACGCTGGGGCTCTCCATCACGCGCATCGACCTCGCCCCGGGCG
GCCTCAACCCGCCGCACTCGCACCCGCGCGGCTCCGAGCTCGTGCTGGTGCTCAAGGGTGAGGTCATGGTCGGGTTCACG
TCCGCGGACAACCGACTCTACTCCAAGGTTGTGAAGAAGAACGAGCTCTACGTCGTGCCCCACGGCCTGCAGCATTTCCA
GCTCAGCGTCGGCAAGGGGGACGCCGTGTTCATGGCCATGTTCGACGCCCAATCGCCGGGATTTGTCATGCCCACCCTCG
GGCTCTTCGCCAGCAAGCCGGCCATGCCCATGGAGGTGCTCACCAAGACCTTCCTCATGGGCTAAGACAAAGTGACCGCC
ATGAAATCGAAATTCGCCGGTTTCTGATCTTGAAA-ACAAGTGCTCTTGTAGCAGTCCAGCTACTAAATTGAT-------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------S-SS----------S---
------S------------S------S--------SS------------------S----S-------SS----------
--S---S--SS-----------------S---------------------------------------------------
-S-----S---S--SS---S---S-S-SS--SS-SS--------------------------------------------
--------------------------------------SS----------------------------------------
SSSS-------S---S---------------------S--------S-------------------S-S-----S-----
------------------------------------S-------------------------------------------
-S--S--S-------S--SS--------------------------S------SS--S-S-SSSSSSSS-----------
------------------S--------------------------S--------------------S------------S
S-SSSSSS-SS--SSS----SSSS---------------S---------------S-S--SSSSS----S----------
----S----S---S--------------------------------SS--------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------S-----------------------------------------
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----S---------------------------------------------------------------------------
-----S--S--S-----S-----------S--------------------------------------------------
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--------------------------------------------------------SS----------------------
--------------------------------------------------------------------------S-----
--------S---S---------------------S---S------SSSS----------S--------------------
-------SS---SSS--------------S------SSS--S----------S-----S--------S-SS----SSSS-
SSSS----------SS----S--S----------------S-S-S-S----------S--S-SS--S--------SS-S-
SS--S-S-SSSSSSSS-S--SSSSSSSSS-------S-------------SSSS-----------S-S---------S--
----------S-----------------------------S--------SS----------S------------------
----S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_115
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---------------AGATATTTGGCGCCGCGATA---------------------------------------------
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>reverse_1526
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-----CGCGAATCGGCTATACTCCA-------------------------------------------------------
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>forward_437
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-----------------GTGTCGGCTCAGTCTTTCGA-------------------------------------------
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>reverse_2375
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------------------------------------------------------ACCCGGCCAAAAATCCTAGG------
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