>input_sequence_72321
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------------------------------------------------ATGGAGGCCTCGCCGTCTCGCAGCGACAGCTT
CTCCCGCGCGTGGCTCGGCTGCAGGGCGTCCATTGAGCGGCT------CGACGCCGACGCTGGCCTCGGGTGCTCGTTCA
ACAGCTCCACGTCCTTCATCGATATGGACCCCGCGGAGCTCTTCTCCATGCGGTGGACGTCCTCCGCCGCAGTGCCGGCG
GATGATGACGAGGAGGCTGCCGAGTTCGACTTTGGCCAGCTGACGTGCGCCGGCGCGCAGTGCTTCTCCCCGCTGCTCGT
CGGCGCCGGACAGCCCCTCCTCCCGTGCGAGCCTGGCGTCGTGTCCT------------ACGTGTCGTCCCCCGCTTTCT
ACTCCGCGCAGAGCACGCCGGCCTCCGCGGTCAGCTCGCGCCGTCGTGGCCGGCAC------GCGCCGCTGGTGGCGACG
CGGAGGATACTGCTGAGGTACCTGCGCCTCCTGGCGCCGCTGTGCCGGAAGGTGAGGGCGCTGCCGGTGCGGGCGCTCGC
GCCGCGGTCGTCGTCCAGGGCTGCTGCCTTCGCCGCGGCGACGTCGTCCCCGGCGCGGCAGTCCACGTCCAGCTACGCGA
GCGCCACGGAGTACTGGTGCCACGGCCACGCCGACACCGCCGTCAGCGACGCCATCCTCTACTGCAAGAAATCCATCCAG
GGACGACAGGA---CGTGTAG-----------------------------------------------------------
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>chr1B_1_TraesCS1B01G205500
TGGTCTGAAAACATTGAGCATTGTTCCATGTAGATTCTGGAA----CTAGCTCGAGCGCATATGGCAACATGATAGGGAG
ATG-----CTCTCTGCGGGAACACTCTTTTGTCCCGATTACCTCACCCACCCGACTAATCCCCTATCATTGCTGGCTGCA
TCCATGAGCTTGTCTTTGACAGGTCTTTTGGGACTGAATATTGGAGATAA----CATTTTGTTATTTGTCTTTCCCACTG
CAAGGTCTACAGCACGACAAGTGTCAGTAGAGAGT-----AGTACATGACACGCAAATATAAGATGTTCTAACTTT-TTT
CTAAATCAGATGTATATTGTCACGTTTTAGTGTATTTCAGTTTGTATGTACTCCCTGTAAGATGATTTTTGACACTACAC
TAGTGTCAAAAAACGTCTTATATTATGGGACAGAGGGAGTAGTTTATATTGAGGTACTATC---AGAAACATCTTATATT
TGTGAACGGATGTAGGGTAACACGATTTGCGAATATGATTCCGTTTGACGAAATTTAGAGCAACCTACGTGTGACACGTC
CTCACAGTTCGGTCGGCGTGTAGTTTCAGATGATGCAAATGCGAATGA---T---CATCATTTTGAC-------------
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----------------------------CTATATCCACTGTA---CGACACAAAATGTACAGTATAATTCTCGAGCATAT
TTGGATGGAATTTTGCAATGGC-AACAGTCTGCTCTGTGCCCTGGAACAGTGAAAAGTAC---TCCTACATGGTGTGGAA
TTGCAAGCCTTTTTTAGCCTCTGCATTGGAACAGAAAAAGAAGGGGACACGGCACCAAACGCCTCGCTTCAGAGACGTCA
ACTGGTCTGTTTGTTTCTTCTCTTTTCC--CACAGCCA-CCTCCTCGCCCGCCTCTATATTATCTTCCTCGTGGCGCCAC
TCACTT-CCGCGCTCGCCTCGGTTCACACGCAGCTACGTACCTCTGAGTCCTCACTCACGCGCA--------CACTGATC
CAAGCCTCTCTCTCGCTATACCTCGCGCACCGTCAACCAACCGCGTCTATGGAGGCCTCGCCGTCTCGCAGCGACAGCTT
CTCCCGCGCGTGGCTCGGCTGCAGGGCGTCCATTGAGCGGCT------CGACGCCGACGCTGGCCTCGGGTGCTCGTTCA
ACAGCTCCACGTCCTTCATCGATATGGACCCCGCGGAGCTCTTCTCCATGCGGTGGACGTCCTCCGCCGCAGTGCCGGCG
GATGATGACGAGGAGGCTGCCGAGTTCGACTTTGGCCAGCTGACGTGCGCCGGCGCGCAGTGCTTCTCCCCGCTGCTCGT
CGGCGCCGGACAGCCCCTCCTCCCGTGCGAGCCTGGCGTCGTGTCCT------------ACGTGTCGTCCCCCGCTTTCT
ACTCCGCGCAGAGCACGCCGGCCTCCGCGGTCAGCTCGCGCCGTCGTGGCCGGCAC------GCGCCGCTGGTGGCGACG
CGGAGGATACTGCTGAGGTACCTGCGCCTCCTGGCGCCGCTGTGCCGGAAGGTGAGGGCGCTGCCGGTGCGGGCGCTCGC
GCCGCGGTCGTCGTCCAGGGCTGCTGCCTTCGCCGCGGCGACGTCGTCCCCGGCGCGGCAGTCCACGTCCAGCTACGCGA
GCGCCACGGAGTACTGGTGCCACGGCCACGCCGACACCGCCGTCAGCGACGCCATCCTCTACTGCAAGAAATCCATCCAG
GGACGACAGGA---CGTGTAGGCAGGACGAGCGCTCCGCTCTGGCATAGATCGGTTGCTGCTCTTTTGGGATTTTGAT--
--TTCCGGTGTACATCCGATTTGCATACGACACTTGAGTGTATAGCGTATACGTTATGAACTG---AAGTATGAGCTGTG
CTCCAAGGTGGTTTAACCTTGTGAAGCATTTTGAACAAGC----ACGTTAACCTTGTGATGAAGCTACCTGTCACTGTTA
CTGTGCTCGTTGC----------TAAGGACGAGATTCGGTCCAAAGGAAATTGTTAACGAAGATACGCACTTCTGTCCTC
TCCTTCTAATTGCCATGATTATGTGCGTACTATATATGT--------ATGCATGCGTCAGGCCAGATAGACCCCATACGT
TAGGTCAACAAACATCGACTTA-----TTGATTATTGTGATTCGTTTGAGCAAACTCATGTGTTTTCCCCGGCAAGGCAC
ATTA----CTAAAACTCATTCAAACCTA---TAGGCAGCTGAGATCGATGAGGTCAAGCCGAACGACCATGTCCAAGTCG
CCGAGTCAAACATATACTCTCTCCGTCCGAAAATACTTGTCATCAAAATGGATAAAAAGAGATGTATCTAGAACTAAAAT
AAGTATAGATACATTCCCTTTTATCCATTTTGATGACAAGTATTTCCGGCGGAGGGAGTATATAGCTGCACAGTTGATTC
ATTATCTTCTAGGTCGTCCAGTCAGCCAGGGTAAGACGTA-------------------AGAGACATGTAGACCGTTCCA
TACGGACAATACGATGCAATCTTCCAAATGC---------ATGACAGTAGATACGCACAGGGCATGGAACT--CAGATTA
AGATCATTTGTAGTGCTCTACTATACGCAGGATTGGAATCATCCTGGCATGCAATTTTCTTTTTTCTTTTTGAGAAACAT
CTTGGCATGCAATTAGGCGGGAGAGG--GAGAGAGAGAGGATATCCGACATGGACCGTTCACCGCCCATACATGGGCTAC
CCCTCCCGACATGCACCGGCCGCGGCCGGGACCAGAGACCGGAGCCAATAATGT
>chr1A_1
TGGTCTGAAAACATTGAGCATTGTTCCATGTAGATTCTGGAACTAGCTAGCTCGACCGCATATGGCAACATGTTAGGGAG
ATGCTCTCCTCTCTGCGGGAACACTCTTTTGTCCCGATTACCTCACCCACCCGACTAATCCCCTATTATTGCTGGCTGCA
TCCAAGAGCTTGTCTTTGACAGGTCTTTTGGGACTGAAATA--GATATAACATTCATTTTGTTATTTGTCTTTCCCACTG
CAAGGTCTGCAGCACGACAAGTGTCAACACAGAGTAGTACAGTACATGGCACACAAATGTAAGATGTTCTAACTTTTTTT
CTAAATCGGATGTATATCGTCATGTTTTAGTGTATTTGTTCACTCATTTTGATCCGTAT---------------------
--------------------------------------GCAGTTTATATTGAAA---TATTATTAAAAACATCTTATATT
TGTGAGCGGAGGTAGGGTAACAGGATTTGCAAAT------------GACGAAATTTAGAGCAACCTACGTGTGACACGTC
CTTACAGTTTGGTCGGTGTGTAGTTTTAGATGATGCAAATGCGAATGA---TGATCATCACTTTGGCCCCGTTTGGATCA
TGGGGTTAGAGCTAGTTTGGGTTAGTTGGAGGCTCAAATAATCCAAAAGTATCCAAACAGGGAGGGTTAGAGTGGGTTAG
TTCTATCTAACCCAACTATCCCGATGGAGAGGTGCTTATTTGGGTTAGAGTGGGTTAGAAAATAACTCTAACTCTAACTG
TGTTAGAGTATCCAAACAGGGCCAAGGTCTATATCCACTGTAGTACGATGCAAAATGTACAGTATAATTCTCGAGCATAT
TTGGATGAAATTTTGCAAAGGC-AACAGTCTGCTCCGTGCCCTGGAACAGTGAAAGGCAC---TCCTACATGGTGTGGAA
TTGCAGGCCTTTTTTAGCCTCTCCGTTGGAACAGAAAAAGAAGGGGACACGGCACCAAACGCCTCGTTTCAGAGACGTCA
ACCGGTCTGCTTGTTTCTTCTCTTTTCCCACACAGCCACCCCCCTCGCCCGCCCTTATATTATCTTCCTCGCCGGGCCAC
TCACTTCCCGCGCTCGCCTCGGTTCCCACGCACGCAGCTACCTCTGAGTCCTCACTCACGCGCA--------CACTGATC
CAAGCCTCTC----------CCTCGCGCACCGTCAACTAGGTGCGTCTATGGAGGCCTCGCCGTCTCGCAGCGACAGCTT
CTCCCGCGCGTGGCTGGGCTGCAGGGCGTCCATCGAGCGTCTCGACGCCGACGCCGACGCTGGGCTCGGGTGCTCCTTCA
ACAGCTCCACGCCCTTCATCGACATGGACCCCGCGGAGCTCTTCTCCATGCGGTGGACGTCCTCCGCCGCAGCGCCGGCG
GACGATGACGAGGAGGCTGCCGAGTTCGACTTTGGCCAGCTGACGTGCGCCGGCGCGCAGTGCTTCTCCCCGCTGCTCGT
CGGCGCCGGACAGCCCCTCCTCCCGTACGAGCCGAGCATCGTGTCCTACTCCTACACCAACGCGTCGTCGCCTGCTTTCT
ACTCCGCGCAGAGCACGCCGGCCTCCGCGGCCAGCTCGCGCCGTCGTGGCCAGCACGCGCCAGCGCCGCTGGTGGCGACG
CGGAGGATACTGCTCCGGTACCTGCGCCTCCTGGCGCCGCTGTGCCGGAAGGTGAGGGCGCTGCCGGTGCGTGCGCTCGC
GCCGCGGTCGTCGTCCAGGGCTGCCGCCTCCGCCGCGGCGACGTCGTCCCCGGCGCGGCAGTCCACGTCCAGCTACGTGA
GCGCCACGGAGTACTGGTGCCACGGCCACGCCGACACCGCCGTCAGCGACGCCATCCTCTACTGCAAGAAATCCATCCAG
GGACGGCAGGATGCCGTGTAGGCCGGCAAAAA-------------------------------------------GATCG
GCTTCTAGTGTACATCCTATATGCATATGGCACTTGAGTGTATAGCGTATACGTTATGAAGAAAGTATGATGAAG-TGTG
CTCCAAGGTGGTTTAACCTTGTGAAGCATTTTGAACAAGCACGTACGTTAACCTTGTGATGAAGCTACCCGTCACTGTCA
CTGTGCCCATTGC----------TAAGGACGAGATTCGGTTCAAAGGAAATTGTTAAGGAAGATACGCACTTCTGTCCTC
CCCTTCTAATTGCCATGATTATGTGCGTATTATATATGTTAATATGTATGCATGCATCAGGGCAGACAGACCCCATGCGT
TAGGTCAACAAACATCAACTTAATTACTTGATTATTGTGATTCGTTTGAGCAAACTCATGTGTTTGCCCC-----GGCAA
GACGCATTACTAAACTCATTCAAACCAGCTGTAGGCTGCTGATATCGATCAGGTCAAGCCGAACGACCATGTCCAAGTCG
CCGAGTCAAAC---------------------------------------------------------------------
-----------------------------------------------------------ATATAGCTGCACAGTTGATTC
GTTATCTTCTAGGTCGTCCAGTCAGCCAGGGTAAGACGTACTCCAGTCAGCCAGGAGTAAGAGACATGTAGACCGTTCCA
TACGGACAATACGGTGCAATCTATCTCTGCAATCTTCCAAATGACAGTAGATACGCACAGG-CATCGAACTTGCAGAGTA
ATATCATTG-----------------------------------------------------------------------
--TGGCATGCAATTAGGCGGGAGAGAGAGAGAGAGAGAGGATACCCGACATGGACCGTTCACCGACCATACATGGGCTAC
CCCTCCCGACATGCGCCGGCCGGGGCC---------------------------
>chr1D_4
---TCTGAAAACATTGAGCATTGTTCCATGTAGATTCTGGAAC----TAGCTCGACCGCATATGGCAACATGATAGGGAG
ATGCTCTCCTCTCTGCGGGAACACTCTTTTGTCCCGATTACCTCACCCACCCGACTAATCCCGCATTATTGTTGGCTGCA
TCGATGACCCTGTCTTTGACAGGTCTTTTGGGACTGAAAAA--GAGATAG----CATTTTGTTATTTGTCTTTCCCACTG
CAAGGTCTGCCGCATGACAAGTGTCAGCAGAGAGT-----AGTACATGACACACAAATATAAGATGTTCTAACCTTTTTC
TG-AATCGGATGTATATTATCATGTCTTAGTGTATTTGTTCACTTGTTTCACCTCGTAT---------------------
--------------------------------------GTAGTCTATATTGAAA---TATC---AAAAACATCTTGTATT
TGTGAACGGAGGTA------CACGATTTGCGAATGTGATTCTGTTTGACCAAATTTAGAGCAACCTACGTGTGACACATC
CTCACAATTCTGTCGGCGTGTAGTTTTAGATGATGCAAATGCAAATGAAAATGATCATCATTTTGGCC------------
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-----------------------------TATATCCACTC---TACGATACAAAATGCACAGTATAATTCTCGACCATAT
TTGGATGGAATTTTTCAATGGCAAACAGTCTGCTCTGTGCCCTGGAACAGTGAAAAGTACTATTCCTACATGGTCCGCAA
TTGCAAGCCTTTTTTAGCCTCTGCATTGGAACAGAAAAAGAAGGGGACACGGCACCAAACGCCTTGCTTCAGAGACGTCA
ACCGGTCTGTTTGTTTCTTCTCTTTTTCCACACAGCCT-CCTCCTCGCCCGCCTCTATATTATCTTCCTCGCCGCGCCAC
TCACTTCCCGCGCTCGCCTCGGTTCACACGCACGCAGCTACCTCTGAGTCCTCACTCACGCGCATACTGAGTCACCGATC
CAAGCCTCTCTCTCGCC--ACCTCGCGCACCGTCAA-------CGTCTATGGAGGCCTCGCCGTCTCGCAGCGACAGCTT
CTCCCGCGCGTGGCTCGGCTGCAGGGCGTCCATCGAGCGGCTCG------ACGCCGACGCCGGCCTCGGGTGCTCGTTCA
ACAGCTCCACGTCCTTCATCGACATGGACCCCGCGGAGCTCTTCTCCATGCGGTGGACGTCCTCCGCCGCAGTGCCGGCG
GAGGATGACGAGGAGGCTGCCGAGTTCGACTTCGGCCAGCTGACGTGCGCCGGCGCGCAGTGCTTCTCCCCGCTGCTTGT
CGGCGCCGGACAGCCCCTCCTCCCGTGCGAGCCTGGCGTCGTGTCCTAC------------GTGTCGTCGCCCGCTTTCT
ACTCCGCGCAGAGCACGCCGGCCTCCGCGGTCAGCTCGCGCCGCCGTGGCCGGCACGCGCC------GCTGGTGGCGACG
CGGAGGATACTGCTCCGGTACCTGCGCCTCCTGGCGCCGCTGTGCCGGAAGGTGAGGGCGCTGCCGGTGCGGGCGCTCGC
GCCGCGGTCGTCGTCCAGGTCTGCTGCCTTGGCCGCGGCGACGTCGTCCCCGGCGCGGCAGTCCACGTCCAGCTACGCGA
GCGCCACGGAGTACTGGTGCCACGGCCACGCCGACACCGCCGTCAGCGACGCCATCCTCTACTGCAAGAAATCTATCCAG
GGACGACAGGATGCCGTGTAGGCCGGCCGGCAAA-------------AGATCGGTCGCTGCTCCTTGGGGATTTTGATTG
ATTTCCGGTGTAGATCCTATATGCATGTGGTACCTGAGTGTATAGCGTATACGTTACGAAGTAAGCAAGTATGAGCTGTG
CTCCAAGGTGGTTTAACCTTGTGAAGCATTTTGAACAAGC----A-GTTAACCTTGTGATGAAGCTACCTGTCACTGTCA
TGTGGGCTGTGCTCATCAATTGTTAAGGACGAGATTCGGTTCAAAGGAAATTGTTAAGGAAGATACGCACTTCTGTCCTC
TCCTTCTAATTGCCATGATTATGCGCGTATTATATATGT--------ATGCATGCATCAGGCCAGGCAGACCCCATGCGT
TAGGTCAACAAACATCGACTTA-----TTGATTATTGTGATTCGTTTGAGCAAACTCATGTGTTTTCCCTGGCAAGGCAA
GGCGCATTCTAAAACTCATTCAAACCTA---TAGGCTGCTGATATCGATCAGGTCAAGCCGAACGACCATGTCCAAGTCG
CCGAGTCAAAC---------------------------------------------------------------------
-----------------------------------------------------------ATATAGCTGCACAGTTGATCC
ATTATCTTCTAGGTCGTCCAGTCAGCCAGGGTAAGA--------------------------GACATGTAGACCGTTTCA
TACCGACATTACGG-------------TGCAATCTTCCAAATGACAGTAGATACGCACAGGGCATCGAACTTGCAGAGCA
ATATCATTTGTA--------------------------------------------------------------------
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>SNPs
-------------------------------------------------------S------------------------
------------------------------------------------------------------S-------------
--------------------------------------S-SSS-------------------------------------
--------S------------------S------------------------S---------------------------
-------S--------------S--------------SSSSSSS---S-SSS---SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------SSSSS--------S--------------
----------S-----------------------S------S--------------------------------------
--------------------------S--------------------------------------S--------------
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--S--------------------------------------------------------------------SS-------
--------------------------------SSS-SS------------------------------------------
----------------SSS------------------S-SSS--------------------------------------
---------------------------------S----------------------------------------------
----------------------S---------------------------------------------------------
--S-----------------------------------------------------------------------------
---------------------------------------------------------------------S----------
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--------------SS----------------------------------------------------------------
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-----------------------S--S---SSSSSSSSSSSSSSSSS--------S-------S--S-------------
-----------------S--S------S-S------------------------------S-S-----------------
------------------------------------------------------------------------------S-
------S---------------------------------S----------------S----------------------
-----------------------------S-------------------------S----------S---------S---
-------------------------------------------------------------------------------S
SSSS--------------------------------S-----S------S------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
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-------------S--------SS-SSSSSS----------------------------------S-----------S--
-S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS-----------------------S-----------------S--------------------S---------------
--------------S-------S----SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1218
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------------------------------------------------------------------------------TC
CAAGCCTCTCTCTCGCTA--------------------------------------------------------------
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>reverse_2601
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----------------------------------------TATTTCCGGCGGAGGGAGTA--------------------
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