>input_sequence_72314
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---ATGGTACGCAATGTCCATACGATCTGCTTCCGAT------TCTCCCTGTTCTTTTTACTCAGTTCGTGCTTTGTTAA
TTTGTAATGGACTCGTGAAGAACTTTGGTGGATTTTGGTT---GCGTGAACATTGCAGGCGAACGCGGTGTCGGGCGTGG
CGGTGAGCGAGGAGTGCGTGAGGGCGTTCCAGGAGATGCGCGCGGGGCGCGCGCACCGCTTCGTGGTGTACAAGATGGAC
GACGCCGTGCAGCGGGTGGTGGTGGACAAGGTGGGCGGCCGCGACGCCGGCTTCGACGACCTCACCGCGGCCCTCCCCAC
CGCCGACTGCCGCTACGCCGTCTATGACCTCGACTTCACCGTCGGCGACGCCACCGCCAAAGGCGCCGACGGGGAGGCGC
CGCGCAGCAAGATTTTCTTCATCTCCTGGTACATTTCT----------CTTAAATAGCACTCGTGCTCCTGTATATGTG-
---TGTGACCAACTGTGTGGGCTGCACGATGACATGGTGGTGTTGGTTGGTTAATAATGAAGGTCGCCGGCGAGTGCGGA
GGTGAAGAGCAAGATGATCTACGCCAGCTCCAACGAGGGGTTCAAGAAGGAGCTGGACGGCACGCAGATCGACGTGCAGG
CCACCGACCCCAGCGAGCTCACGCTCGACATCCTCAAGGACCACGCCACCTAA---------------------------
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>chr5D_1_TraesCS5D01G492300
ATTTATCCGTCCATGCAATTATACTCCTTATTTTCTCCTTTATAGGTCCAGTCAATTGTATTTGATCCTAAAAAAATATA
TGTGATCGGTGGAGGTGAAGATAATGAAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAGGTTGTCCGGGGAGGGC
TGCATCATACGGGCGAAGACACTGGACGCGTCGGCGAGTCCTCGTATTCTCCTCATATTTTGTCTCAATATAAGAGTTTG
CGGATAACCCAAACGTATAGGGGTGATATAAAGCGTTCGGTTGGATCATCTTTTTTTTTTCTTTTTTCTGTCCAGTCACT
GATTGGACGCTCCTCCAGACGTTTAACAAGGATTCGGAGAGGCGGGCTGTAAATACTTCTTTCTTCGTCTTAAAATAAGT
GTAACTGATTTAGTACACATCAATGACACTTATTTTGAAACGGGGAGTATAAGAGTTACGTGTGATGGTCAA-CCTGAAT
GGCACGGCGGGAATTCGCAGCTCAATTCAATTTCT------ACTCGCCTGGATACGCAAAG-GAACCTTGGACGCCGTGA
TTGACAGGTGTACCAACCGAAATGTGCATGTCACTGCG---GAAGCACAATCCAACTGCTTAGCTGATCTTCGCGAATCG
AGGC----AGATGATTTCAAATGGA--------------AA------ACCGCCGACCGACCACGCAACCGGAACTGGCCA
CCATCCCCAC--CAGATAGATGACTTTTCCAGCTTCGATTCTTGGGCGTGAGTCACTCCAATTCTTCTTCTTCCCGCTGC
CACATCGCCACATCCAGAACAGTCCGCCCGACGGAGAGCGACACCCCAGCGCCCACACGTGTACACCTCCCCAGTTCACC
TCACTGACACTGGACACGACACACAACACAACCATCCTATTTAAGCACCAGGCGACACCACGCTGAAATAATAACAAAAA
TCCACTGCAAAA------AACCACTAGCAGTTCTTCGTTGCAGCATCATCACACAGATTTAAGGTTCAATCTCCAGATAG
AAAATGGTACGCAATGTCCATACGATCTGCTTCCGAT------TCTCCCTGTTCTTTTTACTCAGTTCGTGCTTTGTTAA
TTTGTAATGGACTCGTGAAGAACTTTGGTGGATTTTGGTT---GCGTGAACATTGCAGGCGAACGCGGTGTCGGGCGTGG
CGGTGAGCGAGGAGTGCGTGAGGGCGTTCCAGGAGATGCGCGCGGGGCGCGCGCACCGCTTCGTGGTGTACAAGATGGAC
GACGCCGTGCAGCGGGTGGTGGTGGACAAGGTGGGCGGCCGCGACGCCGGCTTCGACGACCTCACCGCGGCCCTCCCCAC
CGCCGACTGCCGCTACGCCGTCTATGACCTCGACTTCACCGTCGGCGACGCCACCGCCAAAGGCGCCGACGGGGAGGCGC
CGCGCAGCAAGATTTTCTTCATCTCCTGGTACATTTCT----------CTTAAATAGCACTCGTGCTCCTGTATATGTG-
---TGTGACCAACTGTGTGGGCTGCACGATGACATGGTGGTGTTGGTTGGTTAATAATGAAGGTCGCCGGCGAGTGCGGA
GGTGAAGAGCAAGATGATCTACGCCAGCTCCAACGAGGGGTTCAAGAAGGAGCTGGACGGCACGCAGATCGACGTGCAGG
CCACCGACCCCAGCGAGCTCACGCTCGACATCCTCAAGGACCACGCCACCTAACCAATCAATCAATCCCTCCCGTGTGTA
TGTATGATTGACGGTTCACGCGTGCACGTTACGTGCGTGCGTGTGCTAGTTTTGTGCTGTGCATGTATCTTTGCCCTCTT
CGATTGTGTTGTGTGCTTCCAACTGGATCGTGTCGTCCGCACGA--AGAATGATGATGATTTCCCTTGT----ACTACGT
GGTGTGCAAATAATTGACTCTTTCCTCAAGTGAAACACGTAATGGCAACGAATTAGTTGAGGACATGGTGATCTCTGATT
CTCCTCTTCGGAAAAGGAAAAACATCTCACTTGCATCTTCAACGTCCACCCTCAAACCGCTCGCATCCGTACGGACCACA
CCTAACAGCGAAAGCCATCCAACACAACATTGTATCGATCTATGGTGCAGTTTGGACGTACTTTCTCTCGTAAACTGAAG
GCAAACATG-GG--CATTGCGTACGTCTGGACATCATCCATGCTCGCCTTCTGTGACCACACTGGCCCACCAAAACCCTA
CTCCTCCCTCGTCAGCG--------------------GCTGCCCGCATTTATGCGGCTGTAGA--ACGCCGCTGCACATT
GAAGACGGCTCAAAACTCAAAACGAACGCGACTTACTATCTCCGCCATTGAAGCATCACGTCGGCCGAGGACGCTGCCTG
CTGCACGCTCGGCTGAACATGCCTACTCGCCGCATTTAAACGACTCCATTAAACTCGTATGGAAGCCGAGAAACCTACTC
CGGCCACACGTCCGTTCACGAGCG-GTCAGCATTAAACACAACATCAGGCAAGCTCCTCCCGTCCGGCTGGTATTTAAAG
GAGGCCAGACGCCGGACAAAAATCGCACCACTCCGTCGCT-CCCATCTCCTCCTTGCACTTGCACCATTTTCTCTATCCT
TTCGATGGCATTCCACGAGCAGAAAGAGCAATTCTCCGGCATAAAAGCCGGCTGGGTGGCCCGTTGAGCCGGCCGGATAC
GAGCGACGCAGCTCGCTGCTCCACCTCCAAACCAAACGAAGCAAGT
>chr5B_446
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---------------------------------------------AGCATGAGAGTTACGTGCAATGGTCAAACTTGAAT
GGCACGGCCGGAAATCGTTGGAACAGTCAATTTCCTATTTCACTCACCTGGATACGCAAAG-GAACCTTCCA--CCGTGA
TTGACAGGCGTACCAACCGAAATGTGCACGTCACTGCG---GAAGCACAAACCAACTGCTGAGCTGATCTTCGCGAATCG
AGGTACGTAGATGATTTCGAATGGACAAGGCACGCCCTGACCCTCAGTCTGCCGACCGACCACGCAACCGGAACTGGCCA
CCATCCCCACTCCAGATAGATGGCTTTTCAAGCTTCGATTCTTCGGCGTGAGTCACTCCAATTCTTCTTCTTCCCGCTGC
CACATCGCCACGTCCAGAACAGTCTTCCCGACGGACAGGGACACCCCAGCGCCCACACGTGT-------------TCACC
TCGCTGACACTGGACACGACGCACAAC-----CATCCTATTTAAGCGCCAGGCGAGGCCACGCTGAAATAAT-ACAAAAA
CCCACTACAGAA------TACTACCAGCAGTTCTTCGTTGCAGCATCATCACACAGATTTAAGGTTCAATCTCCAGACAG
AAAATGGTACGCAATGTTACATTTACTTATGACCTGCCTCTCCTGGTCCTCTTCTTCTTAATCAGTTCACGCTAGC-TAA
TTCGTTGTGGATTTGTGAATAACTTGGGTGTATTTTTCA--------------TGCAGGCGAACGCGGTGTCGGGCGTGG
CGGTGAGCGAGGAGTGCGTGAGGGCGTTCCAGGAGCTGCGCGCGGGGCGCGCGCACCGGTTCGTGGTGTACAAGATGGAC
GACGCCGTGCAGCAGGTGGTGGTGGACAAGGTGGGCGGCCGCGACGCCGGCTTCGACGACCTGGCCGCGGCACTCCCCGC
CGACGACTGCCGCTACGCCGTCTACGACCTCGACTTCACCGTCGGCGACGCCACCGCCAAAGGCGCGGACGGGGAGGCGC
CGCGCAGCAAGATCTTCTTCATCTCCTGGTACGTTTCT----------CTTAAATAACACTCGTGGTCCTGTGTATCAGC
ATATGTGACCAAATGTGTGGGCTGCACGATGACATGTTGGTGTTGGTTGGTTATGTAA-AAGGTCGCCGGCGAGTGCGGA
GGTGAAGAGCAAGATGATCTACGCCAGCTCCAACGAGGGGTTCAAGAAGGAGCTGGACGGCACGCAGATCGACGTGCAGG
CCACCGACCCCAGCGAGCTCACGCTCGACATCCTCAAGGACCACGCCACCTAACCAATCAATCAAGCCCC--------TA
TGTATGATTGACGGTTCACGCGTGCACGTTACGTGCGT----GTGCTAGCTTTGTGCTGTGCATGTATCTTTGCCCTCTT
CGATTGTGTTGTGTGCTTCCAATTGGATCGTGTCGTCGACCCCAAGAGAATGATGATGATTTTCCATTGTACCACTACGT
GGTGTGCGAATAATTGACTCTTTCCTCAAGTGTAACACGTAATGGCAACGA-TTAGTTGAGGACATG-------------
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>chr5A_451
A-------------------------------------------------------------------------------
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---------------------------------------------------AGGGTTACATGCAATGGTCAA-CTTGAAT
GGCACCACAGGAATTCGCAGATCAATTCTAGTTCT------ACTCACCTGGATACGCAAAACGAACCTTCCA--CCGTGA
TTGACAGGCGTACTAACCGAAATATGCACGTCACTGCGGATGAAGCACAATCGAACTGCTGAGCTGATCTTCGCGAATCA
AGCTAGATATAATGCTG---ATGGAAAGGGCGCGCCCTCAA------TCTGCTGACCGACCACGCAAGCGGATCTGGCCA
CCATCAGTCGAGACGAC------CTTTCCAAGCTTCGATTCTTGGGCGTGAGTCACTCCAATTCTTCTTCTTCCCGCTGC
CACATCGCCATGTCGAGAACAGTCCGCCCGACGGAGAGCGACACCACAGCGCCCACACGTGT-------------TCACC
TCGCTCACATTGGACACGACACACAAT-----CATCTTATTTAAGCACCAGGCGACACCACGCTGAAATAACAACAAAAA
ACCACTGCGAAATACTCCTACTACTAGCAGTTCTTCGCTGCAGCATCATCACACAGATTTAAGGTTCAATCTCCAGACAG
AAAATGGTACTC-----------------------------CCTCTTCTTCTTAATCTTAATCAGTTCACGCTCAATTAG
TTCGTCGTGGATTTGTCGATAACTTTGGTGGATTTTTGGTTGCGCGTGAACATTGCAGGCGAACGCGGTGTCGGGCGTGG
CGGTGAGCGAGGAGTGCGTGAGGGCGTTCCAGGAGCTGCGGGCGGGGCGGGCGCACCGGTTCGTGGTGTACAAGATGGAC
GATGCCGTGCAGCGGGTGGTGGTGGACAAGGTGGGCGGCCGCGACGCCGGCTTCGACGACCTCGCCGCGGCGCTCCCCGC
CGACGACTGCTGCTACGCCGTCTACGACCTCGACTTCACCGTCGGCGACGCCACCGCCAAAGGCGCCGACGGGGAGGCGC
CCCGCAGCAAGATATTCTTCATCTCCTGGTACGTACTCCTGTGCTACGCTTAAATAGGAGTACTTCAAATC---------
--ATGCAACTACGTACGTGAGCCGCACGATGATGACATATGTG----TGATTATTGATGAAGGTCGCCGGCGAGTGCGGA
GGTGAAGAGCAAGATGATCTACGCCAGCTCCAACGAGGGGTTCGAGAAGGAGCTGGACGGCACGCAGATCGACGTGCAGG
CCACCGACCCCAGCGAGCTCACCCTCGACATCCTCAAGGACCACGCCACCTAACCAATCAAGCAATCCCTCCAGTG----
TGTATGATTGACGGTTCACGCGTGCACGTTACGTGCGT----G--CTAGTTTTGTGCTGTGCATGTATCTTTGCCCTTTT
CGATTGTGTTGTGTGCTTCCAACTGGATCGTGTCGTCGACCCCAAGAGAATGATGATGATTTTCCATTGTACTAT---GT
GGTGTGCAAATAATTGACTCTATCCTCAAGTGAAACACGTAAT-------------------------------------
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>chr2B_2061
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----------------------------------------------------TGGACATACTTTCTCCCCTAAACCGAAG
ACAAACATG-GGGGCTTTGCGGGCGTCTAGACAGTGCCCCAGCCCGCTTC---TGACCACACTGACCCACCAAAACCCT-
CTCCTCCCTCGTCCGCGTGCATTCCCTCACGACACCAGCTACCCACATTCATGCCGCTGTAGAGCACGCCGCTCCAC-TT
GAAGACAGTTCAGGGTGGACGCGATCT----CTCGGTGTCTCCGCCATTGAAGTGGTGACGCGGCCTAGGGTACCGCCCG
CTCCACACCTGGCTGAACACACCTCCTCGCCGCATTCAAACGCCTCCATTAAACCTGCGTGGAAGCCGAGAAACCTACTC
CGGCCACACGTCTGTTGACGAGCG-GGCGGCATTAAACACAACGCCGGGCAAGCTCCTCCCGTCCGCCCGCTATTTAAAG
GAGGCCTGACGCAGGAAAAGAATCGCACCACTCCGCCGCTACCCATCTCCTCCTTC------CACCATTTTCTCCACCCT
TGCGATGCATTCGAGAACCAA-GAAGAGCAGTTCTCCGACATAAAAGTCGGTTGGGTGGCCCGCCAAACCCGTCGGATAC
GAGTGAGACATCTCGCTACTCCACCTCCAAGCCCGACGGAGCAAGT
>chr3D_2070
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-------------------------------------------------------------TTTCTCCCGCAAACCGAAG
ACAAACACGAGGAGGTTTGCGGGAGTCCGGACTACTATCATGCCCGCTTC---TGACCGCCCTGGCCCACCAAAAACGT-
C--------------------TTCCCCTCCCACGCGCGCTTCCCGAAATCATGTCGCT-TAGAGCGCGCCGCTTCACATT
GAAGGCGGCTCAGGGCGGACGTGACCT----CTCACTGCCTACGCCATTGAAGCGGCACGCAGGCTGAGGGCGCCGCCTG
CTGCACGTCCGGCTGAACACGCATCCTTGCTGCATTCAAACGCCTCCATTAAACCCACGTGGAAGCCGAAATAACTACTC
CGGCCACACGTCCGTTCACGAGCGTGTCGGCATTAAACGCAACACCAGGCAAGGTCCTCTCGTCCGCCCTCTATTTAAAC
GAGGCCAGATGCCGAGCAAGAATCGCACCACTCTGCCGCTCCCCATCTCCTCCTTC------CACCATTTTCTCCACTCT
TTCGATGGCATCTGATGAGCAGGAAGAGCAGTTCTCCGGCATAAAAGTCGGCTGGATGGCCCGCCGAGCCTGGTGGATAC
GAGCGAGGCAACTCGCTGCTCCATCTCC------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S-----------SS----------S-----
--------S-----------S------------------------S-----------------------SS-SS------
--------S-------------------S-------------------------------S-------------------
---S--------------S----------------------------S-S------------------------------
----------------------S------S--------------------------------------------------
-----------S--------------------------------------------------SSSSSSSSSSSSS-----
--S------------------------SSSSS------------------------------------------------
S-----------------S--S-------------------------------------------------------S--
-----------------SSSSSSS-SS-SSSS--SSS---------S---S-----S---S-------SS---SSS----
--S--SS----S-S-----S----------------S-S-----------------------------------------
-----------------------------------S----------------------S---------------------
---------------------------------------------------------------S-------S------S-
--S---------------------S-------------------------------------------------------
-------------S------------------S---------------------------------------S---SS--
------------S-----------------------S----------------S-S------------------------
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------------------------------------------------------------------------S---SS--
--------------------------------------SSSS--------------------------------------
-------------------------------------SS-S-S-------------------S--S-SS-----------
---------------------------------------------------S---------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---------S-------S----
S--------------S-----SS----------S-SS------S---S-SSSS--------------------------S
-------------S--------------------------S--------S----S------------------S------
------------SSS-SS-SSSSSSSSSSSS--S---S----------------SS----S---------S---S-----
--------S----------S----S-----------S-----S-----------S--SS---------------------
----------------------------S---------------S---------------------S-S-S---------
-------------------S---------------S-------------------SSSSSSS------------S-S---
-----------SSS-S------S-------S----------------S---------------SS-----S-S-------
------S---S-------------------S--SS---S-------
>forward_331
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-----------------------------------------------------------------------CCAGTCACT
GATTGGACGCT---------------------------------------------------------------------
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>reverse_2073
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------------------------------------------------------------------------GGACCACA
CCTAACAGCGAA--------------------------------------------------------------------
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