>input_sequence_72303
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-----------------------------------------------ACCACGGGACAACCAAACCACCACCTGCTCTGT
TCCTCCAATCCGCTGCCCTGCCTTAGCCAAGCTCTGCCGTCGGCCATGAGACGACGCGCCGGTGGCGCTGGCACTCCTCC
ATTGCCAGACACGCTCTCGGTGTCGCTTCTGCTGCTGCTCCTGCTGGTGGCGACCGAGCTGGGCACCGCGGCCTGCGTCT
GCGGAGTTCTTAAGGCGGACGCGGTAGCGGCGGCGACGGCTGCTGCAGCAGCGCGGAAGCGCGGCGGCACGGTGCTTCAG
ACAGGACCGCCGGCGGCGGCGTGCACCGGCGAGGCGGGAGGAGCGGCGTACGACGAGTCCAAGAGGATGGTACCCCAGGG
CCCCAATCCGCTGCACAACTAGCCT-----GGCCTTCTCATCAGGCTCTGCCGGCTGCCGCGGCGAGCTAGCAGTACGTA
CTACGTACGTGCCGAGGAGTGGACTGCATGCAGTACCA-CTGCGCCCTGCCTT--TTTTGTTTATCATTTTCTCCTTGCC
CTTGTGCCGAAGAGCACGCATAGCAATGCACACACGCTTTTCAGTGTTGTTGTTTA-----------GGTATCAGTATCA
GCTAGCTAGCCA---GGTAGGGCAAATCGATCAAGGCCACGCGAGATTGT-TGTACTAGTGCCAA------GTGATCTTC
TAAAATTAAATCTTTGTAT----GTTGA----------------------------------------------------
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>chr6B_1_TraesCS6B01G264700
AACTACATACGCAAACCAAATTTAAATGGCGTCGACCGGCAGCCACATAAATTGGACAGCAGCAGCAGCAGCAACCAATA
CCAGTCAGTAGATAGAACGCACGCACGACACTCCGTCGTCTCAGACAGTTAGAGCCAACTGTTACGTCGTCACTCTGGCC
TTCATAAATCACGGGGCTCCCGTTTTAATCAAGAGCATCGAGTGCGCACTAACTCCAGCTTAAT---------GCTAGTG
CTCCAGCG---------------GAAAAAAAAAAGAGAAAAGGCTCAGCATACTAGTGCA---AGTAGCTCGCAGAGTAA
ATCTTCCGTAGTGTCCAAGAACACGCATACGAGTCCTCGATTCCCAGGGCCAGGAGTAGCAGGTGAGACAATATCACTGG
TGCGTTTGATGTACCACTCCACACTGTGCGCTTACAGT--ATACTCCGGCACTGTGCCCAAGTCTACTGAGAAGACGCCA
AATTGGACATCCAGTGCGCGCGGCATGATTCATGTCTTGAAACGGTACCGTCTAACGTCTGACCAGAATTTTGTCGTCCA
TAATCGAAGGGTCCAAAGCTACTCA---AGTCTCAGCCCGTCCGACCGAATCAGCCTTTCCCAAACATAAATTGCAACTG
CATCTCTCAGCTGAACCGTGAGCCAGCCGCAAGGGTTTTTGCCCGGTTTATGTACAATTATTATACTCAATTTTGCGATG
ATTTATACGATTATACCGAGAGGAAGATTCAGTAAATAACAGGAATTACTGACGACTATGGTCTCACGATCCAAGGGTAT
TGGAATTCAAGTACGATCTCACGA--------------------------------------------------------
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----------------------------------------------------CGCAAGGTGTTGGAATTTATTTAT----
AGAACG-----------------------CGTTTGCTTCGTTTCCACGGGCCCAGCTTTCCCGATTGGCCACACTCGACA
GGAGCGTAAATCCACGCTCGCAAAAGGCGGACCCCGTCTCTTTCCTCTCGTGCGACATCTGTCTGGCCTCCTTCTCCTCC
TCCTCCCCCCTACCTCCACACACAACGCAGACAACTCCTCAAATCTCACCACGGGACAACCAAACCACCACCTGCTCTGT
TCCTCCAATCCGCTGCCCTGCCTTAGCCAAGCTCTGCCGTCGGCCATGAGACGACGCGCCGGTGGCGCTGGCACTCCTCC
ATTGCCAGACACGCTCTCGGTGTCGCTTCTGCTGCTGCTCCTGCTGGTGGCGACCGAGCTGGGCACCGCGGCCTGCGTCT
GCGGAGTTCTTAAGGCGGACGCGGTAGCGGCGGCGACGGCTGCTGCAGCAGCGCGGAAGCGCGGCGGCACGGTGCTTCAG
ACAGGACCGCCGGCGGCGGCGTGCACCGGCGAGGCGGGAGGAGCGGCGTACGACGAGTCCAAGAGGATGGTACCCCAGGG
CCCCAATCCGCTGCACAACTAGCCT-----GGCCTTCTCATCAGGCTCTGCCGGCTGCCGCGGCGAGCTAGCAGTACGTA
CTACGTACGTGCCGAGGAGTGGACTGCATGCAGTACCA-CTGCGCCCTGCCTT--TTTTGTTTATCATTTTCTCCTTGCC
CTTGTGCCGAAGAGCACGCATAGCAATGCACACACGCTTTTCAGTGTTGTTGTTTA-----------GGTATCAGTATCA
GCTAGCTAGCCA---GGTAGGGCAAATCGATCAAGGCCACGCGAGATTGT-TGTACTAGTGCCAA------GTGATCTTC
TAAAATTAAATCTTTGTAT----GTTGACACCTATGGCTTGATTTTTGTTATGTTGTGCCACTG----TGTGCATGCTTC
CCGCGCTCTTCTTCGAGAGGAATTTGCTCGGTGTTTATTACTCCCTCTTCCTCAAAATATAAGACGTTTTTTGGGGCCTA
GACTTAGGTAAAATAACGTCTTATATCTTGATTTTGATACAGAGGGAGTATATCTTAGGGCAGCAAAGTGTTCTTTGTAA
CATGCTGTGTGAAGCATCACTGTGAAGAAGCCACTAGAGCGAGCTGGTTTAGAAGACGAGCAACAAAGTTGGTAGGGGCA
GCAAAGCATTACTGAATTTCAATAGGTAGAATTAAAGACGGGACAGGCAATGCGCGGATCACGGCTCGCAGGAGAAGGTC
CAGTGCACTGCATGCAC---ACCTTTTGCAGCTTCAATTCCCTCAGAGAGAAGAAGGTGAGTAGGGCCTCTCGGTTTATC
TTGCGGTGAGGTTGACGAATTTACCGTCGCGAGCTAGGGCCAACGCAAATGTTATATGGGTTACGCTCACGGCTCTGAAA
ATGTCAGGGGAGCATTTGGTTCTGAATTCTGATACATCACTGTTTGAGGACCACAGGGAAAGATGCCTCTGCAAGACTTT
GAGTCCC--TTTTCTTGCAAAGTTAATACTACTTCAGTTAA-TCCCACAAAAAAAATGACTGCAGCCAGTCAATGTGAGG
ATCAGGAAAGTGCAATAAAAAGTCAAAAGCAGAGTCAAATAGGTGTAGTTATATTGCTACTGTAACCAGGCA----GCCA
AAAGCAGACTGTTTTGGAAAGGCGTCATAAACAGTATACTATTATTTCCAGTACTAAGAAGACACTTAATGCAGGAATTG
CAGATATCTACAGTTTAAATTC---------------ACTTCTAACATGATTGATGAAGCCAAACTGACTTTCAGCTCAA
AAGGAACAGATAAAAATCCAAAGTGACTGAGTTTTTTGGTTCGAGGAAAAATTGACTGAGTTTCGTATTATATTTGCATG
AGATGGTGATTCAAGCC
>chr6D_1
AACTACAGACACAAACCAAATTTAAATGGCATCGACCGGCAGGCACATAAATTGGACAGCAGCAGCAGCAGCAACCAATA
CGAGTCAG----TAGAACGCACGCACGACACTCCGTCGTCTCAGACAATTAGAGCCAACTGTTACGTCGTCACTCTGGCC
TTCATAAATCACGGGGCTCCCGTTTTAATCAAGAGCATTG----------AACTCCAGCTTAATCACTCGCGTGCTAGTG
CTCCCGCGCAAAAAAAGAAAAAAGAAAAAAAGAAAAAAAAAAGTTGAGCATGCTAGTGCAAGTAGTAGCTCGCAGAGTAA
ATCTTCAGTAGTGTCCAAGAGCACGCATACGAGTCCTCCATTCCCAGG------AGCAGCAGGTGAGACAATATCACTGG
TGCGTTTGATGTACCACTCCACAGTGTGCGCTTACAGT--ATACTCCGGCACTGTGCCCGAGTCTACTGAGAAGACGCCA
AAGTGGACATCCAGTGCGCGCGGCATGATTCATGTCTTGAAACTGTACCGTCTA-CGTCTGACCAGAATTTTGTCGTCCA
TAATCGAAGGGTCCAAAGCTACTCAAGAAGTCTCAGCCCATCCAACCGAATCAGCCTTTCGCAAACATG-----------
---------------CTGTGAGCCAGCCTCAAGGGGTTTTGCCCGGTTTATGTACAATTATACTCCTT--TTTGGCGATG
ATTTATACAATTATACTGAGAGGGAGATTCAGTAAATAACAGGAATTACTGACGAGTATGGTCTCACGATCCAAGGGTTT
TGGAATTCAAGTACGGTCTCACGA--------------------------------------------------------
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----------------------------------------------------TGCAAGGTGTTGGAATTTATTTAGTATA
AGAACG-----------------------CGTTTGCTTCGTTTCCACGGGGCCAGCTTTCGCGATTGGCCTCACTCGACA
GGAGCGTAAATCCACGCTCGCAAAAGGCGGACCCCGTCTCTTTCCTCTCGTGCGACATCTGTCTGGCCTCCTCCTCCTCC
TCCTCCCCCCTACCTCCCCACACAACGCAGACAACTCCTCAAATCTCACCACAGGACAACCAAACCACCACCTGCTCTGT
TCCTCCAATCCGCTGCCCTGCCT-AGCCAAGCTCCGCCGTCGGCCATGAGACGACGCGCCGGTGGCGCTGGCGCTCCTCC
ATTGCCAGACACGCTCTCGGTGTCGCTTCTGCTGCTGCTCCTGCTGGTGGCGACCGAGCTGGGCACCGCGGCCTGCGTCT
GCGGAGTTCTCAAGGCGGACGCGGTAGCGTCGGCGACGGCTGCTGCAGCAGCGCGGAAGCGCGGCCGCACGGTGCTTCAG
ACAGGACCGCCGGCGGCGGCGTGCGCCGGCGAGGCGGGAGGAGCGGCGTACGACGAGTCCAAGAGGATGGTACCCCAGGG
CCCCAATCCGCTGCACAACTAGCCTGTACTGGCCTTCTCCTCAGGCTCTGCCGGCTGCCGCGGCGAGCTAGCAGTACGTA
---CGTACGTGCCGAGGAGTGGACTGCATGCAGTACCA-CTGCGCCCTTCC-T--TTTTGTTTATCATTTTCTCCTTGTC
CTTGTGCCCAAGAGCACGCATAGCAATGCACACACGCTTTTCAGTGTTGTTGTTTAG-----------------GTATCA
GCTAGCTAGCCAAGTAGTAGGGCAAATCGATCAAGGCCACGCGAGATTGTCTGTACTAGTGCC------ATGTGATCTTC
TAAAATTACTCTAATTCTTGTGAGTTGACACTTCTGGCTTGATTTTTGTTATGTTGTGCCACTGCACATGTGCATGCTTC
CCGCGCTCTTCTTCGACAGGAATTTGCTCGGTGTTTATTACTCCATCTGCCTCGAAATATAAGACTTTTTTTTGTCTAGA
---TTAGGTAAAATAACATCTTATATCTTGATTTTGATACAGAGGGAGTATATCTTAGGGTAGCAAAGTGTTCTTCGTAA
CATGATGTATGAGCAACAA------------------AGCGAGCTGGTTTAGAAGATGAGCAACAAAGTCGGTAGGGGCA
GCAAAGCATTACTGAATTTCAATAGGTAGAATTAAAGACGGGACAGGCAATGCGCGGATCACGGCTCGCAGGAGAAGGTC
CAGTGCTCTGCATGTACTACACCTTTTGCAGCTTCAATTCCCTCAGAGAGAAGAAGGTGAGGAGGGCCTCTCAGTTTATC
TTGCGGTGAGGTTGACGAATTTACCGTGGCGAACCAGAGCCAACGCAAACGTTATATGGGTTACGCTCACGGCTCTGAAA
ATGTCAGGGGAGCATTTGGTTCTGAATTCTGATACATCACTGTTTGAGGACCACAGGGAGAGATGCCTCTGCAAGACTCT
CAGTCCC--TTTTCTTGCAAAGTTAATACTACTAGAGTTAAATCCCC--CAAAAAATGACTGCGATCAGTCAATGTGAGG
ATGA-------GCAATAAAAAGTCAAACGCAGAGTCAAATAGGTGTAGTTATATTGCTACTGTAACCAGGCACCAAGCCA
AAAGCAGACTGTTTTGGAAAGGCGTCATAAACAGTACACTATTATTTCCAGTACTAAGAAGACACTTAATGCAGGAATTG
CAGATAGCTACAGTTTAAATTCACGAGTAGTACTAGTACTTCTAACATGATTGATGAAGCCAGACTTACTTTCAGCTCAA
AAGGAACAGATAAAA-TCCAAAGTGAGTGAGTTTTTTGGTTCAAGGAAAAATTGACTGAGTTTCGTATTGTATTTGCATG
AGATGGTGATTCAAG--
>chr6A_347
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-----------------------------------------------------GAGTAGCAGGTGAGACA-TATCACTGG
TGCGTTTGGTGTACCACTCCACACTGTGCGGTTATTATGCATACTCCGACACTGTGGCCAAGTCTACTGAGAAGACGCCA
AAAGTGGACTCCAGTGCGCGCGGCATGATTCGTCTCTTGAAACTGTATCGTCTA-CGTCTGACCAGAATTTTGTCATCCA
TAATCGAAGGGT-CAAAGCTACTCA---AGTCTCAGCCCATCCAACCGAATCAGCCTTTCCCAAACATAAATTGCAACTG
CATCGCTCAGCTGAACTGTGAGCCAGCAGCAAGGGTTTTTGCCCGGTTTAT--ACAATTATTATACTCAATTTTGCGATG
ATTTATACGATTATACTGAGAGTAAGATTCAGTAAATAACAGAAATTACTGACGAGTATGGTCTCACGATCCAAGGGTTC
TGAAATTCAAGTATGGTCTTAAAGCATCTATAGCCGGAGGCCCTAAACCCGTCATAAACACCCGGATGGACTCAGTCATT
GACCGATCACGAAAGTTCAACCTAGGCATACTCTTTAAACGTGCCTCAAACGTTCGGGTTGATCGGCACCCGTCATATCC
AACCCAAATATAGGGTGGATATGGGGGCGTCCGGGCGCGTCCCTCACGACGGACCCGACAGCCCCTACCCCATCGCAAAT
TACATCGAATCCACCAAACCCTTCCTCCTCCTTCCGCCTTCCTCCTATCTTTCCCGTGCCCTTGCAGTCGCCGTCCGCCA
CCCTTACTCCCCATCCTCTCCACCTGTCCTGATCCGCCGCCCTAGATGTCGTCAAGCCCGACCCCTACCGTCGCGACGGA
GACTGCGTCTGCCATGGCCTCGTCCGTTGGCGTCCCGTCCTCGGCTCCGTCATGCAAGGCGGAGAACGTCGCCCGGAGGA
TGTGGCGACGCCGACAGCAAGAGAGGGAAGCGGCAACGGCGTCACAGATAGATGCGGATAAGGAGGAGCTATTGTCCACC
CCCCCCCCCTCCCCTCCCCCGATCACGCCCCAAACCCTGCACCCCATTCATCCGTCCATCGACGCGAATTGTGCCATCGG
ACCACGTTGGGACAAAGGAGGATACGATGGCCGGTTGGGCCATTCCGGAGAGCTTTCCTCCCATGCAGACGCCGACGGTG
GACGTATGTCACTCGCCGCAGCTCGTTTGGGCACGGATGACACGGGCACCGGCGGCGCCCGGGTTGCCCACTACCTGTTC
GACAAAATGACACAACAAGAGTCGGTATATTTTTGTTGCTCCTGTCCGATCAACTTTGCATATGACATGTTCAATGTTTT
GCATAGACCGCTAGTTCATTTCGTATATGATTAATGCTTGCAAACCATGATCATTTAGGATGTGTTTCTGTCGGCCATGA
TCAAGGACAATCATGTTGGCGGATGAAATCCTCTTGGATGATCACACTAATGACAATCATGTTGCGAAGACATTGGAGAT
ATTGAACTTGAGAAGGAGAGATTGCAACTCGTACAGGACGCGGAGGATGAGAAGATCATGTTGGTGGATGAAACCCTCTT
GGATGAGCAAGCAAAAAAGTGGCTTACGAAGAAGAAGAAGAAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGGAGATCAACGAGCGTAGGGAGTACGAGGCCGCGAGGGCGGCTGCGGCAGCAACGGAGCATGGGACAAGGA
TGCAGGTGGAGCAGGAGGCAAAGATGGCCTCGAAGCAGGCCGGCATGGACGGCGTCCAACCAGTGATCCGGTCAGCAAGC
GAGCCATCCGGTCACACGCTTGGACACTTATTTCATTTTGGCACGTCGGAATTGTTGAACTATGATTTATTTTGCTTTGT
TTTGAACTGTTGAATTTGAACAATTTGTATCGTATAATCGACGTATATGGATTGCATGAATCAAAGGATCCGTATTTAAG
GTATGTGAATGTGTGTCACAAGATATGAAGGACCAACGGACGCTGTCCGGTGTGCAAGGGGTCGGATTTGCAAGTCCGGG
TGTAGATGCTCTTTATTGAAATTTAAGAACGCTTGCTTCGTTTCCACAGGGCCAGCTTTCCCGATTGGCCTCACTCGACA
GGAGCGTAAATCCACGCTCGCAAAAGGCGGACCCCGTCTCTTTCCTCTCGTGCGACATCTGTCTGGCCTCCTCCTCCTCC
CCCTCCCCCCTACCTCCCTACACAACGCAGACAACTCCTCAAATCTCGCCACGGGACAACCAAACCACCACCTGCTCTGT
CCCTCCAATCCGCTGCCT----T-AGCCAAGCTCCGCCGTCGGCCATGAGACGACGCGCCGGTGGCGCTGGCACTCCTCC
ATTGCCAGACACGCTCTCGTTGTCGCTTCTGCTGCTGCTCCTGCTGGTGGCGACCGAGCTGGGCACCGCGGCCTGCATCT
GCGGAGTTCTCAAGGCGGACGCAGTAGCGGCGGCGACGGCTGCAGCTGCAGCGCGGAAGCGCGGCGGCACGGTGCTTCAT
ACAGGACCGGCGGCG------TGCGCCGGCGAGGCGGGAGGAGCGGCGTACGACGAGTCCAAGAGGATGGTACCCCAGGG
CCCCAATCCGCTGCACAACTAGC-----CTGGCCTTCTCATCAGGCTCTGCCGGCTGCCGCGGCGAGCTAGCAGTACGTA
---CGTACGTGCCGAGGAGTGGACTGCATGCAGTACCACCTGCGCCCTGCC-TTTTTTTGTTTATCATTTTCTCCTTGTC
CTTGTGCCGAAGAGCGCGCATAGCAATGCACACACGGTTTTCAGTGTTGTTGTTTAGTAGGTTATTAGGTATCAGTATCA
GCTAGCTAGCCA---AGTAGGGCAAATCGATCAAGGCCACGCGAGATTGT-TGTACTAGTGCCATGTCCATGTGATCGTC
TAAAATTACTCTAATTCTTGTGAGTTGACACTTCTGGCTTGATTTTTGTTATGTTGTGCCACTGCACATGTGCATGCTTC
CCGCGCTCTTCTTCCAGAGGAATTTGCTCCGTGTTTATTACTCCCTCCGCCTCAAAATATAAGACGTTG-TTTGGGTCTA
GATTTAGATAAAATAACATCTTATATCTTGATTTTGATACAGAGGGAGTACATCTTAGGGTAGCAAAGTGTTCTTTGTAA
CATGCTGTGTGAAGCATCACTGCGAAGAAGCCACTAGAGCGAGCTGCTTTAGAAGATGAGCAACAAAGTCGGTGGGGGCA
GCAAAGCATTACTGAATTTCAATAGGCAGAATTAAAGACGGGACAGGCAATGCGCGGATCACGGCTCGCAGGAGAAGGTC
CAGTGCACTGCATGCACTACA-CTTTTGCAGCTTCAATTCCCTCAGAGAGAAGAAGGTGAGTAGGGCCTCTCAGTTTATC
TTACTGCGAGGTTGACGAATTTACCGTGGCGAGCTAGAGCCAACGCAAACGTTATATGGGTTACGCTCACGGCTCTGAAA
ATGTCAGGGGAGCATTTGGTTCTGAATTCTGATGCATCACTGTTTGAGGACCACAGGGAAAGATGCCTCTGCAAGACTTT
CAGCCCCTTTTTTCTTGCAAACTTAATACTACTACAGTTAAATCCCACACAAAAAATTACTGCAGCCAGTCAATGTGAGG
ATCAGGGAAGTGCAATAAAAAGTCAAAAGCAGAGTCAAATAGGTGTAGTTATATTGCTACTGTAACCAGGCACCAAGCCG
AAAGCAGACTGTTTTGGGAAGGCGTCATAAACAGTA--------------------------------------------
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>SNPs
-------S--S-------------------S-----------S-------------------------------------
-S------SSSS-----------------------------------S--------------------------------
--------------------------------------S-SSSSSSSSSS------------------------------
----S--------------------------S--S-S----S-S-S-----S----------------------------
------S-------------S-----------------S---------SSSSS---------------------------
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--S----------------------------------------S----------S-------------------------
---------------------------------------S---S------------------------------------
----S-----------S---------------------------------------------------------------
----------------S--------------------------------------S----------------------S-
---------------S----------------------------------------------------------------
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----------------------------------------------------S----------------------S----
--------------------------------------------------S-------------------S---------
------------------------------------------------------------------------S-------
-----------------S--------------------------------------------------------------
-----------------------S----------S---------------------------------------------
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----------S---------------------------------------------------------------------
------------------------S-------------------------------------------------------
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SSS------------------------------------------------S--------------------------S-
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---------------S------------------------------------------------S---------------
--------SSSSSS-SSS-------------S-S----------------------------------------------
------------------------------------------------S-----------------------S---S---
--S--------------S------------------------------------------S-------------------
----------------------S---------------------------------S------------S----------
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------------------------------------------------------------------------S-------
---------------------------S---------S-----------S------------------------------
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S--------------------------------S---------------S------------------------------
------S-------------------------------------------------------------------------
------------------------------------S-------------------------------------------
------S-------------------------------------------------------S---S-------------
---------------S----------S---------------S--------------------------S----------
---------------SS
>forward_128
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----------------------------CACTCCGTCGTCTCAGACAG--------------------------------
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>reverse_3543
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----------------------TGAAGAAGCCACTAGAGCGAG-------------------------------------
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