>input_sequence_72302
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--------------------------------------------ATGGCAGTGGAAGGAAGTGACAGAGAGAAGGGAAAG
AAAGTTGAGGATGTAGATGATCTACTAGCGAGACTTGACTTGCATGAAGATGATGGAGATGACTTCGTGTGGGAAGATGA
TCCGGAGGTCCCAAAGATCCAAGCAAAGTGGCTAGCTATTGCTAAGG-TCATACTACTAAGGGGTTTAGTCCGTCGGCCC
TTTACGCGGATATGAGGTCTGCGTGGAATCCGGCAAAAGTTGTGCGTTGGAGGATGATTAAGAATAATTTGTTTACAGTA
CAGTTTGGATGCCTCAGAGATTGGAACATGGCAATGATTAATGGACTGTGGCTTTTCAGGAATCAAGCGGTGATCTTGAA
GGAGTACGATGGATTTACGAATCCCAAATCAATCAGTCTGGACAGGGTTGAAGTATGGGCAAGAATCTTGAAATTGCCGG
ACAACTATCTTCATGAAGCTATGATAAAAGGAATGTGCAAAAAGATAGGAGAAATCCTGGAGGTGCAGATACAATTACCG
GCGGGTTATGTCGGCAAGTTTGTAAGGATAAAGGTGAACCTTAATGTGCATAAGAGGCCGGAGCGTTTTGTCTCAATTAC
CAAGGGGGGCAAGAAAGATTGGTATCAAGTCCATTATGAGAAGATGCCGATCTACTGCAACTACTGTGGATAA-------
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>chr6A_1_TraesCS6A01G270500
TTTTTGCACTTGATGAACACCCATACGGAATGTTCCGGCGTTGTAGATACGCGGCGCATGACCTGCCACGGGCAGTCGTC
GCACTTTATGAGCGGTAATTGTGCGATGACGAGCCGTTGGGCCAGCATCAAGCCCGGACGACGAACGTGCGTGTCTTTGC
CGGCGAGCCGCCGCTGGGATAGATCCAAGCGACTAGAGGCGGAGTCAATATCTACATGCGGCGTGGAGATGTTGTCGGGG
CTATGCGGTCCGGCACCCGGCCAATCCATGGCAAGGCGCAACCTCCTGCGGCTGGATGCGCTCAAATCCGGCGGCCGGGC
TGGACAACAAGGCGACTGAGAAAATGGGAGCTGCTATGGCATGGGTAGAGGGTGAGGGCGGCCCGGCTGGACAGCGATGC
GGCGGCTATGGCGGAGGAGTGGGGGCGGGGGCGGCTGGAGCTGGGGAGAATAGAAAAAAGGGGCGCCTGTGTCGCCGACG
GCGAGCAAGAAAGAACAAGGGCACGCGTCCCGTTCGTCTGCATGTGTCCGTTCCGACGCAAAAGCAGCCCAAATTTATGC
CGGGAATAGGTCAAAAGCGGACGAAAAAGGGACGTTTGCTTCCGCACGTTGGGCCATATTTTATGTTCATTTACCCTCAA
ACGGACGCGGCCGGACCTATGCGTTGAAGTTGGCCTAACAATCACCGAACATCTATCAATGGTGGTATCCGTCATCCCAA
TTCAGCTTCCTTTTCAGCCGAGGACCCCTCGCCGAACCTCTATTGTAGCGGGGCCAATCAAAAGCGTGAAATCAGTCATA
TGTATGCAAATCAAGCGAAAAACCTAGGGTTTTTTCTTCCTCTGGCGGCGTGATCGCCGAGAGTATCTCCCTTCT---GA
TCGATCTCCCCTCTTCCCTTCCTCTCCCTCGAAGACTTCAGGCTGACCCAGGGGGAACCTTGCGTTCCTTCCAGGCCTTG
GTGGACAAGGGCAGTGGGG-AGCAGAGGGTCCTAGATCTACGACATGGCAGTGGAAGGAAGTGACAGAGAGAAGGGAAAG
AAAGTTGAGGATGTAGATGATCTACTAGCGAGACTTGACTTGCATGAAGATGATGGAGATGACTTCGTGTGGGAAGATGA
TCCGGAGGTCCCAAAGATCCAAGCAAAGTGGCTAGCTATTGCTAAGG-TCATACTACTAAGGGGTTTAGTCCGTCGGCCC
TTTACGCGGATATGAGGTCTGCGTGGAATCCGGCAAAAGTTGTGCGTTGGAGGATGATTAAGAATAATTTGTTTACAGTA
CAGTTTGGATGCCTCAGAGATTGGAACATGGCAATGATTAATGGACTGTGGCTTTTCAGGAATCAAGCGGTGATCTTGAA
GGAGTACGATGGATTTACGAATCCCAAATCAATCAGTCTGGACAGGGTTGAAGTATGGGCAAGAATCTTGAAATTGCCGG
ACAACTATCTTCATGAAGCTATGATAAAAGGAATGTGCAAAAAGATAGGAGAAATCCTGGAGGTGCAGATACAATTACCG
GCGGGTTATGTCGGCAAGTTTGTAAGGATAAAGGTGAACCTTAATGTGCATAAGAGGCCGGAGCGTTTTGTCTCAATTAC
CAAGGGGGGCAAGAAAGATTGGTATCAAGTCCATTATGAGAAGATGCCGATCTACTGCAACTACTGTGGATAAATCGGGC
ATTGGCATGAGGAATGTGGGACTGGTGAACATGACGTGTCCAAGTTTGAGTGGGGAGACTTTATGATGGCTGATGAATGG
AAGCGACATAGATCTAGCCGCGGTGCCAGAGCAGGAAGAGGTCGAGGCCGAGGGAGAGCTCCTTTCGGCAGAGGGTTTGC
AAGTAAAGATGGAAATGATCCTGAGTGGTCACGCTCAAATGGAGCAAACACGAGTTATGATGTCCAAACTAGCTGGAGAT
GGAATGCATCATATGGAGTTCAGGGGGAACCTACAGATAAGACCCCCGTGCAGCAGGACACTGGTTCATTAGGCCTGGAA
GTGG-TATGGTTGAGAAGGAGCACAGTGTAAGGAAGAGGTTGGCAACTGATTCTGTGTCAGGAGGGATGCCAAGCCCCCA
ACGATCTATGGTTGTGGTAGACCCAAAACCTAAGGTTTCCAACATGGTTGAGATGTTTGATGGCAGCAATGAGAAGGGGC
CATCCTCTACACCCCAGAAAAATGCAAACAGAAAGAAACATAAAGGGGAGGATGATGGAGTAAATGGAAGTGAAAACTCG
GATAATGATAATGCAAGATCGGCAGCACTCTTCATGAGTGACCGCCGGGCGCAATGAATATTTTAAGCCTGAACTGTCGG
GGCTGCGGGCGGTCCGAGACAGTTCAAGAAATCTGCAACTTGGTACAGTTGCATCGCCCCGGTTTGG-TTTTTCTCTCGG
AGACCAAATTGTCTGCTACGAGAGCGCAGGAGATGAGATTCTGGTTGGGTTTCAGGCATGGTTTTGGTGTCAGTAGTGAG
GGATTGAGCGGAGGCCTGGTATTATTTTGGAATAGTGATTCAGTGGTCTCCCTAAAATCCTATAGTAGGACACACATCGA
TGTTTTTGTTCAGAACGATGCCACGGGAAGTAGGGAGTGGCGATTCACAGGATTCTATGGGGATCCGAGGAGATCAAGGA
GGAAAATGAGCTAGGAACTGTTAACGTTCCTTAGA
>chr7A_814
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-------------AGCAAAAAACCTAGGGTTTAGGCTTCCTCTGGCGGCGCGATCGCCGAGAGTATCTTCCTTCTTGTGA
TCGCTCTCCCCTCTCCCTCCCCCCCTCGAATAC----TCAGGCTGATCCAGGGGGAACATTACGTTCCTTCCCGGCCTTG
GTGGACAAGGGCTGGTTGGAAGCAGCGGGCGCAAGATCTATGACATGGCGGTGGAAGGAAGTGACAAAGGGATGGGGAAG
CAAGATGAAGACGTGGACGAGCTGCTCAACCGACTAGATCTGCATGAAGATGATGGGGATGACTTTGTGTGGGAGGATGA
TCTGGATGTCCCAAAGATTCAAGCAAAGTGGCTAGCTATTGCTAGGGTTCATACCAGTAAGGGATTTAGCCCATCGACCC
TTTATGCGGATATGCGGGCTGCATGGAATCCGGCAAAAGTTGTGCGTTGGAGGATGATCGGGAACAATTTGTTTACATTG
CAGTTTGGTTGCCTCGGAGATTGGAAGACGGCGATGACTAATGGCCCGTGGCTATTCAGAGATCAAGCGGTGATTCTGGT
GGAGTATGACGGATTCACGAACCCTAAATCAATCAATCTGGATAGGGTTGCGGTATGGGCGAGAATTTTGAAACTGTCGG
ACAACTATATGTATGAGGTTGTGATAAAAGGGATGTGCAGGAAGGTAGGAGAGATTCTGGAGGTGCAGATACAATTACCG
GCCGGTTACATCGGCAAGTTTGTAAGAATAAAGGTGAATCTTAATGTAAACAAGAGGCTGGAGCGTTTTGTGTCAATTAC
TAAGGGGGGCAAGAAATATTGGTATCAAGTCCAATACGAGAAGATGCCGATCTTTTGCAACCATTGTGGATTGATCAGAC
ATTGGCATGAGGATTGTGGGACTGGTGAACATGACATATCCAAGTTTGAGTGGGGAGATTTTATGATGGCTGATGAATGG
AAGCAACGTGGGAATGGTCGTGGTGCAAGCGGAGGAAGGGGTCGAGGCCGAGGGAGAGCTCCCTTCGGCAGAGCATCTGA
AGGTAGAAATGAAAAGGATCATGAATGGATGCTCTCTAATGGTGCAAATACAAGGTATGATGGCCAAACTAGTTGGAGGT
TTAATGCAATTTTCCAGGATCAGGTGGAACCTACAGATCAGCATCCGGTACAGCAGGACCCTAAGGCATCAGGTCTGGAT
GTGACCATGGGTGACAATGAACAAGGGGCTAGGAAAAGGTTGGCGGCTGACTTTGTATCAGGAGGGGAGCTAAGCCCCAA
TAAGTCTATGGTTGTGGTTGACCCGAAATCTAAGGTTTCCACTATGGTAGGGACGTTCGATGAAAACAGTGAGAGGGACC
CTTCTTCGACACCCCAGAAGATTGCAAATCGGAAGAAACATAAAGCCGAGGATGGGGAAGTAAATATATGTGAGGAATCG
TCTAAGTACAATGCAGGATCGGCAACACTCCTCGAGAGTGACCGCCGGGCGCAATGAATATATTAAGCCTGAACTGTCGG
GGCTGCGGGCGGCCTGAGACTGT----------------------CAGTTGCATCGCCCCAGTTTGG-TTTTTCTCTCGG
AGACCAAATTGTCTGATACGAGAGCACAAGATATGAGATTTCGATTGGGTTTCAGGCATGCTTTTGGAGTCAAGAGTGAG
GGATTAAGCGGCGGAATGGTACTATTCTGGTATAGTGATTCAGTGGTCACCCTAAAATCATACAGCAAGACTCACATTGA
TGTTTTTGTTCAGAATGATGCCACAGGTACTAGGGAGTGGCGGTTCACAGGTTTCTATGGGGAGCCGATGGGATCAAGGA
GGAGGAGGAGCTAGGAACTATTAACGTTCCTGAGA
>chr2A_962
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----ACAAGGGCAGTGGGG-AGCAGAGGGTCCCAGATCTACGACATGGCAGCGGAAGGAAGTGACAGAGGGAAGGGAAAG
GAAGTTGAGGATGTAGACGATCTACTAGCGAGACTTGACTTGCATGAAGATGATGGAGATGAATTCGTGTGGGAAGATGA
TTCGGAGGTCCCAAAGATCCAAGCAAAGTGGCTAGCTATTGCTAGGGTTCATACTACTAAGGGGTTTAGTCCGTCGGCCC
TTTACGCGGATATGAGGTCTGCGTGGAATCCGGCAAAAGGTGTGCGTTGGAGGATGATTGAGAATAATTTGTTTACAGTA
CAGTTTGGATGCCTCGGAGATTGGAACATGGCGATGATTAATGGACCGTGGCTTTTCAGGAATCAGGCGGTGATCTTGAA
GGAGTACGATGGATTTACGAATCCCAAATCAATCAGTCTGGACAGGGTTGCAGTATGGGCAAGAATCATGAAATTGTCGG
ACAACTATCTTCATGAAGCTGTGGTAAAAGGAATGTGCAGAAAGATAGGAGAAATCCTGGAGGTGCAGATACAATTACCG
GCGGGTTATGTCGGCAAGTTTGTAAGGATAAAGGCGAACCTTAATGTGCATAAGAGGCTGGAGCGTTTTGTCTCAATTAC
CAAGGGGG-CAAGAAAGATTGGTATCAAGTCCATTATGAGAAGATGCCGATCTTCTGCAACTACTGTGGATTGATCGGGC
ATTGGCATGAGGAATGTGGGACGGGTGAACATGACGTGTCCAAGTTTGAGTGGGGAGACTTTATGATGGCTGATGAATGG
AAGCAACATAGATCTAGCCGCGGTGCCGGAGCAGGAAGAGGTCGAGGCCGAGGGAGAGCTCCTTTCGGCAGAGGGTTTGC
AGGTAAAGATGGAAATGATCCTGAGTGGTCGCGCTCAAATGGAGCAAACACGAGTTATGATGGCCATACTAGCTGGAGAT
GGAATGCATCATATGGGGTTTAGGGGGAACCTACAGATAAGATATCCGTGCAGCAGGACACTGCTTCATTAGGCCTGGAA
GTGGATATGGTTGAGAAGGAGCACAGTGTAAGGAAGAGGTTGGCAGCTGATTCTGTGTCAGGAGGGATGCCAAGCCCCCA
ACGATCTATGGTTGTGGTAGACCCAAAATCTAAGGTTTCCAACATGGTTGAAATGTTTGATGGCAGCAATGAGAAGGGGC
CATCCTCTACACCCCAGAAAAATGCAAACAGAAAGAAACATAAAGGGGAGGATGATGGAGTAAATGGAAGTGAAAACTCG
GATAATGATAATGCAAGATCGGCGGCACTCTTCGTGAGTGACCGCCGAGCGCAATGAATATTTTAAGCCTGAACTGTCAG
GGCTGCGGGCGGTCCGAGACAGTTCAAGAAATCTGCAACTTGGTACAGTTGCATCACCCCGGTTTGGTTTTTTCTCTCGG
AGACCAAATTGCCTGCTACGAGAGCGTAGGAGATGAGATTCCGATTGGGTTTCAGGCATGGTTTTGGTGTCAGTAGTGAG
GGATTGAGCGGAGGCCTGGTATTATTTTGGAATAGCGATTCAGTGGTCTCCCTAAAATCCTATAGTAGGACACACATCGA
TGTTTTTGTTCAGAACGATGCCACGGGAAGTAGGGAGTGGCGATTCACAGGATTCTATGGGTATCCGATGAGATCAAGGA
GGAAAAGGAGCTGGGAACTGTTAACGTTCCTTAGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS---S---------------SSS---------------S-----------------S-----------
---S----------S--SSS--S-SS-SSSS-SSSSS---------S-----------S--S----------S-------
--------------------------------S------------------------------------S----------
S----------------S--------------------------------------------------------------
--------------------------------------------S-----------------------------------
-----------------------------------------------------------S--------------------
---------------S----------------S-------------S---------------------------------
--------------------------------------------------S-------------------------S---
--------------------S------------------S----------------------------------------
----------------------------------------------------------S---------------------
-----------------------------------------------------S-----------------SS-------
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----S---------------------------------------------------------------------------
-S----------------------------S-------------------------------S-----------------
----------------S-------------------------SS-------------------S----------------
---------------------------------------------S----------------------------------
----------------------------S---------------------------------------------------
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---------------------------------S----------------------------------------------
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-----------------------------------------S-S------------------------------------
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--------------------------------------------------------------------S-----------
------S----------------------------
>forward_565
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-----------------------------------------------------------------AGCCCAAATTTATGC
CGGGA---------------------------------------------------------------------------
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>reverse_1672
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-----------------------------------------------------------------------AAATCGGGC
ATTGGCATGAG---------------------------------------------------------------------
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-----------------------------------
>forward_911
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-----------TCTTCCCTTCCTCTCCCTCG-------------------------------------------------
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>reverse_2442
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-----------------------------------------TGGTTGGGTTTCAGGCATGG-------------------
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-----------------------------------
