>input_sequence_72294
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--------------------------------------------------------ATGGCGTCCTCGCGCCGCGCCTTG
CCCGTGGCGACCCTGGCCCTCCGGGTCCTCGCGCTGCTCCTCCTCGCGGCCTCCATCATCATCATCGCCACCGCTGAACT
CCAGGACAGCATCTTCGAGCCGCAAGGCATCATCACGTTCAAAGATATATACGCGTACCAGTAAGAAAGATCCACCAAAC
TAAATCTCCGTTCTGGCC-GGCCGGCGACGGCATCTCAAATTGTCAATACATGTTCGACTGTCAGGTATGTGCTGGCCGT
GGGTGTCATCGGGTGCGCCTACAATCTGGTGGCGGCTTTGTTCGTGGCGATCAACGTCGCCGGGGGGAGGAAGATGATCG
GCGGCGGCGAGGCCGGCACCGTGCTCCTCATCTGCGCCGACGTCGTAAGTATCTATCAACTCCAACAAGTCCCCTGTACG
CTGCCTAG-------TGGTTTCTCATTTTATTTTTGCCTAAAAAAATGAAGGTGTGCGCTGTGCTGGTCGCCACGGGAGG
GGCGGCGGGCTTGGGTATAACGGTGGAGGCCCAGCGGCAGATTGGCAAATCCTTGGATTCAGTCTCCAAGACATTCTTCA
TCAGGGTTGACATCTCCTGCGGCGCGCTGTTGCTCGCATCCCTCTGCCTCGTGTTCATCGTCATGCTATCCTCTTTCTCA
CTCACCAAGTAG--------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G521900
TTTGTCTTTTTCGTTGTGAAGTCAACGTAGGTTTTTTTTTGTGAAAATTTATATACTAGTGTGCAAGTAAGTCAAGTTTA
ATCTAAAAATACTTTTAAAGTACTTTGACTTTTTGTTTAATTATTAAAAAAATACCCCATATAGGGTGTATATACATGCG
AGAGCCAAAGGGTATTTCCCTACCATATAGTCCATTCGTTCCAGTACGGAGTGTTAGGGTTTGCTAGGAAGCCGTTGACA
AACAGTTGCACTATGATGATGTAAATCTTGATACAAATCATGACCACAAGTTATTCGAAATCTATGAATCTAGTAACATC
AACTTCATGTCACATAAAGCACATAATAATAATGGAGTAATTGCTGATCAAACGGTTGTATCAAATCATTAGACGGTTGG
TAATTTGGAACGGAGGGTGTACATATGTATGGTTTGACTCTGTCAAGCCACACCGTCCAGTCGTCCAACTCAGCTTCATC
TCCAATTAATCATCTATCCTTTTCACTGTCCATATCAGTGCCAGCACATACTATCATGGATAAAAAATGCAAACC-----
--------TACGTAATGTGTTACGTAAAACCTACGTTTCTTTCCTTTCTCAACCAATCATCTCCCACCTGAATTTCGCGG
GGTGGGTCTGGGTCCTTTTTTCTTCCAATCAAAACAGGCCAAGTCAGCGCGTACATAAGTTTCGTAAGAATTTTGAAGTA
GGTGTAGCAAAACTCATCATGGATAGTACAAATGTAA-CTTTGCGACCATCTCCACCGAGCACCGATCCAGACAAGGACA
TCCTTACGCGGGCACCCGGCCGGCTCTTCTTGGGCGATCAAAACAAGACGCTGTACGTGTTTGTGTGAGTGAGATGCTGT
TGTTTGACGACCAGATCAGCGCCAGCCTGCTAGCTCGCTCTATATGTATCCTTCCGGTCAAGTGATCAGCCACCATTGCA
GCAGCAGAAGCTCGTAGCTCGCAAGATCACGTACATC--TGTGCCGATCGTCAACAATGGCGTCCTCGCGCCGCGCCTTG
CCCGTGGCGACCCTGGCCCTCCGGGTCCTCGCGCTGCTCCTCCTCGCGGCCTCCATCATCATCATCGCCACCGCTGAACT
CCAGGACAGCATCTTCGAGCCGCAAGGCATCATCACGTTCAAAGATATATACGCGTACCAGTAAGAAAGATCCACCAAAC
TAAATCTCCGTTCTGGCC-GGCCGGCGACGGCATCTCAAATTGTCAATACATGTTCGACTGTCAGGTATGTGCTGGCCGT
GGGTGTCATCGGGTGCGCCTACAATCTGGTGGCGGCTTTGTTCGTGGCGATCAACGTCGCCGGGGGGAGGAAGATGATCG
GCGGCGGCGAGGCCGGCACCGTGCTCCTCATCTGCGCCGACGTCGTAAGTATCTATCAACTCCAACAAGTCCCCTGTACG
CTGCCTAG-------TGGTTTCTCATTTTATTTTTGCCTAAAAAAATGAAGGTGTGCGCTGTGCTGGTCGCCACGGGAGG
GGCGGCGGGCTTGGGTATAACGGTGGAGGCCCAGCGGCAGATTGGCAAATCCTTGGATTCAGTCTCCAAGACATTCTTCA
TCAGGGTTGACATCTCCTGCGGCGCGCTGTTGCTCGCATCCCTCTGCCTCGTGTTCATCGTCATGCTATCCTCTTTCTCA
CTCACCAAGTAGCTAGCATCGGCCTATCTGCTTTAGAAATTTGTTTAAATTTCTGGTGTGTCCAAGATTGAGGGTTTCAG
TTCTTATCTGGTGGCCTGCGGATGGGGTGTGGATCTTGCATGATCCCTGGCTGGGCTGTACCTGGCCGTCGTGCTTGCAG
TCTGTAAGTAGACTTTGGTAGAACTTGCCTGGCGTAGCTTTTGGTTCTAGTTGGTTGGCTGTAGCGATATTAGACCAGTT
GGTTTTATCATATATGAAAAATTGAAAATCGAAGAGGGTGGCCTCTATTTTCATTAGAAAAAACTAATAGCTAGTGATAT
TGTTTTAGACTTCTTTTTTTTTTGCTGGCCACTGTTTTCAATGACGTAAAAAGGAACCCTTTATAATTTGTATTTTTGAA
AGGTACGGTGCGCATTATTTTTCTTTTAAGGAAAGATGTGTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNACATTAAAACTGAACACTTTTCATGCCCTCTCAGGCCATCAGTGTCCGTAGCC
ATCGGATCATCAATCTTGGGCATTTTCGGCCGTTAGATTTACTGTCAATCGCTCCTCATCTGGCCTCGTTCGTCATGGGC
CGCTGCTCTGGTCGCTTTTTCCGGTGTCTCAGATTAAATTGGGCCTAACGGGCCTGCAGCACCATCCCCTTCGTGAAGCC
ACCGTTTTGTTCCCAAGACCAAACGCCTCCCACACCCTTCGCCTGGCGGCTG
>chr3A_338
AGT-----------------------------------------------------------------------------
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--------------------ACATACTAATAATGGAATAATTACTGATCAAACGGTTGTATGAAATCATTAGACGGTTGG
TAATTTGGAACAGAGAGTGTACATATGTATGGTTTGACTCTGTCAAGCCACCCCGTCGAGTCGTCCAACTCAGCTTCAAC
CCCAATTAATCATCTATCCTTTTCACTGTCCATATCAGTGT---CACATACGATCATGGATAAAAAATGCTAACC-----
--------TACGT-------------AAACCTACGTTTCTTTCCTTTCTCAACTAGTCATCTCCCCCATGAATTTCATGG
GGTGGGCCTGAC-CCTTTTTTCTTCCAACCAAATCAAGCCAGGTCAGCTCATACATAAGTTTCGTAAGAATTTTGAAGTA
GGTGTAGCAAAACACATCATGGATGGTACAAATGTAA-CTTTACGACCATCTCCACCGAGCACCGATCCAGACAAGGACG
TCCGTACTCGGTTACCCTGCCGGCTCTTCTTGGGCGATCAAAACAAGAAGCTGTGCGTGTTTGTGTCAGTTAGATGCTGT
TGTTTGACGACCAGATCAGCGCCGGCGCGCTTGCTCGCTCTATATGTACCCGTCCGATCAAGTGATCAACCACCATTGCA
GCAGCAGAAGCTCGTAGCTCGCAAGATCATCTGCATCTGTGTGCCGATCGACAAAAATGGCGTCCTCGCGTCGCGCCCTG
CCCGTGGCGACCCTGGCCCTCCGGGTCCTGGCGCTGCTCCTCCTCGCGGCCTCCATCATCATCATCGCCACGGCTGAACT
CCAGGACAGCGTCTTCGAGCCGCAAGGCATCATCACGTTCAAGGATATATACGCGTACCAGTAAGAAAGATCCACCAAAC
TAAATCTCTGTTCTGCCC-GGCCGGCGACGGCATCTCAATATC--------TGCTTGACTGTCAGGTACGTGCTGGCCGT
GGGTGTCATCGGGTGTGCCTACAATCTGGTGGCGGCTTTGTTCGTGGCGATCAACGTCGCTGGGCGCAGGAAGATGATCG
GCGGCGGCGAGGCCGGCACCGTGCTCCTCATCTGCGCGGACGCCGTAAGTATCTATCAACTCCAACAAGTCCCCTGTACG
CTGGCTAG-------TGATTTCTCATTTTATTTTTGCCTAAAAAAATGAAGGTGTGCGCCGTGCTGGTCGCCACGGGAGG
GGCGGCGGGCTTGGGTATCACGGTGGAGGCCCAGCGGCAGATCGGCAATTTCTTGGATTCAGGCTCCAAGACATTCTTCA
TCAGGGTTGACATCTCCTGTGGCGCGCTGTTGCTCGCATCCCTATGCATCGTGTTCATCGTCATGCTCTCCTCTTTCTCA
CTCACCAAGTAGCTAGCATTGGCCTATCTGCTTTAGAAATTTGTTCAAATTTCTGGTGTGTCCGAGATTGAGGGTTTCAG
TTCTTATCTGGTGGCCTGCGGATGGGGTGTGGATCTTGCATGATCCCTGGCTGGGCTGTACCTGGCCGTCGTGCCTGCAG
TCTGTAAGTAGACTTTGGTAGAACTTGCTTGGCGTAGCTTTTGGTTCTAGTTGGTTGGTTGTAGCGGTAAAAGACCAGTT
GATTTTAT--TATATGAAAAATTAAAAATCGAAGAGGGTGGCCTCTATTTTCATTAGAAAAACCAAGTAGCTAGTGATAT
AGTTTTAGACTTCTTTTTTTC--ACTGGCCATTGTTTTCAATGACGTAAAAAAGAGTCCTTTATCGTTTGTATTTTTGAA
AG------------------------------------------------------------------------------
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>chr3D_375
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------------------------------------------------------GTTGTACCAAATCAGTAGACGGTTGG
TAATTTGGAATGGAGGGTGTACATATATAGGGTTTGACTCTGCCAAGCCACCCCGTCCATTCGTCCACCTCAGCTTCATC
TCCAATTAATCATCTATCCTTTTCACCGCCCATACTATCATTCATGGATAT--------ATATAAAATGCTAGACATACG
TAACATGTTACGT-------------AAACCTACGTTTGTTTCCTTTCTCAACTAATCATCTCCCCCCTGAATTTCATGG
GGTGGGCCTGAC-CCTATTTTTC--------------------------------TAAGTTAAATAAGAATTTTTATGTA
GGTGTAGCAAAACTCATCATGGATAGTACAAATGTAAACTTTACGACCATCTCCGCCGAGCACCGATCCAGACAAGGACG
TCCGTACGCGGGCACCAGGCCGGCTCCTCTTGGGCGATCAAAACAAGAAGCTGTGCGTGTTTCTGTGAGTGAGATGCTGT
TGTTTGACGACCAGATCAGCGCCGGCGCGCTAGCTCGCTCTATATGTATCCTTCCGATCAAGTGATCAACTACCATTGCA
GCAGCAGAAGCTCGTAGCTCGCAAGATCACGTGCATC--TGTGCCGATCGACAAAAATGGCGTCCTCGCGCCGCGCCCTG
CCCGTGGCGACCCTGGCCCTCCGGGTCCTCGCACTGCTCCTCCTCGCGGCCTCCATCATCATCATCGCCACCGCTGAACT
CCAGGACAGCATCTTCGAGCCTCAAGGCATCATCACGTTCAAAGATTTATACGCATACCAGTAAGAAAGATCCATGAGAC
TAAGTTTCACTTCTTTACTGGCCGGCGATGGAATCTCATTATC--------TGTTCGACTGTCAGGTACGTCCTGGCCGT
GGGTGTCATCGGGTGCGCCTACAACCTGGTGGCGGCTTTGTTCGTGGCGATCAATGTCGCCGGGAGGAGGAAGATGGTCG
GCGGCGGCGAGGCCGGCACCGTGCTCCTCATCTGCGCCGACGTCGTAAGTAT-TATCAACTCCAAGAAGTCCCATGTACG
CACTGACTAGTGATTTGATTTCTCATTTGATTTTTGATGTTGAAT-TGAAGGTGTGCGCCGTGCTGGTCGCCACGGGAGG
GGCGGTGGGCTTGGGTCTGACGGTCGAGGTCCAGCGGCGGCTCGGTGTTATCTTGGATTCAGTCTCCAAGACATTCTTCA
TCAGGGTTGACATCTCCTGCGGCGCGCTGTTGCTCGCATCCCTATGCATCGTGTTCATCGTCATGCTCTCCTCTTTCTCA
CTCACCAAGTAGCTAGCATCGGCCTGTCTGCTTTAGAAATTTGTTTAAATTTCTGGTGTTGCCAAGATTGAGGGTTTCAG
TTCTTATCTGGTGGCCTACGGATGGGGTGTGGATCTTGCATGATCCCTGGCTGGGCTGTACCTGGCCGTCGTGCCTGCAG
TCTGTAAGTAGACTTTGGTCGAACTTGTTTGGCGTAGCTTTTGGCTCTAGTTGGTTGGCTGTAGCGGTAAAAGACCAGTT
AATTTTAT--TATATGAAAAATTGAAAATCGAAGAGGGTAGCCTCTATTTTCATTAGAAAAACCAAGTAGCTAGTGACAT
AGTTTTAGACTTCTTTTTTAC--GCTGGCCATTGTTTTCGATGACGTAAAAAAGAGCCCTTTATCGTTTGTATTTTTGAA
AGTTGCGTGA----------TTTTTTTATGGAAAGATGTGTGAAAT----------------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-----S----------S-----S-------------------------------------
---------------------------------------------------S----------------------------
----------------------------------------SSSS-------S------------------S---------
-------------SSSSSSSSSSSSS---------------------------S-----------S----------SS--
------S---SSS---------------S----S--S----S------S-S-----------------------------
------------------------------------------S------------------------------------S
---S--------------------------------------------S-----S-------------------------
-----------------------S--SS----------------------------S-----------S-----------
--------------------------------S-----------------S---S----------------------S--
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--------S------S-----------------------SS-SSSSSSSSS-----------------S-----------
----------------------------------------------------------------S---------------
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---S-------------S-----------------------------------------S--------------------
------------------S-----------------------S-----S-S-----------------------------
-------------------------------------------S---S-------------------S------------
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--------------------------------------------------------------------------S-----
----------------------------S-------------------------------------S--SS---------
-S------SS----------------------------------------------------S-S-S-------------
S-------------------SSS--------S--------------------S--S--------SS--------------
--S-S--SSSSSSSSSSSSS--S-----S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_249
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---------------------------------------------------------------------AGCCGTTGACA
AACAGTTGC-----------------------------------------------------------------------
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>reverse_1644
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-------------------------------------------CTGCCTCGTGTTCATCGTCA-----------------
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>forward_250
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----------------------------------------------------------------------GCCGTTGACA
AACAGTTGCA----------------------------------------------------------------------
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>reverse_2023
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----------------------TGCTGGCCACTGTTTTCAATG-------------------------------------
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----------------------------------------------------
