>input_sequence_72289
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------------------------------------------------ATGGCATCCTTCTACGCAGCCATAGGTTTCAT
CCTCCCCTTTCTCCTCACCATCGCATTGCCCCAATCTACTGGTTCCCCTCCTGCGGCGCCGTCGACCACCGGGTCATTAT
CCATCGAGGACGCCTGCAAGCAGACCACCAAGCTCTACGACCTCTGCATGGCGACGCTCTCCCCGGACCGGTCCTCCTTG
ACGGCTGATGCTGTGGGCCTGACCAGGGCGGCCATCCTGGCTGTCCAGAAGAACGCGTCCGAGACAGCCACATACCTCAC
GAACATCGATGAAGATGACAACTTCAATAAAACGGCGCAGCTGCAACAATGCCTCGAGGGCTGTGGGGAGCGGTAAGCAG
CTAGCTCTGACGTACATGTGTGATCACCAAAGGCAACTTTAACGATGAATCATGGATTGCATGCTTTATCGATCATATAT
ATGCATGCAGGTATGAGGCGGCCGTGGAGCAGCTGGCAGACGCGACAATCGCGCTGGACATGGGGGCATACGACGAGTCG
CAGGTGCTGGTATCTGCAGGCCAGGCGGAGGTGAAGCTGTGCCAGAAGGGGTGCCAGGACTCACCAGAACACCGGAGCAT
CCTCATGGCGCGCAACACCGAGGTCGACCAGCTCTGCAATATCACTCTCGCTATCGCCAAGCTTATCCCCCGGTGA----
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>chr2A_1_TraesCS2A01G518500
TTACTCTAGAGTGGAAATGACAGAACAAAAGGAAATGTTAAAAACTGCATAGCATCTTGGTAGGATAGGAGTAAGAAAAA
AGAGGCAAATAACGCCTACTTGTAGGGCACAGTTCAGTTCAGGATTTGTCAAAAGATCTAACGCTTTCTCAGCGTCATTT
TCATTTATGCGGAGTGCTTCTGCAGCAAGGTACTTCTCAAACCTGCAAAATTAAAACTGATCGGTTACAAACAGAAACAG
GACAAGTATCAGCATGAAGTTTCCTATACTACACTTTCTCCACAAGACAACTAAAGACACGTCTAAATCAATGTATGGCT
GCTAGGAATAGATGCGTGAAATCTAAATAACCTTTAGATCCATCTAAGATTTCGATTCCCAGTAAAAAAATAATATAAAA
AATGGGACCAAAAAAATAAATCCTATATTGCTTCATAAAACATAATCTTCCAATATTGCTTTATATAAACGAAAATGCAT
CAGTGCACTTGAGCGTGCAGCACACACTGGTGAGAATGCCCACTTACATGTTTTGAGAAGTTCTGACAAAACT--TATAC
ATGTACATTGTTGGATGTAGTTCGAATCTGCAAGTGTTGGTGCAAAAATAAAACTATCTATTTATGTGCTAGACAAAAAA
GACAAACTGTTTACATTTATAGTTGTTGTTTTACTTCTGTTGTTGTTTCTCATAAAAAGTTTAACCAGCTGAAAATGCTA
TC-TTTGCTACCTCTATGTGTCTGACTCTCTGTCACGCTATGTGTCTGACTCTCTGTCACGCGCACTCTGTGACACAACT
GCCAATATTCGCATTGGCTCTC---CTAATAAAGAGGTCCATGCTTTTCCTCTCCATCGTAAAGAATAACCCCTAAAAAT
GGACACGACGCAGGCACTTTCTGTTAACCTGTCTTTATTTAGGCAAACGCATTACCATATAAGTAGGACCTTGCATAGC-
-CCCGTCTAACTTGAGCAACATCGCAAGCGCGCAAACCAAACCTCCCAATGGCATCCTTCTACGCAGCCATAGGTTTCAT
CCTCCCCTTTCTCCTCACCATCGCATTGCCCCAATCTACTGGTTCCCCTCCTGCGGCGCCGTCGACCACCGGGTCATTAT
CCATCGAGGACGCCTGCAAGCAGACCACCAAGCTCTACGACCTCTGCATGGCGACGCTCTCCCCGGACCGGTCCTCCTTG
ACGGCTGATGCTGTGGGCCTGACCAGGGCGGCCATCCTGGCTGTCCAGAAGAACGCGTCCGAGACAGCCACATACCTCAC
GAACATCGATGAAGATGACAACTTCAATAAAACGGCGCAGCTGCAACAATGCCTCGAGGGCTGTGGGGAGCGGTAAGCAG
CTAGCTCTGACGTACATGTGTGATCACCAAAGGCAACTTTAACGATGAATCATGGATTGCATGCTTTATCGATCATATAT
ATGCATGCAGGTATGAGGCGGCCGTGGAGCAGCTGGCAGACGCGACAATCGCGCTGGACATGGGGGCATACGACGAGTCG
CAGGTGCTGGTATCTGCAGGCCAGGCGGAGGTGAAGCTGTGCCAGAAGGGGTGCCAGGACTCACCAGAACACCGGAGCAT
CCTCATGGCGCGCAACACCGAGGTCGACCAGCTCTGCAATATCACTCTCGCTATCGCCAAGCTTATCCCCCGGTGACCGG
ACTCTGCTCGCTCATGGTGGTATATGACTGCCATATTGCC-TTTGAAGACATGGTGGCTAGTGAATTAATTTATCTAGCA
GATGGGAGCCA------------GACCTTCTGTGTAAACTAGCTGAATAGCCATATTTTACTATGGCTAGATAACCATGC
TGCGCAACATATTTATGCTATCGTCGTCATACTCAGTCGGGTCCACACCAAAAGATTAAGTTAGTTCATTTCATTTTCTT
CAGTATACAAATTGACAATATGTGTTGCCCAAAATTGGCAGGTTTCACCTGTTCCAACATCATGCACCAACAATAAAACT
CTTTTTTTTTAACAACTAAAGTGTCCCTTTTGATTCAACTCAAATCATCAGGTGCATACTCGGTGCATCCAGGTGCAGAA
AATCCGCTCTCCATAGAACATGTCACATTGGATACAATGAAACATGAACGACATGGCAAAACTTACGATAACTAAGAAAA
TCATTCCGCACGAACGAAATGAACGAATTTCATTGCCTTTCATCACTAACATTGTTCCCTAATAAATATTTATTTCAACT
GAACAACACGTAGATTTTCAACTACACTTTCTTGACAATCTGGTAAAAAAGTTTTGAGTTTTTAGGGCCTGCTTGGTGCT
TGCGATTTTGGTGGCCTACTTAAAACAATCTATTTTGTTATTTTACATAGTACTAACTGACTGAGAGCCTCTTGTTTGGA
CTTTCAACCCATAACAAGCATAGTTCGCTAGAAGTGGCAAAGAGCCCAGTGACAAACATTGATGCAAAAGCATGGTGCAA
TAAAGCCAGATTGGTCATTAGGCATCTGATCCTCAAATGTAGGACTATGGGGATTTCATGATAAAATCAACATCTATTTC
TCAAATACATGTGATTCGTATAATATAAGACCAAAACACTCTTACCCGATAGTAGTCAAGCCTTTCAACTTCTGCATATC
AACTGCCTTGTTCATGGGAGTTTTACCATATCTCCTTTGTTCCCTAGGA
>chr2D_1
TTACTCTAGAGTGGAAATGACAGAACAAAAGGAAGTGTTAACAACTGCAGAGCATCTTGATAGGATAGGAGTAAGAAAAA
GGAGGCAAATAACACCTACTTGTAGGGCACAGTTCAGTTCAGGATTTGTCAAAAGATCTAATGCTTTCTCAGCATCATTT
TCATTTATGCGGAGTGCTTCTGCAGCAAGGTACTTCTCAAACCTGCAAAATTAAAACTGATCGGTTACAAACAGAAACAG
GTCAAGTATCAGCATGAAGTTTCCTATAATACACTTTCTCCACAAGACAACTAAAGACACGTCTAAATCATTGTATGGCT
GCTAGGAATAGATGTGTGAAATCTAAATAACCTTTAGATCCATCTAAGATTTCGATTCCCAGTTAAAAAAAGATATAAAA
AATGGGACCCAAAAAATAAATCCTATATTGCTTCATAAAACATAATCTTCCAATATTGCTTTATATAAACGAAAATGCAT
CAGTGCATTTGAGCATGCAGCACACACTGGTGAGAATGCCCACTTCCATGTTTTGAGAAGTTCTGACAAAACTTATATAC
ATGTACATTGTTGGATGTAGTTCGAATCTGCAAGTGTTGGTGCAAAAATAAAACTATCTATTTATGTGCTAGACAAAAAA
GACAAACTGTTTACATTTATAGTTGTTGTTT-ACTTCTGTTCTTGTTTCTCATAAAAAGGTTAACCAGCTGAAAATGCTA
TCTTTTGCTACCTCTATGTGTCTGACTCTCTGTCACGCTATGTGTCTGACTCTCTGTCACGCGCACTCTGTGACACAACT
GCCAATATTCGCATTGGCTCTCCTCGTAATAAGGAGGTCCATGCTTTTCCTCTCCACCGTAAAGAATAACCCCTAAAAAT
GCACACGACGCAGGCACTTTCTGTTAACCTGTCTTTATTTAGGCAAACGCATTACCATATAAGGAGGACCTTGCATGGCG
TCCCGTCTAACTTGAGCAACATCGCAAGCGCGCAAACCAAACCTCCCAATGGCATCCTTCTACGCAGCCATAGGTTTCAT
CCTCCCCTTCCTCCTCGCCATCGCATTGCCCCAATCTACTGGTTCCCCTGCCGTGGCGCCGTCGACCACCGGGTCGTTAT
CCATCGAGGACGCCTGCAAGCAGACCGCCAAGCTCTACGACCTCTGCATGGCGACGCTCTCCCCGGACCGGTCCTCCTTG
ACGGCTGATGCTGTGGGCCTGACCAGGGCGGCCATCCTGGCTGTCCAGAAGAACGCGTCCGAGACAGCCACATACCTCAC
GAACATCGATGAAGATGACAACTTCAATAAAACAGCGCAGCTGCAACAATGCCTCGAGGACTGTGGGGAGCGGTAAGCAG
CTAGCTCTGACGTACATGTGCAATCACCAAAGGCAACTTTAACGATGAATCATGGATTGCATGCTCTATCGATCATATAT
ATGCATGCAGGTATGAGGCAGCCGTGGAGCAGCTGGCAGACGCGACAATCGCGCTGGACATGGGGGCATACGACGAGTCG
CAGGTGCTGGTATCTGCAGGCCAGGCAGAGGTGAAGCTGTGCCAGAAGGGGTGCCAGGACTCACCAGAACACCAGAGCAT
CCTCATGGCGCGCAACACCGAGGTCGACCAGCTCTGCAATATCACTCTCGCTATCGCCAAGCTTATCCCCCGGTGACCGG
ACTCTGCTCGCTCATGGTGGTATATGACTGCCATATTGTCTTTTGAATACATGGTGGCTAGTGAATTAATTTATCTAGCA
GATGGGAGCCA------------GACCTTCTGTGTAAACTAGCTGAATAGCCATATTTTACTATGGCTAGATAACCATGC
TGCGCAACATATT-ATGCTATCGTCGTCATACTCAGTCGGGTCCACACCAAAAGATTAAGTTAGTTCATTTCATTTTCTT
CAGTATACAAATTGACAATATGTGTTGCCCAAAATTGGCAGGTTTCACCTGTTCCAACATCGTGCACCAACAATGAAATT
CATTTTTTTTCACAACTAAAGTGTCCCTTTTGATTCAACTCAAATCATCAGGTGCATACTCGGTGCATCCAGGTGCAGAA
AATCCGCTCTCCATAGAACATTTCACATTGGATACAATGGAACATGAACGACATGGCAAAACTTACGATAACTAAGAAAA
TCATTCCGCACGAACGAAATGAACGAATTTCATTGCCTTTCATCACTAACATTGTTCCCTAATAAATATTTATTTCAACT
GAACAACACGTAGATTTTCAACTACACTTTCTTGACAATCTGGTAAAAAAGTTTTGAGTTTTTAGGGCCTGCTTGGTGCT
TGCGATTTTGGTGGCCTACTTAAAACAATCTATTTTGTTATTTTACATAGTACTAACTGACTGAGAGCCTCTTGTTTGGA
CTTTCAACCCATAACAAGCATAGTTCGCTAGAAGTGGCAAAGAGCCCAGTGACAAGCATTGATGCAAAAGCATGGTGCAA
TAAAGCCAGATTGGTCGTTAGGCATCTGATCCTCAAACGTAGGACTATGGGGATTTCATGATAAAATCAACATCTATTTC
TCAAATACATGTGATTCGTATAATATAAGACCAAAACACTCTTACCCGATAGTAGTCAAGCCTTTCAACTTCTGCATATC
AACTGCCTTGTTCATGGGAGTTTTACCATATCTCCTTTGTTCCCTAGGA
>chr2B_1
TTACTCTAGAGTGGAAATGACAGAACAAAAGGAAGTGTTAACAACCGCATAGCATCTTGGTAGGATAGGAGTAAGAAAAA
AGAGGCAAATAACGCCTACTTGTAGGGCACAGTTCAGTTCAGGATTTGTCAAAAGATCTAACGCTTTCTCAGCATCATTT
TCATTTATGCGGAGTGCTTCTGCAGCAAGGTACTTCTCAAACCTGCAAAATTAAAACCGATCGGTTACAA----------
------------------------------ACACTTTCTCCACAAGACAACTAAAGACACGTCTAAATCATTGTATGGCT
GCTAGGAATAGATGTGTGAAATCTAATTAACCTTTAGATCCATCTAAGATTTCGATTCCCAGTAAAA--ATAAAATAAAA
AATGGGACCAAAAAAATAAATCCTGTATTGCTTCATAAAACATAATCTTCCAATATTGTTTTATATAAACGAAAATGCAT
CAGTGCACTTGAGCGTGCAGCACACACTGGTGAGAATGCCCACTTCCATGTTTTGAGAAGTTCTGACAAAACT--TATAC
ATGTACATTGTTGGATGTAGTTCGAATCTGCAAGTGTTGGTGCAAAAATAAAACTATCTATTTATGTGCTAGACAAAAAA
GACAAACTGTTTACATTTATAGTTGTTGTTTTACTTCTCTTGTTGTTTCTCATAAAAAGTTTAACCAGCTGAAAATGCTA
TCTTTTGCTACCTCTATGTGTCTGACTCTCTG------------------------TCACGCGCACTCTGTGACACAACT
GCCAATATTCGCATTGGCTCTCCTCCTAATAAAGAGGTCCATGCTTTTCCTCTCCATCGTAAAGAATAACCCCTAAAAAT
GGACAAGACGCGGGCACTTTCTGTTAACCTGTCTTTATTTAGGCAAACGCATTACCATATAAGTAGGACCTTGCACGGCG
TCCCGTCTAACTTGAGCAACATCGCAAGCGCGCAAACCAAACCTCCCAATGGCATCCTTCTACGCAGCCATAGGTTTCAT
CCTCCCCTTCCTCCTCACCATCGCATTGCCCCAATCTACTGGTTCCCCTGCCGCGACGCCGTCGACCACCGGGTCATTAT
CCATCGAGGACGCCTGCAAGCAGACCGCCAAGCTCTACGACCTCTGCATGGCGACGCTCTCCCCGGACCGGTCCTCCTTG
ACGGCTGACGCTGTGGGCCTGACCAGGGCGGCCGTCCTGGCTGTCCAGAAGAACGCGTCCGAGACAGCCACATACCTCTC
AAACATCGATGAAGATGACAACTTCAATAAAACGGCGCAGCTGCAACAATGCCTCGAGGACTGTGGGGAGCGGTAA----
--------------------------------GCAACTTTAACGATGAATCATGGATTGCATGCTTTATTGATCATATAT
ATGCATGCAGGTACGAGGCGGCCGTGGAGCAGCTGGCAGACGCGGCAATCGCGCTGGACATGGGGGCATACGACGAGTCG
CAGGTGCTGGTATCTGCAGGCCAGGCGGAGGTGAGGCTGTGCCAGAAGGGGTGCCAGGACTTACCAGAACACCGGAGCAT
CCTCATGGCGCGCAACACCGAGGTCGACCAGCTCTGCAATATCACTCTCGCTATCGCCAAGCTTATCCCCCGGTGACCGG
ACTCTGCTCGCTCATGGTGGTATATGACTGCCATATTGTCTTT-GAAGACATGGTGGCTAGTGAATTAACTTATCTAGCA
GATGGGAGCCAGATCGTGCCTCTGACCTTCTGTGTAAACTAGCTGAATAGCCATATTTTACTATGGCTAGATAAACATGC
TGCGCGACAGATT-ATGCTATCATCGTCATACTCAGTCGGGTCCACACCAAAAGATTAAGTTAGTTCATTTCATTTTCTT
CAGTATACAAATTGACAATATGTGTTGCCCAAAATTGGCAGGTTTCACCTGTTCCAACATCGTGCACCAACAATAAAATT
CATTTTTTTTCACAACTAAAGTGCCCCTTTTGATTCAACTCAAATCATCAGGTGCATACTCGGTGCATCCAGGTGCAGAA
AATCCGCTCACCATAGAACATGTCACATTGGATACAATGAAACATGAACGACATGGCAAAACTTACAAATACTAAGAAAA
TCATTCCGCACGAACGAAATGAACGAATTCCATTGCCTTTCATCACTAACATTGTTCCCTAATAAATATTTATTTCAACT
GAACAAAACGTAGATTTTCAACTACACTTTCTTCACAATCTGGTAAAAAAGTTTTGAGTTTTTAGGGCCTGCTTGGTGCT
TGCGATTTTGGTGGCCTACTTAAAACAATCTATTTTGTTATTTTACATAGTACTAACTGACTGAGAGCCTCTTGTTTGGA
CTTTCAACCCATAACAAGCATATTTCGCTAGAAGTGGCAAAGAGCCCAGTGACAAACATTGATGCAAAAGCATGGTGCAA
TAAAGCCAGATTGGTCGTTAGGCATCTGATCCTCAAATGTAGGACTATGGGGATTTCATCATAAAATCAACATCTATTTC
TCAAATACATGTGATTCGTATAATATAAGACCAAAACACTCTTACCCGATAGTAGTCAAGCCTTTCAACTTCTGCATATC
AACTGCCTTGTTCATGGGAGTTTTACCATATCTCCTTTGTTCCCTAGGA
>SNPs
----------------------------------S------S--------------------------------------
-------------------------------------------------------------------------S------
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-S--------------------------S-----------------------------------------S---------
--------------S-----------------------------------------------------------------
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---------------------------------------------S----------------------------------
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---------S---------------------------------------S-S----------------------------
--------------------------S-----------------------------------------------------
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--------------------SS----------------------------------------------------------
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--------------------------------------S-----------------------------------------
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-------------S------------------------------------------------------------------
-------------------------------------------------------------S----------------S-
-S--------S---------------------------------------------------------------------
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----------------S---------------------------------------------------------------
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>forward_526
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-------------------------ACTGGTGAGAATGCCCACTTA----------------------------------
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>reverse_1719
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--------------------------------------CCTTTGAAGACATGGTGGCT----------------------
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