>input_sequence_72277
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-------------ATGGCGGGCG---AGAAGGGCCTGGTGCTGCTGGACTTCTGGGTGAGCCCGTTCGGGCAGCGCGTCC
GCATCGCGCTGGCGGAGAAGGGCCTGCCCTACGAGTACGCGGAGGAGGACCTGATGGCCGGCAAGAGCGACCGCCTCCTC
CGCGCCAACCCGGTGCACAAGAAGATCCCGGTGCTCCTCCACGACGGCCGCCCCGTCAACGAGTCCCTCATCATCCTCCA
GTACCTGGAGGACGCCTTCCCGGACGCC---CCGGCACTGCTCCCCTCCGACCCCTACGCGCGCGCGCAGGCCCGCTTCT
GGGCCGACTACGTCGACAAGAAGGTCTACGACTGCGGCTCCCGCCTCTGGAAGCTCAAGGGCGAGCCGCAGGCGCAGGCG
CGCGCCGAGATGCTGGACATCCTCAAGACCCTCGACGGCGCGCTCGGGGACAAGCCCTTCTTCGGCGGCGACAAGTTCGG
GTTCGTCGACGCCGCCTTCGCGCCCTTCACCGCGTGGTTCCACAGCTACGAGAGGTACGGCGAGTTCAGCCTGCCGGAGG
TGGCGCCCAAGATCGCGGCGTGGGCCAAGCGCTGCGGCGAGCGGGAGAGCGTCGCCAAGAGCCTCTACTCGCCGGACAAG
GTGTACGACTTCATCGGCCTGCTCAAGAAGAAGTACGGCATCGAGTAG--------------------------------
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-----------------------------
>chr5D_1_TraesCS5D01G432700
GGTGTGCGTGGGTAATGGAGAACGAGGAGGACGGGGGCGGAGAGCCAATGGCTGCATGGGGCATTTATAGCTGCTGCTTT
CTCCCGTCCATGCGCGCAGGGGCATCTCCATCCACAAAGCAGGCAGCTAGTCCATATCTTGGTATGCGGGCTGGTGCTTA
CGCGCAAAGAAAAAAGAATCAAAGGGAGTATGTCACAAAGCTTATATTGTTGGATTTGTATATGAAAGACTATTTTAGGG
TATATAACCTATCTTTTCTAAAGTTATTAAATCGAAGGTCAAAATTTGACCCAAACTACAAAGAGGACTAATAAACCAGG
TAGTGGTTGATTTGGTGCCAATAATCGGCATGTTATTTGTTGACAGGTCTAAAAAATTGGTTGGCTACCAACTATAGTTC
TCACCCATCTCTCAACAAAATTGCTAACTTTTGGCAACTTTCCATTCGCAATGCCGAATCTTGGCATCAAACCAAAAATA
ACTAGTTTCCCCGCAAAATTAAATGCAATCCCGCA--------ATACCAGGCTAGC---AGCTCCTTTTGATGTCGTCAC
CCCATATCACATCTTTTCCCCAATCCCAGGCTCAGCGATCTTCTCCGCCGATCTGCCCGCAGTCCGCGGTGTGGCCTCCC
AGCCAGCCAGCCCACTCGTCCCGCTCACACAGACGTGCCATGCCGGCCCATGCCCTCGTGCTGGGATTCCCTTCCCTTCC
CTTTGCACGCGCGCGCACCGTACGTGACGCAAGCGGTGACACACACCGGGCGA----GCGAAGGAAGGCCCAGAATCCTC
CAGCCGGTGCGTACACCACCCGTTCGATTCGATCTTCTCTCACA--------AGTTCCAGTCAAAACGTACTACTACTA-
--GACTGTTCCACACACGATCCCACCCT---CCCCTCTCC-CCTATAAATCCTCCTCTCAACCTCATGTT----------
--CATCCTCACTCATCACCCACACAGCGTGCACAACACA---AACACAAACACAGATCGATCGAGATCCAGAGCAAC---
-----CAGGAGCAATGGCGGGCG---AGAAGGGCCTGGTGCTGCTGGACTTCTGGGTGAGCCCGTTCGGGCAGCGCGTCC
GCATCGCGCTGGCGGAGAAGGGCCTGCCCTACGAGTACGCGGAGGAGGACCTGATGGCCGGCAAGAGCGACCGCCTCCTC
CGCGCCAACCCGGTGCACAAGAAGATCCCGGTGCTCCTCCACGACGGCCGCCCCGTCAACGAGTCCCTCATCATCCTCCA
GTACCTGGAGGACGCCTTCCCGGACGCC---CCGGCACTGCTCCCCTCCGACCCCTACGCGCGCGCGCAGGCCCGCTTCT
GGGCCGACTACGTCGACAAGAAGGTCTACGACTGCGGCTCCCGCCTCTGGAAGCTCAAGGGCGAGCCGCAGGCGCAGGCG
CGCGCCGAGATGCTGGACATCCTCAAGACCCTCGACGGCGCGCTCGGGGACAAGCCCTTCTTCGGCGGCGACAAGTTCGG
GTTCGTCGACGCCGCCTTCGCGCCCTTCACCGCGTGGTTCCACAGCTACGAGAGGTACGGCGAGTTCAGCCTGCCGGAGG
TGGCGCCCAAGATCGCGGCGTGGGCCAAGCGCTGCGGCGAGCGGGAGAGCGTCGCCAAGAGCCTCTACTCGCCGGACAAG
GTGTACGACTTCATCGGCCTGCTCAAGAAGAAGTACGGCATCGAGTAGCC-GCGCGGACGGACGGGC-----GGCCATGC
ATGCGCCATCCCGCCGGCCGGCC--------------AATAAATCAGGGAGCG-TTTGGGTGGCCTACAGTGCGTACGTT
TCGGATA------------TTGATTTCTTCGTGGAGTCTAGTGTT-CGTGCGTGTGTGGTTGGTGGTAGTTGTTTGGTTT
TGTTAGTGTGAGTGCGTCGTGG-----------GTGCCGTGTACTCCTGTGTGTGTGTCAA-------------------
-GTGTTGCCACCTGCGATTCCATTTTCATTCCGTGCGATGAATAAATTAAGAAGGGGTCTTCTGGACGCGTCTAGCGGGC
GCACGGCCGCCTAGGATGCTTAGCGAGCGGCCCGACACTTCAGATAATTTCTT-GTCTCTCCTTTTAACTAGAATAGTCA
TCTAGTAGTCCCTTTTTCTGCTATGTATTAAATGTCAACATATGTATCTCCTCC----------------TATGCATGTG
TTTGTTCGTATTTATTTTGTGATTTTAAAA-TTTAAAAAGGCATAACTTTCAATCCGTGTCTTAAAATTAAGATCCGTTT
TCACCGTTGAAACTCTTGCGACGTGCTCTTTAAAAGTAGATCCTACATGG-GATGTTTTGATGAACTAGTCTTCCTGCCA
GCTAAATATCAATATGTGTGCAACTAGACTACAT--GCCGCGCCAAATGAGTATGTGTGT----CAATTGTCCTTTTGCT
AACTAAACATCAATGTGTGTGCAACTAGACTACATTGCCGCGCCAACTGAGCATATG----TGTGTGCCAAT----AATC
CTGCCAACTAAACATCAATGTGTGTACAACTAGACTATATTGGCGCGTCAATTGCGCATATGTGTGTGCAATTAGTGTCC
TGCCAACTGAACATCAGTATGTGTGCAACTAGACTAAATTACAAGCCAACTAAGCATAAGTGTGTGCAACTAGTCCTTCT
GCCAATTAAACATCAATGTGTGT--AACTATACTACATTACAAGCC-AACTAAACATCAATGTGTGTGCAACTAGACTAT
ATTACAAGCCAACTGAGCACAAAGTAGCT
>chr5B_54
-----------------------------------------------------GCATGGGGCATTTATAGCTGCTGCTTT
CTCCCGTTCATGTGTGCAGGGGCATCTCCGTTCCCAAAGCATGCAGCTAGTCCATGTCTTGGTATGCAGGCTGGTGCTTA
TGCGCAAAGAAAAAAAAATCAGACGAAGTATGTCACAAAGCTTATATTGTTGGATTCGTATATGAAAAACTATTTTAGGG
TATATAACCTATTTTTTTTAAAG---TTAAATCAAAGGTCAAAATTTGACCCAATCTACAAAGAGAACTAATAAACCAGA
TAGTAATTGATTTGGGGCCAAAAATCGACATGTTAATTGTTGACAGGTCTAAAAAATCAGTTGGCTACCAACTATAGTTC
TCACCCATCTCTCAACAAT-TTGGTAATTTTGGGTAACTTTCGACTCGCAATGCCGAATCTTGGCATCAAACCAAAAATA
ACTACTTTCCCCGCAAAATTAATTGCAATCCTGCGAATCTGCGATACCAGGCTAGC---AGCTCCTTTTGATGTCGTCAC
CCCATATCACATCTTTTCCCCATTCCCTGGATCACCGATCTTCTCCGCCGACGTGCCCGCAGTCCCTGGTGTGGCCTCCC
AGCCAGCCAGCC-ACTCATCCCACTCACACAGACGTGCCATGCCGTCCCATGCCCTCGTGCCGGGAATCCCTCGCTTCC-
---------CGCGCGCACCGTACGTGACGCAAGCGGTGACACAC--CGGGCGA----GCGAACGAAGGCCCAGAATCCTC
CAGCCGGTACGTACACCACCCGTTCGATTCGATCTTCTCTCACA--------AGTTCCAGTCAAAACGTACTACTACTAC
TAGACTGTTCCACACACGATCCCACCCT---CCCCTCTCC-CCTATAAATCCTCTCACCC----CATCTT----------
--CATCCTCACTCATCACCCACACAGCGTACACAACACAG----CACAAACACAAACCAATCGAGATCCAAAGCAAC---
-----CAAGAGCAATGGCGGGCG---AGAAGGGGCTGGTGCTGCTGGACTTCTGGGTGAGCCCGTTCGGGCAGCGCGTCC
GCATCGCGCTGGCCGAGAAGGGCCTGCCCTACGAGTACGTGGAGGAGGACCTGATGGCCGGCAAGAGCGACCGCCTCCTC
CGCTCCAACCCGGTGCACAAGAAGATCCCGGTGCTCCTCCACGACGGCCGCCCCGTCAACGAGTCCCTCATCATCCTCCA
GTACCTCGAGGACGCCTTCCCGGACGCC---CCGGCCCTCCTCCCCTCCGACCCCTACGCGCGCGCGCAGGCCCGCTTCT
GGGCCGACTACGTCGACAAGAAGGTCTACGACTGCGGCTCCCGGCTCTGGAAGCTCAAGGGCGAGCCGCAGGCGCAGGCG
CGCGCCGAGATGCTGGAGATCCTCAAGACCCTCGACGGCGCGCTCGGGGACAAGCCCTTCTTCGGCGGCGACAAGTTCGG
GTTCGTGGACGCCGCCTTCGCGCCCTTCACCGCGTGGTTCCACAGCTACGAGAGGTACGGCGAGTTCAGCCTGGCGGAGG
TGGCGCCCAAGATCGCCGCGTGGGCCAAGCGCTGCGGCGAGCGGGAGAGCGTCGCCAAGAGCCTCTACTCGCCGGACAAG
GTGTACGACTTCATCGGCCTGCTCAAGAAGAAGTACGGCATCGAGTAGGGCGCGCGGGCGGGCGGGC-----GGCCATGC
AGGCGACAGCCGGCCGGCCGTCCGGAGGAAAGGAACAAATAAATCATGGAGCGATTTGGGTGGCCTACAATGCGTACGTC
TGGATATTTG---------TTTCTTTCTTCGTGGAATAAAGTGTTCCGTGTGTGTGTGGTTGGTGGTAGTTGGTTGGGTC
AGTCAGTGTGGGTGCGTGTTGC-----------GTACTCGTGA----TGTGTGTGTGTCAATGTGTCAACCCTGGTCTTC
AGTGGTGGCAGCTGTGATTTCATTTCCATTCCGTGCGATGAATAAATTAAGAGGGGGTCTTC------------------
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>chr5A_431
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------------------------------TTGGCAACTTTAGATTGGCAGTGCCGAATCTTGGCATTAAATCAAAAGTA
ACTAATTTCCCCTCAAAATTAAATGCAATCCCGCA--------ATACCAGGCTAGTACTAGCTCCTTTCGATGACGTCAC
CCCATATCACATCTTTCCCCCAAT-CCAGGATCCCCGATCTTCTCCGCCGACGTGCCCGCAGCCCGCAGTGTGGCCTCCC
AGCCAGCCAGCC-ACTCGTCCCGCTCACACAGACGTGCCATGCCGGCCCATGCCCTCGTGCGCCGGT-------------
--------------------TACGTGACGCAAGCGGTGACACAC--CG------------AACGAAGGCCCAGAATCCTC
CAGCCGGTACGTACACCACCCGTTCGATTCGATCTCCTCTCACACACGTTCTAGCTCTAGTCAAAACGTGCCAGACTATT
CCGGAT-----ACACACGATCCCACCCT---CCCCTCCCC-CCTATAAATCCTCCGCTC-ACCTCATCTT----------
--CATCCTCACTCATCACCCACACAGCCTACACAACACA---AACACAAGCACAGATCGGTCGAGATTCAAGGCAAC---
-----CGGGAGCAATGGCGGGCG---AGAAGGGGCTGGTGCTGCTGGACTTCTGGGTGAGCCCGTTCGGGCAGCGCGTGC
GCATCGCGCTGGCCGAGAAGGGCCTGCCCTACGAGTACGCGGAGGAGGACCTGATGGCCGGCAAGAGCGACCGCCTCCTC
CGCGCCAACCCGGTGCATAAGAAGATCCCGGTGCTCCTCCACGACGGCCGTGCCGTCAACGAGTCCCTCATCATCCTCCA
GTACCTGGAGGAGGCCTTCCCGGACGCG---CCCGCTCTGCTCCCCTCCGACCCCTACGCGCGCGCGCAGGCCCGCTTCT
GGGCCGACTACGTCGACAAGAAGGTCTACGACTGCGGCTCCCGCCTCTGGAAGCTCAAGGGCGAGCCGCAGGCGCAGGCG
CGCGCCGAGATGCTGGACATCCTCAAGACCCTCGACGGCGCGCTCGGGGACAAGCCCTTCTTCGGCGGTGAGAAATTCGG
GTTCGTCGACGCCGCCTTCGCGCCCTTCACCGCCTGGTTCCACAGCTACGAGAGGTACGGCGAGTTCAGCCTGCCGGAGG
TGGCGCCCAAGATCGCCGCGTGGGCCAAGCGCTGCGGCGAGCGGGAGAGCGTCGCCAAGAGCCTCTACTCGCCGGACAAG
GTCTACGACTTCATCGGCCTGCTCAAGAAGAAGTACGGCATCGAGTAGGC-GCGCCGACGGACGGACGGACGGGCCATGC
AGGCGACAGCCGGCCCGCCGTCCGGAGGGAAGCAACAAATAAATCAGGGAGCGATTTGGGTGGCCTACAATGCGTACGTC
TGGATAGAGTATTTCTTTCTTTCTTTCTTCGTGGAATAAAGTGCTCCGTGTGTGTGTGGTTGGTGGTTGTTGGTTGGATC
AGTCAGTGTGTGTGGGTGCGTGTTGTGTACTCAGTACTCGTGA----TGTGTGTGT------------------------
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>chr5B_708
CCCTTG--------------------------------------------------------------------------
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----GCGCACGCGCGGATCGTGCGTGACGCAAGCGGTGACACAC--CGGGCGAACGGGCGAACGAAGCCCCAGAATTCCC
CGGCCGGTACGTAGACGCACACGCACCAGCAGATTTTTTTGGTCTT--------CTCATCTCGAGACGTACTAGACCATT
CCGGAA-------ACACGATCCCACCCTCTGCTGCTCTCCGCCTATAAATCCTCACCCTCG------------TCCTCCC
ACCATACTCACTCCCCACCCGC-------ACACAGCGCACCCAACACAAACACACACACACAAGTCGATTGACCCAACAC
AAACTCAACAGCAATGGCGGGCG---AGAAGGGTCTGGTGCTGCTGAACTTCTGGGTGAGCCCGTTCGGGCAGCGCTGCC
TCATCGCTCTTGCAGAAAAAGGCCTCCCCTACGAGTACGTCGAAGAGAACCTCATGGCCGGCAAGAGCGACCGCCTCCTC
CGCTCCAACCCCATCCACAAGAAGATCCCAGTGCTCCTCCACGACGGCCGCCCCGTCAACGAGTCTCTCATCATCCTCAA
CTACCTCGACGACGCCTTCCCGGACACC---CCGTCCCTCCTCCCCTCCGACCCCTACGAGCGCTCGCAGGCTCGCTTCT
GGGCCGACTACGTCGACAAGAAGGTCTACGACTGCGGCACCCGGCTCTGGAAGCTCAAGGGCGAGCCGCACGCGCAGGCG
CGGGCCGAGATGGTGGAAATCCTCAAGAATCTGGACGGGGCGCTCGGGGATAAGTCCTTCTTCGGCGGCGATGCCTTCGG
GTTCGTCGACGCCGCGTTCGCGCCCTTCACGTCGTGGTTCCACAGCTACGAGAAGTACGGCGAGTTCAGCGTGGCGGAGG
TGGCGCCGAAGATCGCGGCGTGGGCAAAGCGGTGCGGCGAGCGGGAGAGCGTCGCCAAGAGCCTCTACTCGCCTGACAAG
ATTTACGAGTTCATCGGCGTGCTCAAGAAGATGCACGGCGTCGAGTAAGCCGACCGGCCGGCCGGG--------------
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>chr5D_865
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----------CACACATGATCCCACCCT---CTGCTCTCCGCCTATAAATCCTCACCCTC----CTGGCCTCCTCCTCCC
ACCATACTCACTCCTCACCCGC-------ACACAGCGCACGCA--ACACAAACACACGCACAAGTCGATTGATCC--CAC
CAACTCAACAGCAATGGCGGGCG---AGAAGGGCCTGGTGCTGCTGGACTTCTGGGTGAGCCCGTTCGGGCAGCGCTGCC
GCATCGCCCTGGCAGAAAAAGGCCTCCCCTACGAGTACGTCGAAGAGAACCTCATGGCCGGCAAGAGCGACCGCCTCCTC
CGCTCCAACCCCATCCACAAGAAGATTCCTGTCCTCCTCCACGACGGCCGCCCCGTCAACGAGTCCCTCATCATCCTCAA
CTACCTCGACGACGCCTTCCCGGACACC---CCCTCCCTCCTCCCCTCCGACCCCTACCAGCGCGCGCAGGCTCGCTTCT
GGGCCGACTACGTCGACAAGAAGGTCTACGACTGCGGCACCCGGCTCTGGAAGCTCAAGGGCGAGCCGCACGCGCAGGCG
CGGGCCGACATGGTGGAAATCCTCAAGAATCTGGACGGGGCGCTCGGGGACAAGGCCTTCTTCGGCGGCCATGCCTTCGG
GTTCGTGGACGCCGCGTTCGCGCCCTTCACCTCGTGGTTCCACAGCTACGAGAAGTACGGCGAGTTCAGCGTCGCGGAGG
TGGCGCCGAAGATCGCGGCTTGGGCAAAGCGGTGCGGCGAGCGGGAGAGCGTCGCCAAGAGCCTCTACTCGCCTGACAAG
ATTTACGAGTTCATCGGTGTGCTCAAGAAGATGCACGGCGTTGAGTAGGCCGGCCGGCCGGCCGGCC-----GG------
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>chr5A_867
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------------CACGCGATCCCACCCT---CTGCTCTCCGCCTATAAATCCTCACCCTC---------------CTCCC
ACCATACTCACTCCTCACCCGC-------ACACAACACA---AACACAAACACACACAGACAAGTCGATTGATCC--AAC
CAACTCAACAGCAATGGCGGGCG---AGAAGGGTCTGGTGCTGCTGAACTTCTGGGTGAGCCCGTTCGGGCAGCGCTGCC
TCATCGC--------------------CCTACGAGTACGTCGAAGAGAACCTCATGGCCGGCAAGAGCGACCGCCTCCTC
CGCTCCAACCCGGTCCACAAGAAGGTCCCGGTGCTCCTCCACGACGGCCGCCCCGTGTACGAGTCCCTCATCATCCTCAA
CTACCTCGACGACGCCTTCCCGGACACC---CCCTCCCTCCTCCCCTCCGACCCCTACGAGCGCTCGCAGGCTCGCTTCT
GGGCCGACTACGTCGACAAGAAGGTCTACGACTGCGGCACCCGGCTCTGGAAGCTCAAGGGCGAGCCGCACGCGCAGGCG
CGGGCCGAGATGCTGGAAATCCTCAAGAATCTGGACGGGGCGCTCGGGGACAAGCTCTTCTTCGGCGGCGACGTCTTCGG
GTTCGTGGACGCCGCGTTCGCGCCCTTCACCTCGTGGTTCCACAGCTACGAGAAGTACGGCGAGTTCAGCGTCGCCGAGG
TGGCGCCGAGGGTCGCGGCGTGGGCAAAGCGGTGCGGCGAGCGGGAGAGCGTCGCCAAGAGCCTCTACTCGCCGGACAAG
ATTTACGAGTTCATCGGCGTGCTCAAGAAGATGCACGGCGTCGAGTA---------------------------------
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>chr3D_1000
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------------AATGGCCGGTGAGAAGAAGGGGCTGGTGCTGCTGGACTTCTGGGTGAGCCCGTTCGCGCAGCGCTGCC
GCATTGCGCTGGCCGAGAAGGGCCTGGCCTGCGAGTCCCTGGAGCAGGAGCTGCTGGGCGACAAGAGCGACCTCCTCCTC
GGCTCCAACCCGGTCCACAAGAAGGTCCCCGTGCTCCTCCACGACGGCCGCGCCGTCTGCGAGTCCCTCGTCATCCTCGA
GTACATCGAGGACGCCTTCCCGGGCGCGGCCCCGCGGCTCCTCCCCGCCGACCCGCACGCGCGCGCGCAGGCGCGGTTCT
GGGCCGACTACGTCGACAAGCGGGTGTACAGCTGCGGGACGCGGCTGTGGAAGCTCAAGGGGGAGGGGCGCGCGGCGGCG
CGGGCCGAGATGCTGGAGACGCTCCGGACGCTGGACGCCGAGCTCGGGGACAGGGCGTTCTTCGGCGGTGAGGCGTTCGG
GTTCGTGGACGTCGCGCTCATACCGCTCACGTCGTGGTTCTACAGCTACGAGAAGCACGGCGGGTTCAGCGTCGAGGAAG
AGTGCCCGGGGCTGGCGGAGTGGGCGCGGCGGTGTGGGGAGAGAGAGAGCGTGGCCAAGGTCCTGACGCCACCGGAGGAG
GTGCACGACTTCATCTGCCTGCTCAAGAAGCACTACGGCGTCGAGTAGC-------------------------------
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>chr3A_1012
GAC-----------------------------------------------------------------------------
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------------------------------GGGGCTGGTGCTGCTGGACTTCTGGGTGAGCCCGTTCGCGCAGCGCTGCC
GCATTGCGCTGGCCGAGAAGGGCCTGGCCTGCGAGTCCCTCGAGCAGGAGCTGCTGGGCGCCAAGAGCGACCTCCTCCTC
GGCTCCAACCCCGTCCACAAGAAGGTCCCCGTGCTCCTCCACGACAGCCGCGCCGTCTGCGAGTCTCTCGTCATCCTCGA
GTACATCGAGGACGCCTTCCCCGGCGCGGCCCCGCGGCTCCTCCCCGCCGACCCGCACGCGCGCGCGCAGGCGCGCTTCT
GGGCCGACTACGTCGACAAGCGGGTGTACAGCTGCGGGACGCGGCTGTGGAAGCTCAAGGGGGAGGGGCGCGCGGCAGCG
CGGGCCGAGATGCTGGAGACGCTCCGGACGCTGGACGCCGAGCTCGGGGACAGGGCGTTCTTCGGCGGCGAGGCGCTCGG
GTTCGTGGACGTCGCGCTCATACCGCTCACGTCGTGGTTCTACAGCTACGAGAAGCACGGCGGGTTCAGCGTCGAGAAAG
AGTGCCCGGGGCTGGCGGAGTGGGCGCGGCGGTGCGGGGAGAGGGAGAGCGTGGCCAAGGTCCTGACGCCGCCGGAGGAG
GTGCACGACTTCATCGGCCTGCTCAAGAAGCACTACGGCCTCGAGTAG--------------------------------
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>chr6A_1936
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-----------------------------------------------------------TTTTGGACGCATCTAGCGGGC
GCACC-------AGGATGCTTAAGGAGTGGCCCGCCATTTTAAGTATTTT-TT-GTTTCCTCTTTTAATTAAAATAGTCA
TCTAGTAGTCTTTTTTCCTGCTACATATTAAATGATAGCATATGCATCTTCTCC----------------TGTGCATGTC
TTTGTTTGCATTTATTTTATGATTTTAAATTTTTAAAAAGCCATAACTTTCAATCCGTGTGTCGAAATTCACATCCGTTT
TCATCGTTGAAGCCCTCGTGACGTGCTCTTCAAAAGTAGATCCCACATGGAGATGTTTCGACGAACTAATCTTCCTGCCA
ACTAAACATCAATATGTGTGTAACTAGACTACAT--GCCGGGCCAACTGAGCATATGTGTATGCCAATAGTCCTTCTGCC
AACTAAACATCAATGTGTGTGCAACTAGACTATATTGCCGCGCTAACTGAGCATATG----TGTGT--TAAT----AATC
CTGCCAACTAAACATCAATGTGTGTGCAATTAGACTACATTGCCACGTCAATTGCGCATATGTCTGTGCAACTAGTGTCC
TACCAACTAAACATCAGTATGTGTGCAACTAGACTAAATTACAAGCCAACTGAGGATATGTGTGTGTAACTAGTCCTTCT
GCCAACTAAACATCAATGTGTGTGCAAGTAGACTACATTA-AAAGC-AACTAAACATCAATGTGTGTGCAACTAGACTGA
ATTACAAGCCAACTGAG------------
>chr7B_1936
TTCTTG--------------------------------------------------------------------------
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----------------------------------------------------------------GACGCATCTAGCGGGC
GCACGGCCGCCCAAGATGCTTAGCGAGTGGCCCGCCATTTTAAGTATTTT-TT-GTCTCCTCTTTTAATTAAAATAGTCA
TTTAATAGTTCTTTTTCCTGCTACGTATTAAATGACAACATATGCATCTTCTCCTGTGCATGTATATGCATGTGCATGTC
TTTGTTTGCATTTATTTTATAATTTTAAAATTTTAAAAAGCCATAACTTTCAATTGGTGTGTCAAAATTCACATCCGTTT
TCATCGTTGAAGCCCTCGTGATGTGCTCTTCAAAAGTAGATCCCACATGGAAATATTTTGACGAACTAATCTTCCTGCCA
ACTAAACATCAATATGTGTGTAACTAGACTACAT--GCCGCGCCAACTGAGCATATGTGTATGCCAATAGTCCTTCTGCC
AACTAAACATCAATGTGTCTGCAACTAGACTACATTGCCGCGCCAACTGAGCATATG----TGTGT--CAAT----AATC
CTGCCAACTAAACATCAATGTGTGTGCAATTAGACTACATTGCCACGTCAATTACGCATATGTCTGTGCAACTAGTGTCC
TGCCAACTAAATATCAGTATGTGTGCAATTAGACTAAATTACAAGCCAACTGAGTATATGTGTGTGTAACCAGTCCTTCT
GCCAACTAAATATCAATGTGTGTGCAAGTAGACTACATTA-AAGGC-AACTAAACATCAATGTGTGTGTAACTAGACTGA
ATTACAAGCCAACTGAG------------
>chr2A_1939
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--------------------------------------------------------------TGGACGCATCTAGCGGGC
GCACGGCCGCCCGGGATGCTTAGCGAGTGGCCCGCCATTTTAGGTATTTT-TTTGTCTTCTCTTTTAATTAGAATAGTCA
TCTAGTAGTCTTTTTTCCTGCTACGTATGAAATGCCAGTATATGCATCTTCTTCTGTGCATGCATATGCATGTGCATGTG
TTTGTTTGCATTTATTTTATGATTTTAAAATTTTAAAAAGCCATAACTTTCAATCCGTGTGTCAAAATTCACATCCATTT
TCATCGTTAAAGCCCTCGCGACGTGCTCTTCAAAAGTAGATCCCACATGGAGATGTTTCGACGAACTAATCTTCCTGCCA
ACTAAACATCAATATGTGTGTAACTAGACTACAT--GTCGCGCAAACTGAGCATATGTGTATGCCAATAGTCCTTCTGTC
AACTAAACATCAATGTGTGTGCAACTAGACGACATTGCCGCGCCAACTGAGCATATA----TGTGT--CAAT----AATC
CTGCCAATTAAACATCAATGTGTGTGCAATTAGACTACATTGCCACGTTAATTGCGCATATGTCTGCACAACTAGTGTCC
TGCCAACTAAACATCAGTATGTGTGCAACTAGACTAAATTATAAGCCAACTAAGCATATGTGTATGTAACTAGTCATTTT
GCCAACTAAATATCAATGTGTGTGCACCTAGACTACATTA-AAAGCCCACTAAACATCAATGTGTGTGCAACTAGACTAA
ATTACAAGCCAACTGAG------------
>chr5D_1940
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---------------------------------------------------------------GGACGCGTCTAGCCAGC
GCACAGCCGCCTGGGATGCTTAGCGAGCGGCCCGCCACTTTAGGTAATTT-CTTGTCTCCCCTTTTAATTAGAATAGTCA
TCTAGTAGTCCCTTTTCCTGCTACGTATTAAATGCCAGCATATGCATCTCCTCCTGTACATGCATATGGATGTGCATGTG
TTTGTTCGCATTTATTTTGTGATTTTAAAATTTTCAAAAGGCATAACTTTCAATCCGCGTGTCGAAATTCAGATCCGTTT
-CACCGTTGAAACCCTCGCGACGTGCTCTTCAAAAGTAGATCCTACATGTGGATGTTTCGACGAACTAGTCTTCCTGTCA
ACTAAACATCAATATGTGTGCAACTAGACTACAT--GCCGTGCCAACTGAGCATACCTGTGTGCCAATAGTCCTTCTGCC
AACTAAACATCAATATGTGTGCAACTAGCCTACATTGCCGCGGCAACTGAGCATATGTG--TTTGC--CAAT----AGTC
CTGCCAACTAAATATCAATGTGTGTGCAACTAGACTACATTGCCGCGTCAATTGCGCATATGTGTGTGCAACTAGTGTCC
TGCCAACTAAACATCAATATGTGTGCAACTAGACTAAATTACAAGCCAACTGAGCATATGTGTGTGCAACTAGTCCTTTT
GGCAACTAAACATCAATGTGTGTGCAATTAGACTACATTA-TAAGCCAACTAAACATCAATGTGTGTGCAACTAGACTAA
ATTACAAGCCAACCGAGCA----------
>chr1A_1940
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---------------------------------------------------------------GGACGCATCTAGCGGGC
GCATGTCCGCCTGGGATGCTTAGCAAGCGGCCCGTCATTTTAGGTAATTT-TTTGTCTCCCCTTTTAATTAGAATAGTCA
TCTAGTAGTTCCTTTTT-TGTTACATATTAAATGCCAACATATGTATGTTCTTCTGTGCATGCATATGCATGTGTATGTG
TTTGTTTGCATTTATTTTATGATTTTAAAATTTTAAAAAGGCATAACTTTCAATCCGTGTGTCGAAATTCAGATACGTTT
TCACCGTTGAAGCCCTCGCGACGTGCTCTTCAAAAGTAGATCCCACGTGGGGATGTTTTGACGAACTAATCTTCCTGCAA
ACTAAACATCAATATATGTACAACTAGACTACAT--GCCGCGCCAACTGAGTATATGTGTATGCCAATAGTCCTTCTGCC
AACTAAACATCAATGTGTGTGCAACTAGACTACATTGCCGCGTCAACTGAGCATACGTG--TGTGT--CAAT----AATC
CTGCCAACTAAATATCAATGTGTGTGCAACTAGACTACATTGCCACGTCAATTGCGCATATGTTTGTGCAACTAGTGTCC
TGCCAACTAAACATCAGTATGTGTGCAACTAGACTAAATTACAAGCCAACTGAGCATATGTGTGTGCAACTAGTCCTTCT
GTCAACTAAACATCAATGTGTGTGCAACTAGACTACATTA-AAAGCCAACTAAATATCGATGTGTGTGCAACTAGACTAA
ATTACAAGCCAACTGAGCA----------
>chr7D_1940
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---------------------------------------------------------------GGACGCATTTAGCCGGC
GCACGGCCGCCTAGGATGGTTAGCGAGCCGCCCGCCACTTTAGGTAATTT-CTTGTCTCCCCTTTTAATTAGAATAGTCA
TCCAGTAGTCTCATTTCCTGCTAC-TATTAAATGCCAGCATATGCATCTCCTTCTGTGCATGCAT------GTGCATGTG
TTTGTTCTCATTTAATTTGTGATTTTAAAATTTTAAAGAGGTATAACTTTCAATCCGCGTGTCAAAATTCGGATCCGTTT
TTACCGTTGAAACCCTCACGGCGTGCTCTTGAAAAGTAGATCCCACATGAGGATGTTTCGACGAAGTAGTCTTTCTGCCA
ACTAAATATTAATGTGTGTGCAACTAGACTACATTTCCCGCGCCAACTGAGCATATGTGTGTGCCAATAGTC---CTGCC
AACTAAACATCAATGTGTGTGTAACTAGGCTACATTGCCGCGACAACTGAGCATA--TG--TGTATGCCAAT----AGTC
CTGCCAACTAAACATCAATGTGTGTGCAACTAGACTACATTGCCGCGTTAATTGCGCATATGTGTGTGCAACTAGTGTTC
TGCCAACTAAACATCAATATGTGTGCAACTAGACTAAATTACAAGACAACTGAGCATATGTGTGTGCAACTAGTCCTTCT
GGCAACTGAACATCAATGTGTATACAACTAGACTACATTA-TAAGCCAACTAAACATTAATGTGTGTACAACTAGACTAA
ATTACAAGCCAACTGA-------------
>chr4A_1947
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----------------------------------------------------------------------TCTAGCGGGC
GCACGGCCGCCCGGAATGCTTAGCGAGTGGCCCGCCATTTTAAGTATTTT-TTTGTCTCCTCTTTTAATTAGAATAGTCA
TCTAGTAGTTTTTTTTCCTACTACGTATTAAATGCCAGCATATGCATCTCCTCCTGTGCATGCATATGCATGTGCATGTG
TTTGTTTGCATTTATTTTATGATTTTAAAATTTTAAAAAGCCATAACTTTCAATCCGTGTGTCGAAAATCATATCCGTTT
TCATCGTTGAAGCTCTCGCGACGTGCTCTTCAAAAGTAGATCCCACATGGAGATGTTTCGATGAACTAATCTTCCTGCCA
ACTAAACATCAATATGTGTGTAACTAGACTACAT--GCCACGCCAACTGACCATATGTGTATGCCAATAGTCATTCTGCT
AACTAAACATCAATGCGTGTGCAACTAGACTACATTGCTGTGCCAACTGAGCATA--TG--TGTGT--CAAT----AATC
CTGCCAACTAAACATCAATATGTATGCAACTAGACTACATTGTCACGTCAATTGCGCATATGTCTGTGCAACTAGTGTCC
TGCCAACTAAACATCAGTATGTGTGCAACTAGACTAAATTACAAGCCAACTGAGCATATGTATGTGTAACTAGTCCTTCT
GCCAACTAAATATCAATGTGTGTGCAACTAGACTATATTA-AAAGCCAACTAAACATCAATGTGTGTGCAACTAGACTAA
ATTACAAGCCAACCGAG------------
>chr7D_2100
TTTGC---------------------------------------------------------------------------
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------TGTATTTAATTCGTGGTTTCAAAAACTAAAAAAAGCATAACTTTTAATCCGCGTGTCGGAATTAAGATCCGTTT
TCACCGCTGGAATCCTCGCGACGCGCTCTTTGAAACTAGATCCCGCATGGGGATGTTTCGACGAATTAGTCTTCCTGCCA
ACTAAATATCAATGTGTGTGCAACTAGACTAGA-TTGCCGCGCCAACTGAGCATATGTGTGTGCAACTAGTG-TTCTGCC
AACTAAACATCAATGTGTGTGCAACTAGACTAGATTGCCGCACCAACTGAGCATA--TG--TGTGTGTGCCAAAAAAGTC
CTGCCAACTAAACATCAATGTGTGTGCAACTAGACTAGATTGCCGCGCCAACTGAGCATATGTGTGTGCAACTAGTGTCC
TGCCAACTAAACATCAATGTGTGTGCAAGTAGACTATATTACAAGCCAACTGAGAATATGTGTGTGCAACTAGTCTTCCT
ACCAACTAAACATCAATGTGTGTGCAACTAGACTACATTA-CAAGCCAAGTAAACATCAATATGTGTGCAACTAGACTAT
ATTACAAGCCAACT---------------
>chr2D_2106
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------CGCATTTATTTTAGGTTTTCAATTTTTTAAAAAGTCATAACTTTTAGATCGCGCTTCGGAATTAAGATCCGTTT
TCACCGTTGGAACCCTCGCGACGTGCTTTTCAAAAGTAGATCCCATATGGGGATGTTTCGACGAACTAGTCTTCCTGCCA
ACTAAATATCAATATATGTGCAACTAGACTACAT--GCCGCGCCAACTAAGCATATGCGTGTGTCAATAATCCTTCTGCC
AACTAAACATCAATGTGTGTGCAACTAGACTACATTGCCGCGCCAACTGAGTATA--TGTATGTGC--CAAT----AGTC
CTGCCAACTAAACATCAATGCGTGTGCAACTAGACTACATTGACGCGCCAACTGAGCATATGTGTGTGCAACTAGTGTCC
TGCCAACTAAACATCAATATGTGTGCAACTAGACTACATTACAAGCCAACTGAGCATATGTGTGTGCCAATAGTCCT---
GCCAACTAAACATTAATATGTGTGCAACTAGACTACATTA-CAAGCCAATTGAGCAT--ATGTGTGTGCAACTAGACTAC
ATTACAAGCCAAC----------------
>SNPs
-S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
-------S----S-S--------------S-S-S-------S-------------S-----------S------------
S--------------S-----S-S-S------------------------------S----------S------------
------------S----S-----SSS-------S--------------------S----------S-------------S
----SS---------S-----S-----S-------S---------------------SS---------------------
------------------SS---S---S--------------S-------------------------------------
----S---------------------------------------------------------------------------
------------------------------S---S----------------SS---------------------------
------------S------------------------------------------------S----------SS-S-S-S
SSSS--S-S-----------------------------------SS----------------S-----------------
--------S-----------------------------------------------------------------------
-------------------------------------------------------S---S--------------------
-----------------------------S--------------------------------------------------
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-------------S------------------------------------------------------------------
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------------------------------------S-------------------------------------------
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-S---S--S--S--------S------------------------------------------------S---------S
-S-SSSS--------------SS------------S-SS-----------S---------------------S----S-S
S--S------S------SS----------------S-SSSSS-SSSS---------------------------------
----S--S--S---S----S-----S--------------------------S---------------------------
----------------------------------S-----S--S------S--------S--------S-----------
-----------------------S----------S------------------------------------S--------
------------------------------------------------------------S-S-----------------
----------------S---------------------------------------------------------------
S---------------------------------------------S-------S-------------S------S----
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-------------------------S-----------S----S----------------------------S--------
--------S-------------------------------------------------S---------------------
-----S------------------------S---------S---S-----------------------------------
-------------------SSSSSSSSSS
>forward_21
-GTGTGCGTGGGTAATGGAGA-----------------------------------------------------------
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>reverse_1891
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--------------------------------------------------CGTGTGTGGTTGGTGGTAGT----------
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-----------------------------
