>input_sequence_72259
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--------------------------------------------------------------------------ATGAAC
ATCTTTGTCAATAACCCCAC--------CGGAACAACGTTCCGGGTCTGGGTTCACCCATCAGACACCGTGTGTTCCGTC
ATGGAGAACATCCACAACCGGTATCGCCTCATCTTCAATGGGGTGCAGCTACAGGATAACTGTAGATTGGC-CGATTACA
ACATCCAGGAGGACTCCACTCTTGACCTTGAAGAGAAGATGCAGATCCACGTGATGGAGACGCTGAT---------CACC
ATCGACCTTGACTTCAACAGCCTAGACACTATCGACGGCGTGAAGGCCAAGATCTATCGCCTCAAGGGCTTTCCTGTAGA
TCAGCAGTGCCTCCTCTTCGCCGGCAAGCGTCTAGAGAACGGGAACCGCACCTTGGCAGACCACAACATATGCATGGAGT
CCACGATACTCCTTGTCCTCCTCCCATGTATTCCGAGAGGACACATGATGCAGATCTTCGTGAAGGGGCTAACTGGGAAG
ACCATCACTCTCCAGGTTGGGAGCTCGGACACCGTCGATAGTGTCAAGGTGAAGATCTATGAGAGGAACCACGCCC----
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-----------------CTTTCCCGAATGTGCAACGCCTCATCTTTGCTGGCAGG-CAGCTGGAGGGAGGGCGCACCTTG
GCGGACTCCAAGATTACAAAGCATTGCACCCTTCATTTGAGTC-------------------------------------
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----------------------------------------------------------------------TACACCTTCG
TGGTGGTTGA----------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G511200
CTGTTGGCCAGGACCAATAGCGCTGCAGCGTTGCTCCTTCGGTCCAAAAGAAAACCGAATTCACCAAAAAAAAAACAGGT
TAAAAAGCCAGCAACTCCTCTTACGAAAAA-GCACTATTTTATATAATTTTGGATGTTTATGAAATTTCAAAAATCATAA
TTT--AATTTTTTATACAAAATTACAATAAATCATGAGATT----TGAAAAAATGCATAATTCTATAAA----ATATTTA
T-A-TTTTTTTAAAATATTCATGTATTTTGT-AAAAATGTTTAAAAACTAGGAAAACAAAAGAAACAGAAAGAA-AG-AA
GCAGAAAGGCAAAACCGCCGACGAAAGAAGCAGCATGAATCCAGAAAAAGAAATGCACAAAAAGCAAAGGAAAACCGGGG
TCAGGAAACCAATGAAAAAATTCGGCCAAAATGAGTGGGATCCGTGCAAG-AA-AA-AAATGATATTCCAATTTTGTGAC
AGAAATTAATTAAGGGTGTGTATATGTGCGATGGTATTGTAAAACCTAATTGATTGGACCGGACCCTATAAAAAGAACGC
CATCTATATATTCTATCCCCAATCCTAACTCTCGTACTACTCCGGATCT--ATCTCCCTCCCTGCCTGCTCTCTCTCCGG
CGGGAGCAACAAGCATCGACGTATGGTCGATCCACTTCAAGGTACA----GAGCTGTTCATTATTGTTTTGGGCGTATCC
ATTC--TATATCCTATATACTACTAGCTAGAGGATCTCATGTCGGTGTTTTCTAGGATTACATTGAATGGTTGCCTGATG
GAATTTGTTGTTCAT----CTGATAATCTCAGA-----------------------------------------------
----TAGAACTTAGAACAATGTTATAAACTGTTAATCATTAACTTTTCTTGGGAAGAAATTATCGTTATATACATA-TAT
ATGTACTGCTCAACAT-TG------------------------TCCACGTACCTGCTGGAATTGTTGACGTTTTT--GTG
CATTTCTCTATGGCC-TAAATATATAA---GTGTCTAACGACTACCGGTGTTCGGTTTTTGCTCATCCAGAACAATGAAC
ATCTTTGTCAATAACCCCAC--------CGGAACAACGTTCCGGGTCTGGGTTCACCCATCAGACACCGTGTGTTCCGTC
ATGGAGAACATCCACAACCGGTATCGCCTCATCTTCAATGGGGTGCAGCTACAGGATAACTGTAGATTGGC-CGATTACA
ACATCCAGGAGGACTCCACTCTTGACCTTGAAGAGAAGATGCAGATCCACGTGATGGAGACGCTGAT---------CACC
ATCGACCTTGACTTCAACAGCCTAGACACTATCGACGGCGTGAAGGCCAAGATCTATCGCCTCAAGGGCTTTCCTGTAGA
TCAGCAGTGCCTCCTCTTCGCCGGCAAGCGTCTAGAGAACGGGAACCGCACCTTGGCAGACCACAACATATGCATGGAGT
CCACGATACTCCTTGTCCTCCTCCCATGTATTCCGAGAGGACACATGATGCAGATCTTCGTGAAGGGGCTAACTGGGAAG
ACCATCACTCTCCAGGTTGGGAGCTCGGACACCGTCGATAGTGTCAAGGTGAAGATCTATGAGAGGAACCACGCCC----
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-----------------CTTTCCCGAATGTGCAACGCCTCATCTTTGCTGGCAGG-CAGCTGGAGGGAGGGCGCACCTTG
GCGGACTCCAAGATTACAAAGCATTGCACCCTTCATTTGAGTC-------------------------------------
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----------------------------------------------------------------------TACACCTTCG
TGGTGGTTGAGATGCATGGATGGCCGTCCAACCACTAGTTTTATTTTTGCTGGAGTCTTCCATCCAGCTGACATTAGCGG
TGTGTTGTGACTTATGAGTAAAAAACTATAATTCTATTACTATTAGTATATGTTGCTCCAATCTT-GTTGTTTTCAAGTA
CGGATGTGTTATCTGTTAC-------------------------------------------------------------
----------------------------------------------------------------AATAGT----------
----------------------------------GCGGAGACCCTATATTGGTAGTATACAACGTTGAGGATATCACTTA
TCATTATATCTCAATCGGCTGGGGATTAAATGATTAATCGGAAATCAGACGATTAATCGATTTTATCAGTTGACTATTAT
TTGGCCTTTTTTTTACAAATCTCAGGTTTTCAACACTAAAATATGCTATTTTCAACAAAAAATAATATTGGACAGAAGTA
TTACCTTGATTCCTTTCCTTTGAATCCTTGTACAATGACAGAAAAAAGGACAACTGTACATACTGTATTACATAACAAGA
TCTGCAAACA-AAACACACATAGTGTTAGGAATAGACCCGATTTATCAGTATGTTCCCGATAAATCGTTTGGCAGCGGAC
CTCCTATACGATGCATTTTGCGTCATATAGGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNN------------------------------------------------------------------------GGCC
CACACG--------------------------------------------------------------------------
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----------------------------------------------------GTGTGAGGTGAAAAATGACGAACGTGAA
AAACAGGAG---------------------------------TTTGTGCGAGTGCTGCTAGCCAAAGGGCCTTTCGAGAT
ATACTGTCAGAAGTACAACACGATACT-CAAGACCTAAAGGCAGCCGC--------------------------------
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-------------------------------------------------------------------AAAACATAACACT
TGAAAACAATCACGAACAGATTTCCAAAAAAATGGAGCAAAAGTTTGTACTTCCGAACAATCCTTGACAAACGCGACCAA
ATTTTCAAAATTATGAATACATTTTAATTTTGAACAAAAAATTGAA----------------------------------
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----------------------------ATCACAAACATTTTTTGAATTTAGAG--------------------------
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>chr3D_1
CTGTTGGCCAGGACCAATAGCGCTGCAGCGTTGCACCTTCGGTCCAAAAGAACACCGAATCCACCC---AAAAAACAGGT
TAAAAAGCCAGCAACTCCTCTTACGAAAAAAGCATTATTTTATAGAATTTAGGATGTTTATGAAATTTCAAAAATCATAA
ATT---G-TTTTTTTACAAAATTACAATAAATCATAAGATT----TGAAAAAATGCATAATTCTCTAAA----ATATTTA
T-AATTATTTAAAAATATTCATGTATTTTGTAAAAAATGTTTAAAAACTAGGAAAACAAAAGAAACAGAAAAAAGAACAA
GCAGAAAGGCAAAAACCCGGACGAAGGAAGCAGCATGAATCCAGAAAAAGAAACGCATAAAAAGCAAAGGAAAACCGGGG
TCAGGAAACCAATGAAAAGAATCGGCCAAGATTAGTGGGATCCGTGCAAC-AAGAA-AAATGATATACCAATTTTGTGAC
AGAAATTAATTAAGGGTGTATATATGTGCGATGGTATTGTAAAACCTAATCGATTGGACTGGACCCTGTAAATAG-----
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>chr3A_1
CTGTTGGCCAGGACCAATAGCGCTGCAACGTTGCTCCTTTGGTCCAAAAGAAAACCGAATTCACCAAAAAAAAAA--GGT
TAAAAAGCCAGCAACTCCT--TACAAAAAA-GCATTATTTTATAGAATTTATGGTGTTTATGAAATTTCAAAAATCAGAA
ATT---A-TTTTTTTACAAAATTACAATAAATCATGAGATT----TGAAAAAATGCATAATTCTCTAAAATATATATATT
T-A-TTTTTAAAAAATATTAATGTATTTTGTAAAAAATGTTTAAAAAATAGGAAAACAAAAGAAACAGAAAAAA---CAA
GCAGAAAGGGAAAAACCCCGACGAAAGAAGCAGCATGAATCCAGAAAAAGAATCACACAAAAAGCAAAGGAAAACCGGGG
TCAGGAAACCAATGAAAAAAATCGACCAGAATGAGTGGGATCCGTGCAAGAAA-AA-AAATGATATTCCAATTTTGTGAC
AGAAATTAATTAAGGGTGTGTATATGTGCGATGGTATTGTAAAACCTAATTGATTGGACCGGACCCTATAAAAAGAACGC
CATCTATATATTCTATCCCCAACCCTAACTCTCGTACTACTCCGGATCGCGATCTCCCTCCCTGCCTGCTCTCTCACCGG
CGGAAGCAACAAGCATCGACGTGTGGTCGATCCACTTCAAGGTACGTACGGAGCTGTTCATTGTTGTTTTGGGCGTATCC
ATATTC---------TATGCTACTAGTGCGAGGATCTCATGTCGGTGTTTTCTAGGATTACATTGGATGGTTGTCTGATG
TAATTTGTTAATTGTTCATCTAATTATCAGTTACTCCCTCCGTCTTACTAAATCAGCGACACTTATTTTGGAAGGGAGAG
AGAGTAGATCTTAAGACAACGTTATAAACTGTTCAGCATCAGCTTTTCTTGGGAAGAAACTATCTTTATA----------
-CGTACTGCTCAACCTTTGTGACTTGATTTCTCCTGTTGCTTAACTGCGTACGAGCTTGAACCGTTGACGTTTTT--TTG
CATTGCTCTATAGCCTTAAATATATAA---GTGTCTAACGACTGCCAGTGTTCGGTTTTTGCTCATCCAGAACAATGAAC
ATCTTTGTCAATAACCCCAC--------CGGAACAGCGTTCCGGGTCTGGGTTCACCCATCAGACACCGTGTGTTCCGTC
ATGGAGAACATCCACAAGCGGTATCGCCTCATCTTCAATGGGGTGCAGCTACAGGATAACTGTAGATTGGC-CGATTACA
ACATCCAGGAGGACTCCACTCTTGACCTTGAAGAGAAGATGCAGATCCACGTGATGGAGACGCTGATGGGCAA---CACC
ATCGACCTTGACTTCAACAGCCTAGACACTATCGACGGCGTGAAGGCCAAGATCTATCGCCTCGAGGGCTTTCCTGTAGA
TCAGCAGTGCCTCCTCTTCGCCGGCAAGCGTCTAGAGAACGGGAACCGCACCTTGGCAGACCACAACATATGCATGGAGT
CCACGATACTCCTTGTCCTCCTCCCATGTATTCCGAGAGGACACATGATGCAGATCTTCGTGAAGGGGATAACTGGGAAG
ACCATCACTCTCCAGGTTGGGAGCTCGGACACCGTCGATAGTGTCAAGGTGAAGATCTATGAGAGGAACCACGCCC----
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-----------------CTTTCCCGAATGTGCAACGCCTCATCTTTGCTGGCAGGGCAGCTGGAGGGAGGGCGCACCTTG
GCGGACTCCAAGATTACAAAGCATTGCACCCTTCATTTGACTCTAGGGAGAGTAT--------ACCACACACTAAATGCT
CCCGTGATACCAATTTTGGAAAATCAATTTTAGATGTTTCAAAAAATACTGATTTTTTTTGTGGATGTTCACAGCATATG
TGACTACAACCCCTTAAAAAATCAAATCCAAATTTGAAAAACACATTAAGAAACAAAAATGAAAAATCTAGCATGAATAG
TGTCACAA--AGACAAAAGCCTATTCACATCTGGATTTGTCTTTTTTGTT-CTCAATGTGCATTTCGAATTTGAAGCTGA
AATTTTTAGGTGCTGTTGACACATACCTTATGAACATTCATGATTTATCTCACAATTTTTTGAAGCATTTAAAATTAAGT
TTTTTGAAATAGTATCATGGGAGCATTTAAGGTCTGGTATCACTAGATATTCTCCCCTCTAGGGAGAGTTTACGCCTTCA
TGGTGGTTGAGATGCATGGATGGCCGTCCAACCACTAGTTTTATTTTTGCTGGAGTCTTCCATCCAGCTGACATTAGCGG
TGTGTTGTGACTTATGAGT-AAAAACTATAATTCTACTACTATTAGTATATGTTGCTCCAATCTT-GTTGTTTTCAAGTA
CAGATGTGCTACCTGTTTC-------------------------------------------------------------
----------------------------------------------------------------AATAGTAGGGAAAAGC
CTGGTAATGTCATTCCAAAAACATTGCTACTCGCGCGGAGACCCTACATCGGTAGTATATACCGTTGAGGGTATCACTTA
TCGTTATATCTCGATCGGCTGCGTATTAAATGATTAATCGGAAATCAGACGATTAATCGATTTTATCGGTTGACTATTAT
TTGGCCTTTTTTTT-CAAATCTCAGGTTTTCAGCACTAAAATATGCTATTTTCAACAAAAAATAATATTGGACAGAAGTA
TTACCTTGATTCCTTTCCTTTGAACCCTTGTACAATGACAGAAAAAAGGACAACTGTACA-----TATTACATAACAAGA
TCTGCAAACACAAATATGCTCGTAGTTGTTGCAAATGCGACAAAAATGAACCACCGTGCAATCCTTAGATAGATGGTCAT
ATGAACTGCATTTGAAACACCAAAGACCCAATTTTTTTACTCTTCGTCAGATGGCCAATAGTGTCAAAAGAGGCCGAAGT
CGCCGCATTACCGTCTAGGGCTGATTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGACGTCCCCCTTGAGCTTGTTCTTGGGATGACGAGTGGGA
AGTGCTTTAGGCGCTTGTTTGTTGTTAGCACCAGATGACCGGTGCCGATGGCCATTGGACGAACGGTGTAGAGGTGGAGG
TCCAGCAGCCATACCAAAGCCGGCAGACAGTCTAGTCTTTGAAGGGAAAGTTGGAGCTGTTTGTCCTGTTGGCAGGGTCG
TCGCATGTGCGAGCTGTGAATGAATTTTTAGGTATTTAATTGGGATAAATGAATTTTGATTTCTAAAAAGGTGTAAATGA
ATTCTTAAAAAAATATGAAACTTGGCATGATCACATGGCATGCCCACGTGGTGTGTGTGGTAAAAAATGAGAGAGTTGCG
GAAAAATTGTGATGCACTTCGCTTAGAAACTGAACAGCATCCGGGAAATTATTCTAAAATAAATTAAGACTACTATTTAT
TAATTTTCTGGGAAGTATTCATACTTGTGGCAACTATTTTCTTAAAAATAATAATATATCTTTCAAAAATACTGATAATA
ACATGGCATCACCCACGGTGATGAATAGATGATAGTATTACTCACTGTTGGCCAGGACCAATAGCGCTGCAGCGTTTCTC
CTTCGGTCCAAAAGAAAATCGAATTCACCAAAAAAAACAGGTTAAAAAGCCAGCAACTCCTCTTATGAAAAAGCATTATT
TTATATAATTTAGGATGTTTATGAAATTTCAAAAATTGTAATTTAATTTTTTATACAAAATTACAATAAATCATGAGATT
TGAAAAAATGCATAATTCTCT-----------------------------------------------------------
---------------AAAATATTTATATTTTTAAAAAAATATTCATGTATTTTGTAAAAATGTTTAAAAACTAGGAAAAC
AAAAGAAACAGAAAAAAACAAGCAGAAAGGCAAAAACCCCGACGATCGAAGCAGCATGAATCCAGAAAAAGAAACGCATA
AGAAGCAAAGGAAAACCGGGGTAAGGAAACCAATGAAAAAATCGGCCAAAATGAGTGGGATCCGTGCAAGAAAAAAAATG
ATATTCCAATTTTGTGACAGAAATTAATTAAGGGTGTATATATGTGCGATGGTATTGTAAAACCTAATAGACTGGACCGG
ACCCTATAAAAAGAACGCCATCTATATATTCTATCCCCAACCCTAACTCTCGTACTACTCCGGATCGCGATCTCCTTCCC
TGCCTGCTCTCTCTCCGGCGGAAGCAACAAGCATCGACGTGTGGTCGATCCACTTCAAGGTACAGAGCTGGTCATTGTTG
TTTTGGGCGTATCCATATTCTATGCTACTAGCTAGTGCGAGGATCTCATGTCGGTGATTGCTAGGATCATCTCAGTTTTA
GATCTTAGGACAACGTTATAAACTGTTCATCACTAACTTCTTTTGGGAAGAAACTATCTTTATATGTACTGCTCCACCTT
GTGACAAGATTTCTCCCGTTGCTTAAGTACGTACCTGCTGGAATTGTTGACGTTTTTGTGCATTGCTCTATAGCTTAAAC
ATACAAGTGCCTAACGACTGCCGGTGTTTGGTTTTTGCTCATCCAGAACAATGAACATCTTTGTCAAGAACCCCACCGGT
AGAACCATCCGGGTCTGGGTGCACCCATCAGACACCTTCCGTTCCGTCAATGAGAAGATATCCAGAAGCGGTATCACCTC
ATCTTCAATGGGGTGCAGCTAGAGGATGACAGTACATTGGCCGATTACAACATCCAGCAGGACTCCACTATTGACCTTGA
AGAGAAGACGCAGATCTACGTGATGGAGACACTGATGGGCAGGATCATCAACAACCTTGACGTTGACATCCTAGACACTA
TCGACCGTGTGAAGGCCAAGATCTATGCCCTCCAGGGCTTCCCCATAGATCAGCAGTGCCTCATCTTCGCTGGCAGGCGC
CTAGAAAACGGGAACCGCACCTTGGCAGACCACAACATCTGCAAGGAGTCCACAATACTCCTTGTCCTCCACCCGTGTAT
TCCGAGAGGAGACATGATCCAGATCTTCGTGAAGGTGCTGACTGGGAAGACCATCACTCTCGAGGTTGGGAGCTTGGACA
CCATTGATAGCGTCAAGGTGAAGATCTATGAGAGGAACTACGCCCCTTTCCCGAAGGAGCAACGCCTCATCTTTGCTGCC
AGGCAGCTGGAGAGTGGCACCTTGGCGGACTACAAGGTTCATGAGGAGTGCACCCTTCATTTGTGTCTACGTCTTCGTGG
TGGTTGAGATGGATGGATGGCCGTGGCAACCACTAGTTTTATTTTGCTGGAGTCTTCCTTCCGGGTGAAATTTGTGGTGT
GTTTGTGACTTATGAGTAAAACTAACATTCTAGTGTGTTAGAATATCTTGCTCCAGTCTTGTTGCTTTCAAGTAGGGATG
TGTTACCAGTTACGAT
>chr3A_1
CTGTGGGCCAAGACCAATAGTGCTGTAGCGTTGCTCCTTCGCTCCAAAAGAAAACCGAATTCACCAAAAACAAAACATGT
TAAGAAGCCAGCAACTCCTCTTACAAAAAA-GCATT-TTTTATAGAATTTAGGATGTTTATGAAATTTCAAAAAGCATAA
ATTAAAATTTTGTTTACAAAATTACAATAAATCATGAGATT----TGAT-AAATGCACAATTCTCTAAA----ATATTTA
T-AAATTTTTAAAAATATTCATGTGTTTTGT-ACAAAATATTAAAAACTAGGAAAACAAAAGAAACAGAAAAAA-AG-AA
GCAGAAAGGCAAAACCCCCGACGAAAGAAGCAGCATGAATCCAGAAAAAGAAATGCACAAAAAGCAAAGGAAAACCGGGG
TCAGGAAACCAATGAAAAAAATCGGCCGAAATGAGTGGGATCCGTGCAAG-AA-AA-AAATGATATTCCAATTTTGTGAC
AGAAATTAATTAAGGGTGTATATATGTGCGATGGTATTGTAAAACCTAATCGATTGGACTGGACCCTATAAATAGAACGC
CATCTATATATTCTATCCCCAACCCTAACTCTCGTACTGCTCCGGATCG--ATCTCCCTCCCTGCCTGCTCTCTCTCCAG
CGGGAGCAACAAGCATCGACGTATGGTCGATCCACTTCAAGGTACA----GAGCTGGTCATTGTTGTTTTGCGCCTTTCT
ATTCTATATATCCTATATACTACTAGCTAGAGGATCTCATGTCGGTATTTTCTAGGATTACATTGAATGGTTGCCCGATG
GAATTTGTTCTTCAT----CTGGTAATCTCAGA-----------------------------------------------
----TAGAACTTAGAACAATGTTATAAACTGTTAATCATTAACTTTTCTTGGGAAGAAACTATCCTTATAA---ACTTAT
ATGTACTGCTCAAG---TGTGACTAGATTTCTCCTTTTGCTTATCCACGTACCTGCTGGAATTGTTGACGTTTTT--GTG
CATTGCTCTATAGCA-TAAATATATATAGTGTGTCTAACGACTGTCGGTGTTCGGTTGTTGCTCCTCCAGAACAATGAAC
ATCTTTGTCAATAACCCCAC--------CGGAACAGCGTTCCGGGTCTGGGTGCACCCATCAGACACCGTGTGTTCCGTC
ATGAAGAACATAGACAAGCGGTATCGCCTCATCTTCAATGGGGTGCAGCTACAGGATAACTGTAGATTGGC-CGATTACA
ACATCCAGGAGGACTCCACTCTTGACCTTGAAGAGAAGATGCAGATTCACGTGATGGAGACGCTGATGGGCAA---CACC
ATCGACCTTGACTTCAACAGCCTAGACACTATCGACAGCGTGAAGGCCAAGATCTATCGCCTCAAGGGCTTTCCTGTAGA
TCAGCAGTGCCTCCTCTTCGCCGGCAAGCGTCTAGAGAACGGGAACCGCACCTTGGCAGACCACAACATATGCATGGAGT
CCACGATACTCCTTGTCCTCCTCCCATATATTCCGAAAGGACACATGATGCAGATCTTCGTGAAGGGGATAACTGGGAAG
ACCATCACTCTCCAGGTTGGGAGCTCGGACACCGTCGATAGTGTCAAGGTGAAGATCTATGAGAGGAACCACGCCC----
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-----------------CTTTCCCGAATGTGCAACGCCTCATCTTTGCTGGCAGG-CAGCTGGAGGGAGGGCGCACCTTG
GCGGACTCCAAGATTACAAAGCATTGCACCCTTCATTTGACTCTAGGGAGAGTATCAGGTGATACCACACACTAAATGCT
CCCGTGATACCAATTTTGGAAAATCAATTTTA-------------------------------GATGTTCACAGCATATG
TGACTACAACCCCTTTAAAAATCAGATCCAAATTCGAAAAACACATTAAGAAACAAAAATGAAAAATCTAGCATGAATAG
TGTCACAAAAAGACAAAAGCCTATTCACATCTGGATTTGTCTTTTTTGTTTCTCAATGTGCATTTCGAATTTGAAGCTGA
AATTTTTAGGTGCTGTTGACACATACCTTATGAACATTCATGATTTATCTCACAATTTTTTGAAGCATTTAAAATTAAGT
TTTTTGAAATAGTATCATGGGAGCATTTAAGGTCTGGTATCACTAGATATTCTCCCCTCTAGGGAGAGTTTACGCCTTCG
TGGTGGTTGAGATGCATGGATGGCTGTCCAACCACTAGTTTTATTTTTGCTGGAGTCTTCCATCCAGCTGACATTAGCGG
TCTGTTGTGACTTATTAGT-AAAAACTATAATTCTACTACTATTAGTATATGTTGCTCCAATCTT-GTTGTTTTCAAGTA
CGGATGTGTTACCTGTTACTCCCTCCGTCCAGAAATACTTGTCATCAAAATAGATAAAAGGGGATGTATCTAGACGTGTT
TTAGTTCTAGATACATCTCTTTTTATCCATTTTGATGACAAGTATTTTCGGGCAGAGGGAGTACAATAGTAGGAAAAAGC
CCGGTAATGTCATTCGAAAAACGTTGCTACTCGCGCGGAGACCCTACATCGGTAGTATATACCGTTGAGGATATCACTTA
TCGTTATATCTCGATCGGTTGTGGATTAAATGATTAATCAGAAATCAGACGATTAATCGATTTTATCGGTTGACTATTAT
TTGGCCTTTTTTT--CAAATCTCAAGTTTTCAGCACTAAAATATGCTATTTTCAATAAAAAATAATATTGGACAAAAGTA
TTACCTTGATTCCTTTCCTTTGAATCCTTGTACAATGACAGAAAAAAGGACAATTGTACA-----TATTACATAACAAGA
TCTGCAAACACAAATACAC--AGTGTTAGGAATAGGCTCGATTTATCAGTATGTTCCCGATAAATCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGGCC
CACACG--------------------------------------------------------------------------
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----------------------------------------------------GTGCAAGGTGAAAACTGACGAACGCGAA
AAACAGGAGTTTAAGGGATTTGAACCTGCCACCGCCCACTCATTTGTGGGCGTGCTGCTAGCCAAAGGGCCTTTCGACAT
ATACTGACAGAAGTACAACACGATACTACAAGACCTAAAGACAGCCGC--------------------------------
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-------------------------------------------------------------------AAAACATAACACT
TGAAAACAATCATGAACAGATTTCCAAAAAAATGGAGCAAAATTTTGTACTCCC--------------------------
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>chr3B_30
-----------------------------GTTGCTCCTTCGCTCCAAAAGAAAACCGAATTCACCCAAA--AAAACAGGT
TAAAAAGCCAGCAACTCCTCTTATGAAAAA-GCATTATTTTATAGAATTTTGGATGTTTATGAAATTTCAAAAATCATAA
ATT---ATTATTTTTGCAAAATTACAATAAATCATAAGATTGATTTGAAAAAATGCATAATTCTCTAAA----ATATTTA
TTA-TTTTTTTAAAATATTCATGTATTTTGT-AAAAATGTTTAAAAACTAGGAAAACAAAAGAAACAGAAAAAA-AACAA
GCAGAAAGGGAAAAACCCAGACGAAGGAAGCAGCATGAATCCAGAAAACGGAACGAATAAAAAGCAAAGGAAAACCGGGG
TCAGGAAACCAATGAAAAAAATCGGCCAAAATGAGTGGGATCCGTGCAAG-AA-AAAAAATGATATTCCAATTTTGTGAT
AGAAATTAATTAAGGGTGTATATATGTGCGATGGTATTGTAAAACCTAATCGATTGGGCTGGACCCTATAAAAACAACGC
CATCTATATATTCCATCCCCAACCCTAACTCTCGTACTACTCCGGGTCG--ATCTCCCTCCCTGCGTGCTCTCTCTCCAG
CGGAAGCAACAACCATCGACGTGTGGTCGATCCACTTCAAGGTACA----GAGCTGTTCACTGTTGTTTTGGGCGTATCC
ATTC--TATATCCTATATACTACTAGCTAGAGGATCTCATGTCGGTGTTTTCTAGG-TTACATTGAATGGTTGCCTGATG
GAATTTGTTGTTCAT----CTGATAATCTCAGA-----------------------------------------------
----TAGAACTTAGAACAATGTTATAAACTGTTAATCATTAACTTTTCTTGGGAAGAAACTATCGTTATTATATACTTAT
ATGTACTGCTCAACCT-TGTGACTAGATTTCTCCTTTTGCTTATCCACGTACCTGCTGGAATTGTTGACGTTTTT--GTG
CATTGCTCTATAGCC-TAAATATATAA---GTGTCTGACGACTGTC-GTGTTCGGTTTTTGCTCATCTACAACAATGAAC
ATCTTTGTCAATAACCCCAC--------CGGAACAACGTTTCGGGTCTGGGTTCACCCATCAGACACCGTGTGTTCCGTC
ATGGAGAACATCCAGAAGCGGTATCGCCTCATCTTCAATGCGGTGCAGCTACAGGATAATCGTAGATTGGCTCGATTACA
ACATCCATGAGGACTCCACTCTTGACCTTGAAGAGAAGATGCAGATCCACGTGATGGAGACGCTGATGGGCAA---CACC
ATCGACCTTGACTTCAACAGCCTAGACACTATCGACGGTGTGAAGGCCAAGATCTATCGCCTCAAGGGCTTTCCTGTAGA
TCAGCAGTGCCTCTTCTTCGCCGGCAAGCGTCTAGAGAACGGGAACCGCACCTTGGCAGACCACAACATATGCATGGAGT
CCACGATACTCCTTGTCCTCCTCCCATGTATTCCGAAAGGACACATGATGCAGATCTTCGTGAAGGGGCTAACTGGGAAG
ACCATCACTCTCCAGGTTGGGAGCTCGGACACCGTTGATAGTGTCAAGGTGAAGATCTATGAGAGGAACCACGCCCCTGT
TAGAATAAATTCGAGGCATACCGTCGATCATCCGAGGACCAAGCAATCACACGAACACGACACCGAGATTTGTTAACGAG
GTTCACTGATATGGCTACATCCCGGGGCCTGACTACGGGCGCTCCTCCCCGTGACACCGTCACAATACCGCACCCGGTCG
CCCTGGACGCCGGCACATGCCGCCGGCTTTTCCTGCGTTCCGGTGCTATTATGTTGGCATAGGTTACATCGTGTGTCTAC
CCCCGCTATATAAGAGAGGCCTAGGATACAAGTGTCCTATTTGGACACGTCTCCATATCCTATCTAAACACAATACAACT
ACAAGTCCAACTGTAACCTACCTCGTACACTATATTCGACACAACTCCAACAAACTCCACCTTGGCGAATATTCTCCACC
ACCTTGAATTCATCAATGCGCCAAACTTCCATGTACATTGGACTTGAGCTTGTCCCATGAGCACCGCTACTACTCCAAAG
ACTCCATATGACTCAACCTGCAACTTGTAGTCCCTTCTTTTCTTGACCACAGTCAACAGTCGAGCAAAATTAAGTTCCTT
GTTGCTCTAGCTTGTTCTCCCAACTTCCAGAGTATCCGTCCAACGCAATCACACACTGATCACTGACCTGTGTGAAAATG
AACAACTCACATATTGGGTGTCACACGTAAGAGTTACCTGAACTCAACATCACCGCTCCTTTCTTGACCGCCTGTCTGAA
ACTTGAAGGAATTTCACCATTGCTTGTAGTCATCTCGACTCAAATTCGCAGTTGTCTCACCACATGTATGACCACCAGAT
CCCTGGCCCGTCTCCATGTCCCGTGCGTACCGCACGCCTCGCCGCTATTACCGCGTCGAGCCTCCGTTGTCCCGTTCGAG
TCTCAAGGGTCGCCAAACCACACCGCTCAACCCCCACTGCAGAGTACCATCGATCATCACCGAGCGATGACGAGTTTCAC
GTTTCCATCAGATCATTGGGCTCCAGTCCGAACTACGCGTCCCTCGCTTTTCCCCTCCACTGAATAGGCTTCGATTCTCT
GGATCCTTACACCGTAGCCCCTCAATCCAGCTCCACCTTCAACATGACTCCATGGTAGATGATCAGTCCATCCTGCGCCC
CGTCGACTTCAAGCTCACATGTGCACCGTCTTGAATCAACCCCGCGCCATAGTCTTGTCGAAGCCACACAAGCCCTCGGG
GCCTGCGCCACGTGTTTCCACGCCCCAGAAGTCGGTCACCATCAGCATCACGCTCCTATGTCGTCGTCGCCGATCCCACC
ACCGTCTTTTGTACCAACCGACTTGCGTCGATCCGTCAGACTGTTCAGTCCGACCCAGCCGAACTCGTTCGACTGTACAA
CATGCTCCAGACTCGACAAGCCTTGTACGCACGTCGCTGTCCACGCCACACACACGGTCCAAGCTATCTCAGCAAACTTG
ACCTGAAAAATTCTTCCATGCAAAGTTGACCCCACTGGATTCATTGTGCACAATTTTTCTATCTTCTTTTGCTAGTAGCT
TCTTCTTGCATGGCGTAGACCCTCCTTTTTTTCTCTCAAACAAATCTCCGTGCCTTTGATTCCTTCGGCTTAAGGAATAC
CACACGTATCAGTACCAACTCCGTATCGTCAACGCCTGGCCGCTGCTCGCCTCGGTAACCCAGCCCTCACGGCTGCACAA
GGGCCTAGCCCATCAAGATACGCACACAACCAGCCACCTGAGCCAGCCTGCCACGTCCTAGGCACGCCCACGAGCCACGT
TGACTACAGCTTCCCTGCATGGCTGCAACCCACCACCAACGCTCGAGTTGGACCGCGGCGCTTCGACTCCGCTAGCTGCT
ACACGCCCATACGCGACGCCCGCTAAGCGATTGCGAGTGTCCGCCGCGCCTGCTATCCGATCTCGCCGAGAACTCCCTGC
CGATTGCTTCTTCCAAACACGACGCCATCTTCCCGAATCTTCAACTCGAGCAACCTTGATCCACCGACGCGACAACTTCG
CTGCCATGTCTCCAATCACACACATTGCACCTTGTTAGATCCCATTGACAGCTTCCACGTGCTCTCCTCTAAATCAATGA
TCCGCAGCCTTCGAACAACCTAGCTCATGATACCACTTGTTAGAATAAATTCGAGACATATCGTCGATCATCCGAGGACC
AAGCAATCACACGAGCACGACACCGAGATTTGTTAACGAGGTTCATCGATATGGCTACATCCCCGGTGCCTGACTACGGG
CGCTCCTCCCCGTGACACCGTCACAATACCGCACCCGGTCGCCCTGGACGCCGGCACATGCCGCCGGCTTCCCCTGCGTT
CCGGTGCTATTATGTTGGCATAGGTTACATCGTGTGTCTACCCCCGCTATATAAGAGAGGCCTAGGATACAAGTGTCCTA
TTTGGACACGTCTCCATATCCTATCTAAACACAATACAACTACAAGTCCAACTGTAACCTACCTCGTACACTATATTCGA
CACAACTCCAACAACCTCTTTCCCGAATGTGCAACGCCTCATCTTTGCTGGCAGG-CAGCTGGAGGGAGGGCGCACCTTG
GCGGATTCCAAGATTACAAAGCATAGCACCCTTCATTTGACTC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TACGCCTTCG
TGGTGGTTGAGATGCATGGATGGCCGTCCAACCACTAGTTTTATTTTTGTTGGAGTCTTCCATCCGGCTGACATTAGCCG
TGTGTTGTAACTTATGAGT-AAAAACTACAATTCTACTACTATTAGTATATGTTGCTCCAATCTTTGTTGTCTTCAAGTA
CGGATGTGTTACCTGTTAC-------------------------------------------------------------
----------------------------------------------------------------AATAGTAGGAAAAAGT
CTGGTAATGTCATCCGAAAAACGTTGCTACTCGCGCGGAGACCCTACACCGGTAGTATACAACGTTGAGGATATCACTTA
TCGTTATATCTCGATCGGCTGGGAATTAAATGATTAACCGGAAATCAGATGATTAATCAATTTTATCGGTTGACTATTAT
CTGGCCTTTTTATTACAAATCTCAGGTTTTTAGCACTAAAATATGCTATTTTCAACAAAAAATAATATTGGACAGAAGTA
TTACCTTGATTCCTTTCCTTTGAATCTTTGTACAATGACATAAAAAAAGATAGCTGTACA-----TATTACATAACAAGA
TCTGCAAACACAAATACACATAGTGTTAGGAATAGGCCCGATTTATCAGTATGTTCCCGATAAACCGTTTGGCAGAGGAC
CTCCTATACGATGCATTTTGCGACATATAGGAAC----------------------------------------------
--------------------------------------------------------------------------------
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>chr3D_535
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------AGAACGC
CATCTATATATTCTATCCCCAACCCTAACTCTCGTACTACTCCGGATCG--ATCTCCCACCCTACCTGCTCTCTCTCCGA
CGGAAGCAACAAGCATCGACGTGTGGTCGATCCACTTCAAGGTACA----GAGCTGTTCATTGTTGTTTTGT--------
-------------------------GCTCGAGGATCTCATGTCGGTGTTCGCTAGGATTACATTGGATGGTTGCCTTATG
GAATTTGTTGTTCATGCATCTGATTATCTCAGC-----------------------------------------------
----TAGATCTTAGGACAATGTTATAAACTGTTCAGCATTAACTTTTCTTGGGAAGAAACTATCTTTATA----------
-TGTACTGCTCAACCTTTGTAACTTGATTTCTCCTGTTGCTTAACTACGTATCAGCTGGAATTGTTGACGTTTTT--GTG
CATTGCTCTATAGCC-TAAATATGTAA---GTGTCTAACGACTACTGGTGTTCGGTTTTTGCTCATCCAGGACAATGAAC
ATCTTTGTCAAGAACCCCAC--------CGGAACAACCATCCAGATCTGGGTTCACCCATTAGACACCTTCCGTTCCGTC
AAGGAGAAGATCCAGAAGCGGTATCACCTCATCTTCAGTGGAGTGCAACTAGAGGATGACAGTACATTTGC-CGATTACA
ACATCCAGCAGGACTCCATTCTTGACCTTGAAGAGAAGACACAGATGTACGTGATGGAGACACTAATGGGCAGGATAATC
AACAACCTTGACACTGACAGCCTAGACACTATCGACGACGTGAAGGCCAAGATCTATGACCTCGAGGGCTTCCCCATAGA
TCAGCAGTGCCTCATCTTCGCGGGCAAGCGTCTAGAGAACGGGAGCCGCACCTTGGCAGACCACGACATCTTCAAGGAGT
CCACAATACTTCTTGTCCTCCTCCCATGTATTCCGAGAGGAGACATGATGGAGATTTTCGTGAAGGTGCTGACTGGGAAG
ACCATCACTCTCAAGGTTGGGAGCTTGGACACCATTGATAGCGTCAAGGTGAAGATCTATGAGAGGAACTACGCCCCT--
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-------------------TTCCCGAAAGAGCAACGCCTCATCTTTGCTGGCAGG-CAGCTGGAGAGCG---GCACCTTG
GCGGACTACAAGGTTATGAATGAGTGCACCCTTCATTTGTGTC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TACGTCTTCG
TGGTGGTTGAGATGGATGGATGCCCGTGCAACCACTAGTTTTATTTT-GCTGGAGTCTTCCTTCCGGCTGAAATTAGTGG
TGTGTTATGACTTATGAGT-AAAAACTATCATTCTACTGTG-TTAGTATATCTTGCTCCAGTCTT-GTCC----------
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----------------------------------------------------------------CTTCAAAGTAGGGATG
TGTTACCAGTTA----
>chr3B_899
--------------------------------------------------------------------------------
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----------------------------------------------ACGTACCTGCTGGAATTGTTGACGTTTTTTTGTG
CATTGCTCTATAGCC-AAAATATATAA---GTGTCTAACGACTGCCGGTTTTTGGTTTTAGCTCATCTAGAACAATGAAC
ATCTTTGTCAAGAACCCCACGTCCCCACCGGAAGAACGATCCGGATCTGGGTTCACCCATCAGATACCTTCCGTTCCGTC
AAGGAGCAGATCCAGAAGCGGTATCACCTCATCTTCAGTGGGGTGCAGCTAGAGGATGACAGTACATTTGC-TGATTACA
ACATCCAGCAGGACTCCACTCTTGACCTTGAAGAGAAGACACATATCTACGTGATGGAGACACTGATGGGCAGGATCATC
AACAACCTTGAAGTTGACATCCTAGACACTATTGACGGCGTGAAGGCCAAGATCTATCGCCTCGAGGGCTTCCCCATAGA
TCAGCGGTGCCTCATCTTCGATGGCAAGCGTCTAGAGAACGGGAGCCGCACCTTGGCAGACCACAACATCCGCAAGGAGT
CCACAATACTCCTTGTCCTCCACCCGTGTATTCCGAGAGGAGACATGATCCAGATCTTCGTGAAGGTGCTGACTGGGAAG
ACCATCACTCTCAAGGTTGGGAGCTTGGACACCGTCGATAGTGTCAAGGTGAAGATCTATGAGTTGAACTACGCCC----
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-----------------CTTTCCCGAAGGAGCAACGCCTCATCTTTGCTGGGAGG-CAGCTCGAGAGCG---GCACCTTG
GCGGACTACAAGGTTACGAAGGAGTCCACCCTTCATTTGTGTC-------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------TACGTCTTCG
TGGTGGTTGAGATGGATGGATGGCCGTGAAACCACTAGTTTTATTTT-GCTGGAGTCTTCCTTCCGGCTTATATTAGTGG
TGTGTTGTGACTTATGAGT-AAAAACTATCATTCTACTGTG-TTCGTATATCTTGCTCCAGCCTT-GTCC----------
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----------------------------------------------------------------CTTTCAAGTAGGGACG
TGTTACCAGTTA----
>chr3D_945
--------------------------------------------------------------------------------
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--------------C-TAAATATATAA---GTGTCTAACGACTGCCGGTTTTTGGTTTTAGCTCATCTAGAACAATGAAC
ATCTTTGTCAAGAACCCCAC--------CGGAAGAACGATCCGGATTTGGGTTCACCCATCAGATACCTTCCGTTCTGTC
AAGGAGCAGATCCAGAAGCGGTATCACCTCATCTTCAGTGGGGTGCAGCTAGAGGATGACAGTACATTTTC-TGATTACA
ACATCCAGCAGGACTCCACTCTTGACCTTGAAGAGAAGACACAGATCTACGTGATGGAGACACTGATGGGTAGGATCATC
AACAACCTTGATGTTGACATCCTAGACACTATTGACGGCGTGAAGGCCAAGATCTATTGCCTCGAGGGCTTCCCCGTAGA
TCAGCAGTGCCTCATCTACGATGGCAAGCGTCTAGAGAACGTGAGCCGCACCTTGGCAGACCACAACATCTGCAAGGAGT
CCACAATACTCCTTGTCCTCCACCCGTGTATTCCGAGAGGAGACATGATCCAGATCTTCGTGAAGGTGCTGACTGGGAAG
ACCATCACTCTCGAGGTGGAGAGCTTGGACACC---------------------ATCTATGAGTTGAACTACGCCC----
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-----------------CTTTCCCAAAGAAGCAACACCTCATCTTTGCTGGCAGG-CAGCTCGGGAGCG---GCACCTTG
GCGGACTACAAGGTTACGAAGGAGTGCACCCTTCATTTGTGTC-------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------TACGTCTTCG
TGGTGGTTGAGATGAATGGATGGCCGTGAAACCAGTAGTTTTATTTT-GCTGGAGTCTTCCTTCCGGCTTATATTTGTGG
TGTATTGTGACTTACGAGT-AAAAACTATCATTCTACTGTG-TTAGTATATCTTGCTCCAGCCTT-GTCC----------
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----------------------------------------------------------------CTTTCAAGTAGGGATG
TGTTACCAGTTA----
>SNPs
--------------------------------------------------------------------------------
----------------------------------S---------S-----------------------------------
S------------S--------------------------------------------------S---------------
-----------------------------------------------------------------------S--------
----------------S---------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S-------------------------S-------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S----------SSSSSS----
--------------S-----------------------------------------------------------------
----S------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
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-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
-------------------S----------------S-------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S--S------------------------------
--S---------S------------------------------------------------------S------------
--------------------------------S-----------------------------------------------
------------------------------------------------------------SSSSS---------------
--------------S--------------------S---------------------------------------S----
----------------------S---------------------------------------------------------
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------------------------------------------------S----------------------------S--
----------------------------------------S---------------------------------------
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------------S-----------------------------S--------S--SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS--S-S----SS-----S--S----S---S-S----------------------------------
--------------------------------------------------------------------------------
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---------------------------------S---S-S-----SSSSS-S-S--------------------------
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----------------
>forward_337
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------AGAA
GCAGAAAGGCAAAACCG---------------------------------------------------------------
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>reverse_5436
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---------------------------------------------------------------------------CGGAC
CTCCTATACGATGCA-----------------------------------------------------------------
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----------------
