>input_sequence_72251
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--------------------------------------------------ATGGCGGCTTCGCTAGGACTTACCA---GC
CATGAAGCCTGCTGCACGGTCCACCCCACCGGCTCCTCCTTGTACAACTTCCAAGCCGATGACCCCTTCGTGGCAGCAGC
GGACGGTGCCGCGGAGCTGAGCTTCCCGGAGCTCGTGGAAGCCGCTCGGGCCTCCGACTACTCGCCGCTTCCGGCGTTCG
GCGTCGCTGGAGGCGAGACGATGAACATGTACGGGCGGAGCGTCGTCTTCCCTATGACGACCTCGTACTACTGCGACGGC
GCCGGGATGTTCGACGGCGACGCTTCGGCGAGGGGGAGATGGGGAGGGATCGGTGCTATGACCGGGCGGCCGTCGGGGAG
GATCGGGTTCCGGACTCGGTCGGAGGTGGAGGTGATGGACGACGGGTTCCGGTGGAGGAAGTACGGCAAGAAGGCGGTGA
AGAGCAGCCCCAACCTGCGGAACTACTACCGGTGCTCCGCCGAGGGGTGCGGGGTGAAGAAGCGGATCGAGCGCGACCGC
GACGACCCGCGCTACGTCCTCACCACCTACGACGGCGTCCACAACCACGTCACCCCCGGCAGCACGTCGTCGAGGGCAGC
GCCGGCGTACTCGGCGCCGACGGCGCCCGCTTGGACCTGGAGCGAGCTGCATGCGGCGGCG------------CACTCCT
CGGAGTCCTACTGA------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G129900
TGGCTACTCAATTGCTGGCTAGAGAGTAGGCTAGCTAGGTGTCGTTTGTCTGATAGACTACCCTGGTCAGGTGCACCGCA
TGTACACAAAATTAAGAGTTAGTGGGATTCGATCGACCGGC----CGGTGCGATGGACTTGACCGCGAACGCTCATTTGG
ACCCGAAATGTTCCTCAGCTGGATTTTGGGTGTACTCCTTCTCCACTGTTGCGGATTTGAGCGCCGCGTTGTCTCGTTGT
CTTTTCTTTTTAGGGGAGACGTTGTCTCGTTGTCATTGCACGTAGTACG------------TAGTATTTTTTTTCTTTAC
TTTCGCGGATCTGAGGCCGATGTTTATACGTACGT-----AGTATTATTTTCTCAC-------CAGAGCACCGATGTCTC
GTTGTCATTAC------------AAGTACGTAGTATTTCAGATCCGCAACAGTGCAGTACTACACCCCAAATCCAGCTGA
CGAAGATCGTGATGTACCGG------CCGATCGATCCGACTGCGAGGAACGTACATAGATGGATATA--TATCCT-----
-GTACGATCGTCGATGGCCGTGGCTGTGCAATGGCGGCGCTGCGC----GCCTGTGGCAACCGCCGGCGTACTGCAGCCA
ATTAAACCA---CGCGCGCCGGCCGGGG-----------------CAACGGTCCAGATGAATGATCCAAAGGCCACATTT
AAGTCTCCTCTTGACTAGCCAGGCC----ATTGCTTCTCCGGACTGCCCGGCCGCCCGG----CCGGCCGGTCCACGTCG
GGAATAATCCGAAAGCGCACGCGCACGTACGCCTCCATCACGGGCGCCAGAGCGATCAAATCGCCATGTGACTAGCTGAC
GCGACGCGACACCATCGGAACCTTCACCGTACGTACCCGCCA--TGAAGCATCCATGAAGCTCGCCGGCCGTTCGTGGGT
AGTATAAATCGCGGACCATGCCACGAGGAATTCCGTCAAAGCAGTTAGCTCAGGCCCACCGCCGCCCAG--CACTACCGG
TAACGTAGCACGCTAGTGCGTAGTCCGTAGCTCGTCTGTGCAGTGCACTTATGGCGGCTTCGCTAGGACTTACCA---GC
CATGAAGCCTGCTGCACGGTCCACCCCACCGGCTCCTCCTTGTACAACTTCCAAGCCGATGACCCCTTCGTGGCAGCAGC
GGACGGTGCCGCGGAGCTGAGCTTCCCGGAGCTCGTGGAAGCCGCTCGGGCCTCCGACTACTCGCCGCTTCCGGCGTTCG
GCGTCGCTGGAGGCGAGACGATGAACATGTACGGGCGGAGCGTCGTCTTCCCTATGACGACCTCGTACTACTGCGACGGC
GCCGGGATGTTCGACGGCGACGCTTCGGCGAGGGGGAGATGGGGAGGGATCGGTGCTATGACCGGGCGGCCGTCGGGGAG
GATCGGGTTCCGGACTCGGTCGGAGGTGGAGGTGATGGACGACGGGTTCCGGTGGAGGAAGTACGGCAAGAAGGCGGTGA
AGAGCAGCCCCAACCTGCGGAACTACTACCGGTGCTCCGCCGAGGGGTGCGGGGTGAAGAAGCGGATCGAGCGCGACCGC
GACGACCCGCGCTACGTCCTCACCACCTACGACGGCGTCCACAACCACGTCACCCCCGGCAGCACGTCGTCGAGGGCAGC
GCCGGCGTACTCGGCGCCGACGGCGCCCGCTTGGACCTGGAGCGAGCTGCATGCGGCGGCG------------CACTCCT
CGGAGTCCTACTGAACGGAGCTAC-------TGATCGACCAGTACGTAGCTGGTTCCCTTAGT--TTTTACGGTCGATTT
TACGGTT---------CGGATGAATGTATACGATTCGTTGCGCCGGTGGTGGTGTGCC----GTCACCGAATAATTCGGT
TGCTTTCCACGTCCATTGTGCACGCTGGAAACGCCGATCGACGGCGTGCATCATCGATCTGTAGAAAGAAAATAAATTGG
TGCACGAACAAATAAACAAGCGCACGTACGTACGGGGCCAATCATCCTTGGCAAGTTGGTAGGCTCCACA-------ATA
C-------------------------------------------------------------------------------
--------------------------------GAGTCCATCCAATCTTTCTGATCTCCTTAAAATAATCAAAATAATCAT
GCTCTCTATGTTCTGTGGACATAACTGCAAACAAACTGAGTTCGAACGAGT-------TGATCTAGCTAGGCTTGACACT
AAAATTCGAGCGGATACAAACTAAGCGAAGCTCAAGTTCGAGTTGTAGAAAGTGGCTAATGCTTATCTTGTAATGATCTC
AAGTCGCTTTTAAATTAGTTTCGAGGTAAATAACATATTTTTTCTTACTAATTTTAGATAATTTATT-AACTAGATAGGA
CGCAACACAACATAGAAGACCAATATAAAATATTATTCCAATCAAAATA--------------TTTTTCAAGGTAGTTTG
ATTTATTCTTTCTCAACTGAAGACTGATACTACTTAATAGCAAAAGTTCGTGGATGAGCTAACAAGA--GAAAAATAAGG
TGCATCTGCTCCCAAACCTTGGCAAAAAATAATAGGATAGTTAACACACTGGCCATGATC-------TTGAGGCCTAAAT
TTTCTCCAGCTTAATTAAGATTCAATGTTTGCTAGTAGATAAAATGAAGAAAGTCATACACAACATATATGATAG---TA
CACCCTCCGTCTCATATTAGTTG---CTAAAAT----GAATGTATCTAGATGCATTTCAGTGCTGACGA-----------
----CAACTAATATGGGACGAAGAGAGTAATAAATTATCTGATTTCCATTTAATATATATAGGATTATTTAGTATAATTG
TATCATATCA
>chr3A_1
TGGCTACTCAATTGCTGGCTAGAGAGTAGGCTAGCTAGGTGGCGCTTGTCTGATAGACTACCCTGGTCAGGTGCACCGCA
CGTACACAAAATTAAGAGTTAGTGGGATTCGATCGACCGGCCGGCCGGTGCAATGGACTTGACCGCCAACGCTAATTTGG
ACCCGAAAAGCTCTTCAGCTGGATTTTGGGTGTA------CTCCACTGTTGCGGATTTGAGCGCCG--------------
---------------------TTGTCTCGTTGTCATCACATGTACGTAG------------TATTATTTTCTTCAA----
TTTCGCGTATCTGAGCCCGATGTTTATACGTACGT-----AGTATTATTTTCTCGC-------CAGAGCACCGATGTCTC
GTTGTCATTACA------------------------------------ACAGTGGAGTACTACACCCAAAATCCAGCTGA
CGAAGATCGTGATGTACCGG------CCGATCGATCGGACGGCGAGGAACGTACATAGATGGATACA--TATACTTATCC
TGTACGATCGTGGATGGCCGTGGCTATGCAATGGCGGCGCTGCGCGCCGGCCTGTGGCAACCGCCGGCGTACTGCAGCCA
ATTAAACGA---CGCACGCCGGCCGGGGCCATCCATCGGCGGCCACAACGGTCCAGATGAATGATCCAAAGGCCACATTT
AAGTCTCCTCTTGACTAGCCAGGCCGGCCGTTGCTTCTCCGGACTGCCCGGCCGCCCGCCCGCCCGGCCGGTCCACGTCG
GGGATAATCCGAAAGCGCACGCGCACGTACGCCCCCATCACGGGCGCCACAGCGATCAAATCGCCATGTGACTAGCTGAC
GCGACGCGACACCATCGGAACCTTCACCGTACGTACCCGCCGCGTGAAGCATCCATGAAGCTCGCCGGCCGTTCGTGGCT
AGTATAAATCGCGGGCCATGCCGCGGGGAATTCCGTCAAAGCAGTTAGCTCAGGCCCACCGCCGCCCAC--CAC------
TAACGTAGCACGCTAGTA-------CGTAGCTCGTCTGTGCACTGCACTCATGGCAGCTTCGCTGGGACTTACCG---GC
CATGAGACCAGCTACCCGGCCCACCCGGCGGCCTCCTCCTTGTACAACTTCCAAGCCGGTGATCCCTTCGCGGCAGCGGC
GGGCGGTGCCGCGGAGCTGAGCTTCCCGGAGCTCGTGGACGCCGCTCGGCCCTCCGACTACTCGCTGCTTCCGGCGTTCG
GCGCCGCTGGAGGCGAGGCGATGAACATGTACGAGCGGAGTGTCGTCTTCCCTATGACGACCTCCTACTACTGCGACGGC
GCCGGGATGTTCGACGGCGACGCTTCGGCGAGGGCGAGAGGAGGAGGGATCGGTGCTATGGCGGGGCGGCCGTCGGGGAG
GATCGGGTTCCGGACTCGGTCGGAGGTGGAGGTGCTAGACGACGGGTTCCGGTGGAGGAAGTACGGCAAGAAGGCGGTGA
AGAGCAGCCCCAACCTGCGCAACTACTACCGGTGCTCCGCCGAGGGGTGCGGGGTGAAGAAGCGGGTCGAGCGCGACCGC
GACGACCCGCACTACGTCCTCACCACCTACGACGGCGTCCACAACCACGTCACCCCCGGCAGCACGC---CGAGGGCGTC
CCCGGCGTACTCGGCGCCGGCGGCACCCGCTTGGACCTGGAGCGAGCTGCATGCGGCGGCGGCGGCGGGGGCTCACTCCT
CGGAGTCCTACTGAACTGAGCTAC-------TGATCGATCAGTACGAGTACGTAGCTGTGGTTAGTTTTATGATCGATTA
CGGTTCAGAAATCTCACGGATGCATGTATACGATTTGTTGCCTTGATGGTGGTGTGCCTGCCGTCACCGAATAATTCGGT
CGCT-TCCACGGCCATTGTGCACGGTGGAAACGCCGATCGACGGCATGCAGTATCTATCTGTAAAAAGAAAATAAATTGG
TGCACGAACAGGTTAACAAACGCACATACGTATGGCAATCATTCA--TTGGCAAGTTGGTAGGCTCCACATACCACAATA
C-------------------------------------------------------------------------------
--------------------------------TAATCCGTCCATCCTTTCAGATCCTCTTAAAATAATGTAGTTCTACGA
AGTTTTGT---------------ACTGTAAATGAGTTGAGTTCGAGCGAGC-------TGAACTAGCTATGCTCGGCACT
AATATTCGAGCGACTTCAAACAAATCGAAGCTCAAGGTCAAGCTATAAAAGTGGCC-------CAGCTTGTAATGATCCC
AAGTTGATTTTAAACTAGTTTCG-GCTAAATAAC----TTTTTTTTACTAATTTTAGATAATTTTTCGAACTAGATAGGA
CACAACACAACATAGGAAACCAATATAAAATATTATTCCAATCAAAATGATGATAATATAATTTTTTTCAAGGTAGTTTG
TTTTATTCTCTCTCAATTGAAGACTGGTACTACTTAATAGCAAAAGATCGTGGATGAGCTAACAAGAGAGAAAACAAAGG
TGCATCTGCTCTCAAACCTTGGCAACAAATAACAGGATAGCTAACACATTGGCCATGTATCATCTTGTTGTGGCCTAAAT
TTTCTCCAGCTTAATTAAGATTCAATGTTTGCTAGTAGATAAAATGAAGAAAATCATACACAAACACAACATATATGATA
CACCCTCCGTCCCATATTAGTTGTAGATGAAATGGATATATGCATCTAGATGCATTTCAGTGCT----------------
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>chr3D_1
TGGCAACTCAATTGCTGGCTAGAGAGTAGGCTAGCTAGGTGTCGCTTGTGTGATAGACTACCCTGGTCAGGTGCACCGCA
CGTACACAAAATGAAGAGTTAGTGGGATTCGATCGACCGGCC----GGTGCGATGGACTTGACCGCGAACGCTCATTTGG
ACCCGAAAAGCTCGTCAGCTGGATTTTGGGTGTG------CTCCACTGCTGCGGATTTGAGCGCCC--------------
---------------------ATGTCTCGTAGTAATTATAATCACACGTACATACTAGTACTAGTATGTTTTTTCTTCAC
AAT-GCGGATCTGAGCCCGATGTTTATACGTACACAGTACAGTATTATTTTCTGATCAGACATCAGAGCACCGATGTCTC
GTTGTCATCACAGTTGCGACCTTAAGTACGTAGTATTTCAGATCCGCAACAGTGGAGTACTACACCCAAAATCCAGCTGA
CGATGATCATGATGATGATGTACCGCCCGATCGATCGGACGGCGAGGAACGTACATAGATGGATATATTTATATATATCC
TGTGCGATCGTCGATGGCCGTGGCTGTGCAATGGCGGCGCTGCGT----GCCTGTGGCAACCGCCGGCGTACTGCTGCCA
ATTAAATCGCGCCGCGCGCCGGCCGGGGCCATCCATCGGCGGCCATAACGGTCCAGATGAATGATCCAAAGGCCACATTT
AAGTCTCCTCTTGACTAGCCCGGCC----GTTGCTTCTTCGGAT---------GCCCGGCCGCCCGGCCGGTCCACGTCG
GGAATAATCCGAAAGCGCACGCGCACGTACGCCTCCATCACGGGCGCCAGAGCGATCAAATCGCCATGTGACTAGCTGAC
GCGACGCGACACCATCGGAACCTTCACCGTACGTACCCGCCA--TGAAGCATCCATGAAGCTCGCCGGCCGTTCGTGGGT
AGTATAAATCGCGGGCCATGCCACGGGGAATTCCGTCAAAGCAGTTAGCTCAGGCCCACCGCCGCCCACACCACTACCGG
TAACGTAGCACGCTAGTA-------CGTAGCTCGTCTGTGCAGTGCACTCATGGCGGCTTCGCTAGGACTTACCACCAGC
CATGAAGCCTACTACTCGGCCCACCCGGCGGCCTCCTCCTTGTACAATTTCGAAGCCGGTGATCCCTTCGTGGCAGCGGC
GGACGGTGCCGCGGAGCTGAGCTTCCCGGAGCTCGTGGAGGCCGCTCGTGCCTCCGACTACTCGCCGCTTCCGGCGTTCG
GCGCCGCTGGAGGCGAGACGATGAACATGTACGGGCGGAGCGTCGTCTTCCCTATGACGGCCTCGTACTACTGCGACGGC
GCGTGGATGTTCGAGGACGACGCGGCGGCGAGGGCGAGAGGAGGAGGGATCGGTGCTATGGCAGGGCGGCCGTCGGGGAG
GATCGGGTTCCGGACTCGGTCGGAGGTGGAGGTGATGGACGACGGATTCCGGTGGAGGAAGTACGGCAAGAAGGCGGTGA
AGAGCAGCCCCAACCTGCGCAACTACTACCGGTGCTCCGCCGAGGGGTGCGGGGTGAAGAAGCGGGTCGAGCGGGACCGC
GACGACCCGCTCTACGTCCTCACCACCTACGACGGCGTCCACAACCACGTCACCCCCGGCAGCACGTCGTCGAGGGCGGC
GCCGGCGTACTCGGCGCCGACGGCGCCCGCTTGGACCTGGAGCGAGCTGCAAGCGGCGGCG------------CACTCCT
CGGAGTCCTACTGAACTGAGCTACCGAATACTGATCGACCAGTACGGAGCTGGTTACCTTGGT--TTTTATGATCGATTA
CGGTTCAGAAATCTCACGGATGCATGTACACGATTTGTTGCCTTGATGGTGGTGTGCC----GTCACTGAATAATTCGGT
CGCT-TCCACGTCCATTGTGCACGATGGAAACGCCGATCGACGGCATGCAGTATCTATCTGTAAAAAGAAAATAAATTGA
TGCACGAACAGGTTAACAAACACACATACGTACGGCAATCATTCA--TCGGCAAGTTGGTAGGCTCCACATACTTACTCG
GTTACTAAATATAAGTATTTTTAGAGTGTACATTTACTCATTTTGTTTCGTATGAGTCTGCATTGGAATCTATACGAGGA
GTTATATTTAAAAATGAAGGGAGTATCACAATGAATCCGTCCGTTCTTTCAGATCCTCTTAAAATAATGTCGCTCAATGA
GCTTTC--------GTGGACAAGACTGCAAAGGAGTTGAGTTCGAGCGAGTTGAATGTTGAACTAGCTAGGCTCGGCACT
AAAATTCGAGCGACTCCAAACTAATTGGAGCTCAAGGTCAAGCTATAAAAAGTGGCTCATGCTCAGCTTGTAATGTTCTC
AAGTCGATTTTAAACTAGTTTCGTGCTAAATAACATTTTTTTTCTTACTAATTTTAAATAATTTTTTAAACTAGATAGGA
CAC-ACACAACATAGTAAACCAATATAAAATATTATTCCAATCAA-ATGATGATAATATAATTTTTTCCAAGGTAGTTTT
ATTTATTCTCTCTCAACTGAAGACTAGTACTACTTAATAGCAAAAGATCGTGGATGAGCTAACAAGAGAAAAAACAAAGG
TGCATCTGCTCTCAAACCTTGGCAA-AAATAACAGGATAGTTAACACATTGGCCATGTACCATCTT---GAGGCCTAATT
TTTCTCCAGCTTAATTAAGATTCAATGCTTGCTAGTAGATAAATTGAAAAAA-TCATACACAACATAT-----TATGATA
CACCCTCCATCCCATATTAGTTGTAGCTGAAAT----AGATGTATATGAATGCATTTCACTGCTAGATACATCTGTTTAA
ATGGCAAGTAATATGGAATGGAGAGAGTAATAAATTATCTTATTTTCATTTAATATATA-AGCATTATTTAATATAATTA
TATCATATCA
>SNPs
--------------------------------------------S-----------------------------------
S-------------------------------------------------------------------------------
--------S-S--S--------------------SSSSSS--------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS----------------S--S---SSSS-----------------------------S--
---------------S----------------------------------------------------------------
------------------------------------------------------S------------S------------
------------------------------------S---S-------------------------------S-------
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-----------------------------S--------------------------------------------------
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--------------S----------S------------------------------------------S-----------
-----------------SSSSSSSS------------------------S------------------------------
-------------S-S---S------SS-S-S--------------------------S---S--------------S--
---------------------------------------S----------------------------------------
---S----------------------------------------------------------------------------
----------------------------------S----S-S------------------S-S-----------------
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-------------------S---------------------------------------------S--------------
----------S------------------------------------------------------------------S--
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----------------S-----------------------------S-------------S---------S-S------S
SSSSSSS---------------S------------S-----SSS-S----------------------------------
S---S-------------------S--------------------S----SS---S-------S----------------
----------SS-S-----S-----S---------SSSSS--SSSSS---------------------------------
--------------------------------------------------------------------------------
----------------------------------S---S----S------S----SS-----------SS-SS-S-S-SS
---S--SSSSSSSS-------SS--------SS-SS---------S---------------S-----------S-S----
------------SS-S--------S-----------S--S--S-S--S---------S-----S-S--------------
------S-------S--------S-S----------S---------------------------S---------------
-S-------------S-S------------------------------S-------------------------------
---------S----------------S-------------------S---------------------------SS----
-----------S-------------S------S---------------S--------SS---------------------
----------------------------------------------------S----------------SSSSSS-----
-----------S----------------S--------SS-------------------------SSSS------------
-------S--------S-S-S-------------------S----S-------------S--S--------S-------S
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>forward_244
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----------------------------------------------------------------CGCGTTGTCTCGTTGT
CTTT----------------------------------------------------------------------------
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>reverse_2026
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-------------------------GTACGTACGGGGCCAATCAT-----------------------------------
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