>input_sequence_72250
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------------------------------------------------ATGAAGCTCTTCACTGTCATGTTTTTCTAC--
----GTCCTCCTCCTTGGCATCTATACACCACCAAGTCTATCAGACGGTCCACCACTTCAAGATGTGTGCCCTATGGCGC
CTCAGGGTGAAAGGAAGCTGTTCATGAACGGTTTCCTCTGCAAGCACCCTAGCACCATTCTGGCTTCCGATTTCAAGACA
TTGCTTCTCAACCATGCCGGGAAACTAGACAACATGGTCCGGTCATCAACGAACATCATCACCGCTGCCGAGTTCCCTGG
CCTCAACACCCTTGGCATGTCCATGGCACGGACCGACATCGACCCGTATGGGCTAGTGCTTCCCCAC--------TCTCA
CCCAAGGGCGTCTGAGATGATGTTTGTCCATGATGGCAGTGTGCTGGCCGGTTTCTTTGACACAACCGGTAAGCTGTTTC
AGAAGAGACTATGTAAGGGGGATGTGTTCATCTTTCCCCGTGGTTTGGTTCATTTCATCATGAACTATGGTTTCCGTCTT
GCAACGACGTTCTCGGTGCTTAACAGTCAGAACCCTGGTGTGGTTGGCATCACCCATGCAATGTTTGCGCCAGATTCAGA
TGTAGTTGAGG-GGCTGGTGGCCAGAATGATGAAGTTCAGAGAGATGGAAATCTCTGACAACAAGACTACTGATTTTCCA
TGGACTTCCTGA--------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G075000
GGATTTTGTTTTTTCTATTACGGACCCTCTCGCTCATTCTCCGGCGAGCTGTGGCCCATTGTGGGAGTGTACCCGGGCAG
GTAATCCTGCACTGGGGGCCCACTACAAGCCCGTGACGAGTGGTTTGGTAGGTTGT-GGTGTTGGGCTTACTTTCAGATT
GCGAGTGGCCTCCCCACC--------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ACCGCCGACGCGAGCTCCGGCGCATCCTGCGGCGGCGGCGATGTCG
ACCCTCTTCC-GAAACCTTCCGTTCGCACGCCACTGCTGTTCCCTACCTGCGCATTTGCCCCCGCAGCGGCTGCCGCTCC
CGTCTCCAGCGAGTCCCCGCGGGGTGGTACCTCACTGCT-----------------CCTCCGCGTCCAGATTCCAGAAGG
TGAATCTTCTTCTCCTCCTTCCGGTGATGGCGGCCAGTAGATGCGTAAATTGTAGCAAATGAACCCTTCTGCACCATGAC
TGTTGCCGATTCTCCAGCTTCTATGAAATCTGATGATATGCCTTCGTTATAGCATTGCACGTTCAGAAGCAGCAGAGCTT
GTTCAGCCAGACTTTGCTTGATCTCTTCGTGAGCATCAGTTTCTGAAAAAAAACCATTTTTTACCAGTGAGTGGGC--GA
TGAGCGTCTCCTCAAATACAATTACTAACTACAGATTGCCAACT------------------------------------
---------------------------------------AGTATCACTTTACCACGGGAACGCTAATTGAGCACCATATA
CAATAG--GCATTACTGCAGCC--TG---------CCAAGTCTGAAGCATTTTCAGAATCAGCATAATAATTTTTCTAGA
TTTGC----------AGCCTGGAGATGAAACAAATGGCGACCTAGGGGCATCGTTAGAATCT-AAAAGCTTCATGTTAAC
ACCTTCACCCTTTTGCCACAATTCAGAGATTG-------------TTACTTTGGCCACAATCCGAAGCAAATTCTGTAGT
GAACTCCAAGAAATCTGATACAGGTTGCACACACTTGGCTTTGGTTACACTCCTTTCTCGTCACATTATTTAA-------
-----------ACCCACAATTCTCTACTCCA-TCTCTGTGTCTAAGAGATGAAGCTCTTCACTGTCATGTTTTTCTAC--
----GTCCTCCTCCTTGGCATCTATACACCACCAAGTCTATCAGACGGTCCACCACTTCAAGATGTGTGCCCTATGGCGC
CTCAGGGTGAAAGGAAGCTGTTCATGAACGGTTTCCTCTGCAAGCACCCTAGCACCATTCTGGCTTCCGATTTCAAGACA
TTGCTTCTCAACCATGCCGGGAAACTAGACAACATGGTCCGGTCATCAACGAACATCATCACCGCTGCCGAGTTCCCTGG
CCTCAACACCCTTGGCATGTCCATGGCACGGACCGACATCGACCCGTATGGGCTAGTGCTTCCCCAC--------TCTCA
CCCAAGGGCGTCTGAGATGATGTTTGTCCATGATGGCAGTGTGCTGGCCGGTTTCTTTGACACAACCGGTAAGCTGTTTC
AGAAGAGACTATGTAAGGGGGATGTGTTCATCTTTCCCCGTGGTTTGGTTCATTTCATCATGAACTATGGTTTCCGTCTT
GCAACGACGTTCTCGGTGCTTAACAGTCAGAACCCTGGTGTGGTTGGCATCACCCATGCAATGTTTGCGCCAGATTCAGA
TGTAGTTGAGG-GGCTGGTGGCCAGAATGATGAAGTTCAGAGAGATGGAAATCTCTGACAACAAGACTACTGATTTTCCA
TGGACTTCCTGATTAGTTATGTAACTAATCAAGATAGTGGATCTAATTATTATGAAATTTACCCGCAGATGATGATTTGC
ACATTTCAATCTTGTTATGTATTTGGACAGAATCTCAGTCTAGTAATGT-TATGTACTCAATGATGTAAATACCATGTGA
TGTAGCTGATTAATTTCTGTAGGAAACTAGGAAT----------TATAAAGATAAGAACCGCG-----------------
----------GCACATAGATTGGGAC-----CCTTCTATCTGTTTACCTTACAGGTTGGTTGTTTAGCCTGAA-CCCTGT
TGTGATAATAATA------ATGATCCTGGACGCTATGCATTATCTCTCCATGGTGTTGTTTCTATCTCATTAGTGTCGCA
CATGCACAACCAAGTTTTGCAACCTTATGTAAGCTGTGACATGAGATTTTTGTCAAGCGACAGCAAGCCAGTCTCTTTGG
TTCAGCATCACCAAGGTTGGCATCCTCTGGACTGTATGTATCGTAGCCTTGCTTTTCCTTTTGCTTTACTCAGTGGAACT
CTATACTGTTTTTTTAGTATTGTTATC-TTTTGCTCTTTGCTGTTGA--GGAGGTCCCTTTCTTTTCCCTGCCTTCTTTT
GAAAGTGAAGCTTATTTTTTTATTCTCTCTTCATGGAAAGTTTG------------------------------------
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------------------------------------------------------------------------------AT
TCATATAGGTATATACCTATGATGCCACTTACGCATTTGTGCAAGGATTATCCTACCAATCAACTAGCTACTCGTGCATA
GGATTCTG----AGCACTCGGCAGCGAGGTGAACAGGTTGAGCTTACCGAGGTCTGAAGAATAATCCAGAGGGAACGAAT
GGCTACTCGACTGCGCCCTGAATTCACACCAGTGGCATTGTAAGCAGCACAACTTCTATCTGACTAGATTTGCAAAAATG
-TTGTCAAATCTGATGTCATATACCCTGATAATAGGGAGCATTACATGGTCACAGCAGTAGCAAAGATAGTTCAGTCAGA
CTTGACGCCCTCTAGTCAGGGTGGACACGGTCCGGGCCGGTCCGGTCCCGGTCCGAGCCGCCGT
>chr3A_54
-----------------------------------------------------GCCCATTGCGGGACTGTACC-GGGCAG
CTAATCCTGCACTGGGGGCCCACTACAAGCCCGTGACGAGTGGTTTGGTAGGCTGT-GGTGTTGGGCTTACTTTCCGATT
GCGAGTGGCCTCCCCACC--------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ACCACCGCCGGGAGCTCCGGTGCATCCTGCGGCGGCGGCGATGTCG
ACCTTC-TCC-GAAACCTTCCGTTCGCACGCCACCGCTCTCCCCTACTTGCGCATTTGCCACCGCAGTGGCTGCTGCCCC
GA----------------------TGGTACCTCACTGCCGCCTTCGACCTTGGGCACCTCCGCATCCAGATTCCAGAAGG
TGAATTTATTTCTCCTCCTTCCGGTGATGGCGGCTAGTCGATGCGTAAATTGTAGCAAGCGAACTCTTCTGCACCGTGAT
TGTTGCCGACTCGCCAGCTGCTATGAAATCTGATGATATGCCTTCGTTATAGCATTGCA--------------------T
GTTCAGCCAGACTTTGGTTGATCTCTTCATGAGCATCAGTTTCTGAAACAC-ACCATTTTTTACCAGTATAAGTGAGTGA
TGAGCGTCTCCTCGGATACCAGTACTAACTACAGATTGCCAAC-------------------------------------
-----------------------------------------TATCTCTTTACCACGGGAACACTAATTGAGCACCATATA
CAATAG--GCATCACTGCAGCATATG---------CCAAGTCTGAAGCATTTTCAGAATCAGCGTAATGTTTTTTCTAGA
TTTGCAGCCTC-GGTAGCCTGGAGATGAAACAAATGGCGACCTAGGGGCATCGTTAGAATCAAAAAAGCTTCATAGTAAC
ACCTTCACCCTTTTGCCACAATTCAGAGATTG-------------TTACCTTGGCCCCAATCCGAAGCAAATTCTGTAGT
GAACTCCAAGAAATCTGATACAGGTTGCACAGACTTGGCTTTGGTTTCACTCCTTTTCCATCACATTATTTAA-------
-----------ACCCATGATTCTCTACTCCC-TCTCTGTGTCCAAGAGATGAAGCTCTTCACCGTCATGTTTTCCTAC--
----CTCCTCCTCCTTGGCCTCTATACACCACCAAGCCTGTCAGACAGTCCACCTCTTCAAGATATGTGCCCTATGGCGC
CTCAGGGTGAAAGGAAGCTGTTCATGAACGGCTACCTCTGCAAGCACCCTAGCACCATACTGGCTTCTGATTTCAAGACT
TTGCTTCTCAACCATGCCGGGAAACTAGACAACGTGGTC---------------ATCGTCACCGCTGCCGAGTTCCCTGG
CCTCAACACCCTTGGCATGTCCATGGCACGGACCGACATCGACCCGTATGGGCTAGTGCTTCCCCAC--------TCTCA
CCCAAGGGCGTCTGAGATGATGTTTGTCCATGATGGCAGGGTGCTGGCTGGTTTCTTTGACACAACCGGTAAGCTGTTTC
AGAAGAGACTATGTAAGGGGGATGTGTTCATCTTTCCCCGTGGTTTGGTTCATTTCATCATGAACTATGGTTTCCGTCTT
GCAACGACGTTCTCGGTGCTTAAAAGTCAGAACCCTGGTGTAGTTGGCATCACCCATGCAATGTTCGCGCCAGATTCAGA
TGTAGTTGAGG-GGCTGGTGGCCAGAGTGATGAAGTTCAGAGAGATGGAAATCTCCGACAACAAGACTACTGATTTTCCA
TGGACTTCCTGATTAGTTATGTAACTAATCAAGATAGTGGATCTAATTATTATGAAATTTACCCGCAGATGATGATTTCC
ACGTTGCAATCTTGTCATGTATTTGGACAGAATCTCAGTCTAGTAATGT-TCTATACTCAATGATGTAAATACCATGTGA
TGTAGCTGATTAATATCTGT--------AGGAAACTAGGAATTATATAAAGATCAGAATCGCG-----------------
----------ACGCATAGATTGGGACCATAGCCTTCTATCTGTTTAGCTTACAGGTTCGTTGTTTAGCCTGAA-CCCTGT
CATGATAATAATA------ATGATCCTGGACGCTATGCATTATCTCTCTATGGTGTTGTTTCTATCTCATTAGTGTCGCA
CAAGCACAACCAAATTTTGCAACCTTATGTAAGCTGTGACATGAGATTTTTGTCAAGCGACACCAAGCCAGTCTCTTTGG
TTCAGCATCACCAAGGTTGGCATCCTCTGGACTGTATGTATTGTAGCATTGCTTTTCCTTTTGCTTTACTCAGTGGAATT
CTATACCGTTCTTTTAGTATTGTTATC-TTTTGCTCCTTGCAGTTGA--GGAGGTCCCTTTCTTTTCCCTGCCTTCTTTT
GAAAGTGAAGCTTATTTTTT-ATATACATGAATCAAACTTTCAGCGAATCTGAATCTATTGAACATTTATTTTTTAATTG
TGTCGTTGCGATAGAACTATGGAGAGTGATTTTTGATATATCCAATAAGCGCGCTGGAATGTCCATTGATGACATGCTAG
CCTGGTGGTTGAATAACAAAAATCACCCAGCGGACTGTTTGCTACATTCTGCTGTTCTTTGGACTCTGTGGAAATATCGT
AATGACATATGTTTCAATCATGTCCCCTGGCTTGGGATGCAGGTTCTGTGGAGGAAAACTGCTTATACACTAGGCAGTTG
GATGGTTCGATGCTCTGGCCCTGTCAAAGAAAGGGTGATGCACTTGGTAAGAAAGCTGGAGCAGGAAGCGCGAGCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTTGGCCCACTCCTTCGTC
GCGGCTCCCGTTTCCCTTTCTTTGCTGGTTGGTAGTACCTCTGAGACTAGCTTTTTTCTCTTTTAGTAGTTAAGTTTTTG
GCGTTCTGCCTGTTGAGGCTTGGACAACTCTATTTGCTGGGGCAGCGTGTGTGCTGTATATCCCCCCCGCGTGCTTATAA
CAGAGATGCTGGTTGTTCTAGGGTTTCATTTGGTAATACAAATGGAGCCGGGGCAAGAGCCCTTTTCCTCTAAAAAAAAT
TCATATAGGTATATACCTTTGATGCCACTTACAGATTTGTGCAAGGATTATCCTACCAATCAACTAGCTACTCGTGCATA
GGATTCTG----AGCACTCGGCAGCGAGGTGAACAGGTTGAGCTTACCGAGGTCTGAAGAATAATCCAGAGGGAACGAAT
GGCTACTCAACTGCGCCCTGAATTCACACCAGTGGCATTGTAAGCAGCATAACTTCTATCTGACTAGATTTGCAAAAATG
-TTGTGAAATCTGATGTCATATACCCTGATAATAGGGAGCATTACATGGTCACAGCAGTAGCAGAGATGGTTCAGTCAGA
CCTGACACCCTCTAGGCA----------------------------------------------
>chr3D_87
CTGCACTG------------------------------------------------------------------------
-------------GGGGGCCCACTACAAGCCCGTGACGAGTGGTTTGGTAGGTTGTGGGTGTTGGGCTTACTTTCTGATT
GCGAGTGGTCCCCTTCATGCGCCATGAATTTAGAACCTCCAATGTCGAGGCTCACAAACTTGCAAAGCATGCCTTAACGC
TGGGTACTGGTCGCCATGCTTGGTTTGGTCAGTCCGGAGATCTTGTTTTCGTCCCTGTAAACCTCGTGACGGATGAATAA
AAAGCTTTGTGGGTTTGCCTAAAAAAAAAAAACTACCGCCGACGAGAGGTCCGGCGCATCCTGTGGCGGCGGCGATGTCG
ACCCTC-TCCCGAAACCTTCCGTTTGCACGCCATTGATCTTCCCTACTTCCGAAGC------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------AGCAGAGCT--------------------T
GTTCAGCTAGTCTTTGCTTGATCTCTTCATGAGCATCAGTTTCTGAAGCAC-ACCATTTTTTACCAGTGAGTGGGC--GA
TGAGCGCCTCCTCGGATACCATTACTAACAACAGATTGCCAACTACTCCCTCCGTCCCATAATATAAGAGCGTTTTTGAC
ACTAGTGTAGTACCAAAAACACTATTATGGAACGGAGGGAGTATCACTTTACCACGGGAACGCAAATTGAGCACCATATA
CAATAG--GCATTACTGCAGCC--TG---------CCAAGTCTGAAGCATTTTCAGAATCAGCGTAATAATTTTTCTAGA
TTTGCAGCCTCAGGTAGCCTGGAGATGAAACAAATGGCGACCTAGGGCCATCATTAGAATCT-AAAAGCTTCATATTAAC
ACCTTCACCCTTTTGCCACAATTCAGAGATTG-------------TTACTTTGGCCACAGTCCGAAGCAAATTCTGTAGT
GAACTCCAAGAAATCTGATACAGGTTGCACAGACTTGGCTTTGGTTTCACTCCTTTCTCATCACTTTATTTAA-------
-----------ACCCATGATTTTCTACTCCCATCTCCGCGTCCAGGAGATGAAGCTCTTCACTGTCATGTTTTCCTAC--
----CTCCTCCTTCTTGGCCTCTATACACCACCAAGCCTGTCAGACAGTCCACCTCTTCAAGATATGTGCCCTATGGCGC
CTCAGGATGAAAGGAAGCTGTTCATGAACGGCTACCTCTGCAAGCACCCGAGCACCATTCTGGCTTCCGATTTCAAGACA
TTGCTTCTCAACCATGCCGGGAAACTAGACAACATGGTCCGGTCATCGGCGAACATCGTCACCGCTGCCGAGTTCCCTGG
CCTCAACACCCTTGGCATGTCGATGGCACGCACCGACATCGACTCCTACGGGATAGTGCTTCCCCAC--------TCTCA
CCCAAGGGCGTCGGAGATGATGTTTGTCCATGATGGCAGCGTGCTGGCCGGTTTCTTTGACACCACCGGTAAGCTGTTTC
AGAAGAGATTATGTGAGGGGGATGTTTTCATCTTTCCCCGTGGTCTTGTTCACTTCATCATGAACTATGGTCTCCGTCTT
GCCACGACGTTCTCGGTGCTCAACAGTCAGAACCCTGGTGTGGTTGGAATCACCCACGCGATGTTTGCGCCAGATTCAGA
TGTAGCTGAGG-GGCTGGTGGCAAGAATGATGAAGTTCAGAGAGATGGAAATCTCTGACAACAAGACTACTGATTTTCCA
TGGACTTCCTGATTAGTTATGTAACTAATCAAGATAGTGGATCTAATTATTATGAAATTTACCCGCAGATGATGATTTCC
ACGTTTCAATCTTGTCATGTATTTGGACAGAATCTCAGTCTAGTAATGT-TCTATACTCAATGATGTAAATACCATGTGA
TGTAGCTGATTAATATCTGT--------AGGAAACTAGGAATTATATAAAGATCAGAATCGCG-----------------
----------ACGCATAGATTGGGACCATAGCCTTCTATCTGTTTACCTTACAGGTTGGTTGTTTAGCCTGAA-CCCTGT
CGTGATAATAATA------ATGATCCTGGACGCTATGCATTATCTCTCCATGGTGTTGTTTCTATCTCATTAGTGTCGCA
CATGCACAACCAAGTTTTGGAACCTTATGTAAGCTGTGACATGAGATTTTTGTCAAGCGACAGCAAGCCAGTCTCTTTGG
TTCAGCATCACCAAGGTTGACATCCTCTGGACTGTATGTATCGTAGCCTTGCTTTTCCTTTTGCTTTACTCAGTGGAATT
CTATACCGTTCTTTTAGTATTGTTATC-TTTTGCTCCTTGCAGTTGT--GGTGGTCCCTTTCTTTTCCCTTCCTTCTTTT
GAAAGTGAAGCTTATTTTTT-ATTCTCTCTTCACTGAAAGTTTG------------------------------------
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------------------------------------------------------------------------------AT
TC--ATAGGTATATACCTATGATGCCACTTACAGATTTGTGCAAGGATTATCCTACCAATCAACTAGCTACTCGTGCATA
GGATTCTG----AGCACTCGGCGGCGAGGTGAACAGGTTGAGCTTAGCGAGGTCTGAAGAATAATCCAGAGGGAACGAAT
GGCTACTCGACTGCGCCCTGAATTCAGACCAGTGGCATTGTAAGCAGCACAACTTCTATCTGACTAGATTTGCAAAAATG
-TTGTGAAATCTGATGTCATATACCCTGATAATAGGGAGCATTACATGGTCACAGCAGTAGCAGAGATAGTTCAGTCAGA
CTTGACACCCTCTAGGCATGGT------------------------------------------
>chr3B_678
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---------------------------------------------------------------------AGCACCATATA
CAATGCACGCATTACTGCAGAC--TTGCCAAGTGACCAAGTCTGAAGCATTTTCAGCATCAGCGTGACAATTTATCTAGA
TTTGCAGTGTAGTTTAGCCTGGAGATGAAACAAATGGCT---TGGGGGCATCGTTAGAATCT-GAAAGCTTCATATTAAC
ACCTTCACCCTTTTGCCACAATTCAGAGATTG-------------TTACTTTGGCCACAATCCGAAGCAAGTTCTGTAGT
GAACTCCAAGAAATCTGATACAGGTTGCACAAATTTGGCTTTGGTTGCACTCCTTTCTCATCACTTTATTTAA-------
-----------ATCCATGGTTTTCTACTTCA-TCTCTACGTCCAGGAGATAAAGCTCTTCACTGTCCTGTTTTACTAC--
----GTCCTCCTCCTTGGCCTCTATACACTACCAAGCCTGTCAGACGGTCCACCTCTTCAAAATGTGTGCCCAATGGTGC
CT-AGGGTGAAAGGAAGCTGTTCATGAACGGTTTCCTCTACAAGCACCCTAGCACCATACTAGCTTCTGATTTGAAGACT
TTGCTTCTCAACCATGCC------------------GTCCGGTCATCGGCGAACATCGTCACCGCTGCTGAGTTCCCTGG
CCTCAACACCCTTGGCATGTCGATGGCACGGACCGACATCGATCCCTATGATGTAGTGCTTCCCCAC--------TCTCA
CCCAAGGGCGTCCGAGATGATGTTTGTCCCCAGTGGCAGCGTGCTGGCCGCTTTCTTTGACACCACCGGTAAGCTGTTTC
AGAAGAGATTACGTGAGGGGGATGTTTTCATCTTTCCCCGTGGTCTGGTTCACTTTATCATGAACTATGGTCTCCGTCTT
GCGACGATGTTCTCGGTGCTCAGCAGTCAGAACCCTAGTGTGGTTGGAATCACCCACGCGATGTTTGCGCCAGATTCAGA
TGTAGTTGA-G-GGCTGGTGGCCAGAATGATGAAGTTCAGAGAGATGGAAATTCCTGACAACAAGACTACTGATTTTCGA
TGGACTTCCTGATAAGTTATGTAACGAGTCAAACTAGTGTATCCAATTATTATGAAATTTATCCATAGATGATGATTTTC
ATGTTTCAATCTGGTTATGTATATGGACAAAATTTCAGTCTACTGATGT-TTTATACTCCGTAATGTATATACCATG---
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>chr3D_711
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-----------------------------------CCAAGTCTGAAGCATTTTCAGCATCAGCGTGACAATTTATCTAGA
TTTGCAGCGTAGGGTAGCCTGGAGATGAACCAAATGGCT---TAGGGGCGTCGCTAGAATCG-GAAAGCTTCATATTAAC
ACCTTCACCCTTTTGCCACAGTTCAGAGATTG-------------TTACTTTGGCCACAATCCGAAGCAAGTTCTGTAGC
GAACTCCAAGAAATCTGATACAGGCTGCACAGATTTGGCTTTGGTTGCACTCCTTTCTCATCACTTTATTTAA-------
-----------ACCCATGAATTTTTACTCCCATCTCCGCGTCCAGGAGATGAAGCTCTTCACTGTCCTGTTTTCCTAC--
----GTCCTCCTCCTTGGCCTCTATACACCACCAAGCCTGTCAGACAGTCCACCTCTTCAAGATGTGTGCCCCATGGCGC
CTCGGGGTGGAAGGAAGCTGTTCATGAACGGTTACATCTGCAAGCACCCTAGCACTATACTGGCTTCTGATTTCAAGACA
CTGCTTCTCAACCATGCTGGGAAACTAGACAACATGGTCCGGTCATCTGCGAACATCATCACCGCTGCTGAGTTCCCTGG
CCTCAACACCCTTGGCATGTCGATGGCACGCACCGACATCGACTCCTACGGGATAGTGCTTCCCCAC--------TCTCA
CCCAAGGGCGTCGGAGATGATGTTTGTCCATGATGGCAGCGTGCTGGCCGGTTTCTTTGACACCACCGGTAAGCTGTTTC
AGAAGAGACTGTGTGAGGGGGATGTGTTCATATTTCCCCGTGGTTTGGTTCACTTCATCATGAACTATGGTCTCCGCCTT
GCGACGACGTTCTCGGTGCTCAACAGTCAGAACCCTGGCGTGGTTGGAATCACCCACGCGATGTTTGCGCCAGATTCAGA
TGTAGTTGA-GGGGCTGGTGGCCAGAATGATGAAGTTCAGAGAGATGGAAATCCCTGACAACAAGACTACTGATTTTCCA
TGGACTTACT-------------------------AGTGAAACCAATTATAGTATAATTTATCGACGGATGATGATTTTC
ACATTTCAATCAAGACATGTATATGGGCAGAATTTCATTTTAGTGATGT-TCTATACTCTATACTCTA------------
----GCCGATTAATTTCTGT--------TGGAAT----------TATAAAGAGCAGTATCGCG-----------------
----------ACACACATATTGGGAGCAGAACTTTCTATCTGTTTACCCTACATGTGGCTTGTTTAGCC-----------
--------TAATG------ATAATCCTGGACGCTATGCGTTATCTCTCCGTGGTGTTGTTTCTATCTCAGCAGTGTTGCA
CAAGCACACCCAAGTTTTGCAACCTTATTGCAGCTTTGACAC-AGATTTTCGTCAAGCAGCAGCCAGCCAGTCTCTTTGA
TTTAGCATCACCAAGGTTTGCGTCCTTTGGACTGTATGTATTGTAGCCTTGCTTTTCCTTTTGCTTTACTCAGCGGAACT
CCATGCCATTTTA-TAGTATTGTTATCTTTTTGCTCGTTGCAGTTGATCGGAGGTCCCTTTCTTTTCCCTGCCTTCTTTT
GAATGTGAAGCTTACTTTTT-GTTCTCTCTTTATGGAAAGTTTG------------------------------------
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------------------------------------------------------------------------------AT
TC--GTAGGAATATGCCTATGATGCCACTTACGGATTTGTGCAAGGACTATCCTACCAATCAACTAACTACTCGTGCATA
GGATTCCGAGCTAGCACTCGGCAGAGAGGGAA------------------------------------------------
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----------------------------------------------------------------
>chr3A_712
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------------------------------------CAAGTCTGAAGCATTTTCAGCATCAGCGTGACAGTTTATCTAGA
TTTGCAGCGTAGGGTAGCCTGGAGATGAAACAAATGGCT---TAGGGGCATCGTTAGAATCG-GAAAGCTTCATATTAAC
ACCTTCACCCTTTTGCCACAATTCAGAGATTG-------------TTACTTTGGCCACAATCCGAAGCAAATTCTGTAGT
GAACTCCAAGAAATCTGATACAGGTTGCACAGATTTGGCTTTGGTTGCACTCCTTTCTCATCACTTTATTTAA-------
-----------ACCCATGATTTTCTACTCCCATCTCCGCGTCCAGGAGATGAAGCTCTTCACTGTCCTGTTTTCCTAC--
----GTCCTCCTTCTTGGCCTCTATACACCACCAAGCCTGTCAGATGGTCCACCTCTTCAAGATGTGTGCCCTATGGCAC
CTCAGGGTGAAAGGAAGCTGTTCATGAACGGTTTCCTCTGCAAGCACCCTAGCACCATACTGGCTTCTGATTTCAAGACA
CTGCTTCTCAATCATGCCGGGAAACTAGATAACATTCTCCGGTCATCGGTATACATCGTCACCACCGCAGAGTTCCCTGG
CCTCAACACCCTTGGCATGTCGATGGCACGGACCGACATCGACCCCTATGGGTTAGTGCTTCCCCAC--------TCTCA
CCCAAGGGCGTCCGAGATGATGTTTGTCCATGATGGCAGCGTGCTGGCCGGTTTCTTTGACACAACTGGTAAGCTGTTTC
AGAAGAGACTGTGTGAGGGGGATGTGTTCATCTTTCCCCGTGGTTTGGTTCACTTCATCATGAACTATGGTCTCCGTCTT
GCGACGACGTTCTCAGTGCTCAACAGTCAGAACCCTGGTGTGGTTGGCATCACCCATGCAATGTTTGCGCCAGATTCAGA
TGTAGTCGAGG-GGCTGATGGCCAGAATGATGAAGTCCAGAGAGATGGAAATCCCTAACAACAAGACTACCGATTTTCCA
TGGACTTACT-------------------------AGTGAAACCAATTATAGTATAATTTATCGACGCATGATGATTTTC
ACATTTCAATCAAGTCATGTATATGGGCAGAATTTCAATTTAGTGATGT-TCTATACTCTATACTCTA------------
----GCCGATTAATTTCTGT--------AGGAAT----------TATAAAGAGCAGTATCGCG-----------------
----------ACACACATATTGGGAGCAGAACTTTCTATCTGTTTACCCTACATGTGGCTTGTTTAGCC-----------
--------TAATG------ATAATCCTGGACGCTATGCGTTATCTCTCCATGGTGTTGTTTCTATCTCAGTAGTGTTGCA
CAAGCACACCCAAGTTTTGCAACCTTATTGCAGCTTTGACAC-AGATTTTCGTCAAGCAGCAGCCAGCCAGTCTCTTTGA
TTTAGCATCACCAAGGTTGGCGTCCTTTGGACTGTAAGTATTGTAGCCTTGCTTTTCCTTTTGCTTTACTCAGCGGAACT
CCATGCCATTTTCTGAGTATTGTTCTCTTTTTGCTCCTTGCAGTTGA--GGAGGTCCCTTTCTTTTCCCTCCCTTCTTTT
GAAAGTGAAGCTTACTTTTT-GTTCTCTCTTTATGGAAAGTTTG------------------------------------
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------------------------------------------------------------------------------AT
TC--ATAGGAATATGCCTATGATGCCACTTACCGTTTTGTGCAAGGACTATCCTACCAATCAACTAACTACTCGTGCATA
GGATTCCG----AGCACTCGGCAGCGAGGGAAT-------------------------------------------GAAT
GGTTACTCGACTGCACCTTGAATTCACCCCAGTGGCATGCTAAGCAGCACAACTTCTATTTGACTAGATTTGCAAAAATG
TTTATGAAATTTGATGTCATATACCCTGATAATAGGGAGCACTACATTGTCACAACAGTAGCAGAGATAGTTCAGTCAGA
CTCGGCACCCTCTAGGCATGGT------------------------------------------
>chr3A_805
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-----------------------------------------------------------TCT-GAAAACTTCATATTAAC
AGGTTCACCCTTTTGCCACAATTCAGAGATGTTCTCTGTAAGCGCTTACTTTGGCCCCAATCCAAAGCAAATTCTCAAGT
GAACTCCAAGAAATGTGATACAGGTTACACAGATTTGCCTTTGGCTGCACTCCTTTCTCATCTCATTATTTAGGAGTACT
CCATTATTTAGACCCATGATTTTCTACT-CCATCTCCGTGTCCAAGAGATGAAGCTCTTCAATGTCCTGTTTTCCTACGT
TCTCCTCCTTGTCCTTGTCCTCTATACACCAGCAAGCCTATCAGATAGTCCACCTCTTCAAGATGTGTGCCCTATGGCAC
CTCAGAGTGAAAGGAAGCTGTTCATGAACGGTCTGCAAGAACCCGAT-CGAGCACCATACAGGCTTATGATTTCAAGACA
CTGCTTCTCAACCATGCTGGGAAACTAGACAACATGGTCCGGTCATTGGCGAACATCGTCACTGCTGCTGAGTTCCCTGG
CCTCAATACCCTTGGCATGTCGATAGCATGGACCGACATCAACCCCTACTGGTTAGTGCTTCCCCACTCTCACGGTCTCA
CCCAAGGGCATCCGAGATGATGTTTGTCCACGATGGCAGTGTGCTGGCCGGTTTCTTGGACTCAACAGGTAAGCTGTTTC
AGAAGAGACTCTGTGAGGGGGATGTGTTCATCTTTCCCCGTGGTTTGGTTCACTTCATCATGAACTATGGTCTCCGTCTT
GCGACAACGTTCTCGATGCTCAACAGTCAGAACCCTGGTGTGGTTGGCATCACCCATGCGATGTTTTCATCAGATTTTGA
TGTAGTTGAGG-GGCTGATGGGTAGAATGATGAAGTTCAGAGAGATGGAAATCCCTGGCAACAACACTGCTGATTTTCCA
TGGACTTACT-------------------------AGTGGATCCAATTATTATGAAGTTGATCCATGGAT-ATGATTTTC
ACGTTTCAATTTGGTTATGTATATGGACATGATTTCAGTCTAGTGATGTGTCTATACTCTATGCTGTATATACCATGTGA
TGTAGCTGATTAATTTCTGT--------AGGAAT----------TATAAAGATCAGTATCGCGGCACACAGATTTTTTTG
GAAATTTTTGACACCCAGATTGGGAGCAGAACCTTCTATCTGTTTACCTTACAGGTGGCTTGTTAAGCCTGGACCCTTGT
TGTGATGATAATAGTAACAATAATCCTGGACGCTATGCATTATCTCTCTATGGTGTTGTTTCTTTGTCGTTAGTGTTGCA
CAAGAACAACAAAGTTTTTCAGCCTTATTTCAGCTGTGACATGAGATTTCCGTCAAGCGACAGCCCACCAATCTCTTTGA
TTCGGCATCACCAAGGTTGGCGTCCTTCGTACTGTATGTGTCGTAGCCTTGCTTTTCCTTTTGCTTTACTCACTGGAACT
CCATGCTGTTTTTCTAGTGTTGTTGTC-TTTTGCTCCTTGCAGTTGA--GGAGGTCCCTTTCTTTCCCATGCCTTCT---
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>chrUn_860
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------------------------------------------------CTTTGGCCACAATCCAAAGCAAATTCTGAAGT
GAACTCCAAGAAATCTGATACAGGTTACATGGATTTGGCTTTGGGTGCACTCATTTCTCAGCGCATTATTTAA-------
-----------GCCCGTGTTTTTCTCC-------------------------------------TCCTGTTTTCCTAC--
----GTTCTCTTCCTTGGGCTCTATACACCAGCTAGCCTATCAGACAGTCCACCTCTTCAAGATGTGTGCCCTATGGCAC
CTCAGAGTGAAGGGAACCTATTCATGAATGGTTTCCTCTGCAAACACCCTAGCACCATACTGGCTTCCGATTTCAAGACA
TCGCTTCTCAACCATGCCGGGAAACTAAACAACATGGTCCGGTCATCGACAAATATTATCACGGCTGCCGAGTT------
--------CCCTTGGCATGTCGATGGCACGGACCGACACCGGCCCCTACGGGGTAGTGCTTCCCCAC--------TCTCA
CCCAAGGGCGTCAGAGATGATGTTTGTCCACGGTGGCAACGTGTTGGTCGGTTTCTTCGACACAACTGGTAAGCTGTTTC
AGAAGAGACTATGTGAGGGGGATGTGTTCATCTTTCCCCGTGGTCTGGTTCACTTCATCATGAACTATGGTTTCCATCTT
GCGACAACGTTCTCCGTGCTCAGCAGTCAGAACCCTGGTGTGGCTGGCATCACCCATGCAATGTTTGCGCCAGATTCAGA
TGTAGTTGAGG-AGCTGATGGCCAGAATGATGAAGTTCGGAGAGATGGAAATCCCTGACAACAAGACTACTGATTTTCCA
TGGACTTGCTGACTA-----------------------------------------------------------------
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>chr3B_1014
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-------------------------------------------------------------CTGTCCTGTTTTACTAC--
----GTCCTCCTCCTTGGCCTCTATACACTACCAAGCCTGTCAGACGGTCCACCTCTTCAAAATGTGTGCCCAATGGTGC
CT-AGGGTGAAAGGAAGCTGTTCATGAACGGTTTCCTCTACAAGCACCCTAGCACCATACTAGCTTCTGATTTGAAGACT
TTGCTTCTCAACCATGCC------------------GTCCGGTCATCGGCGAACATCGTCACCGCTGCTGAGTTCCCTGG
CCTCAACACCCTTGGCATGTCGATGGCACGGACCGACATCGATCCCTATGATGTAGTGCTTCCCCAC--------TCTCA
CCCAAGGGCGTCCGAGATGATGTTTTTCCCTAGTGGCAGCGTGCTGGCCACTTTCTTTGACACCACTGGTAAGCTGTTTC
AGAAGAGATTATGTGAGGGGGATGTTTTCATCTTTCCCCGTGGTCTAGTTCACTTTATCATGAACTATGGTGTCCGTCTT
GCGACGATGTTCTCGGTGCTCAGCAGTCATAACCCTAGTGTGGTTGGAATCACCCACGCGATGTTTGCGCCAGATTCAGA
TGTAGTTGA--GGGCTGGTGGCCCGAATGATAAAGTTCAGAGAGATGGAAATTCCTGACAACAAGACTACTGATTTTTGA
TGGACTTCCTGATAAGTTATGTAAGGAGTCAAACTAGTGTATCCAATTATTATGAAATTTATCCATAGATGATGATTTTC
ATGTTTCAATCTGGTTATGTATATGGACAAAATTTCAGTCTACTGATGT-TTTATACTC---------------------
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>SNPs
SSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S----S------S------
S--------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
------S-------------------------------S--------S------------S------S------S--S--
SSSSSSSSSSSSSSSSSSSSSSSS--------------S------------------------S----------------
-----S-SS-------------------------S---S-------------------SS----S----------S---S
---------S--S------S---------------------------------------SSSSSSSSSSSSSSSSSSSS-
----------------------------S-------------------S-SS----------------------------
-------------SS----S------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
-------------------------------S--------------S------------S--------------------
----------------SS------------------------S------------------------------S------
-------------------S----------------S-----------------S-------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------S-
---------------------------------------------------S-S--------------------------
--------------------SSSSSSSS-------------------------S----S---------------------
----------S---------------------------------------------------------------------
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------------------------------------S----S--------------------------------------
--------------------S-----------------------------------------------------------
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---------------------------------S----------------------------------------------
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-----S---------------------------------------------------------S----------------
------S--------S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_660
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TGTTGCCGATTCTCCAGCTT------------------------------------------------------------
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>reverse_2597
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------------------------------------TTTGCTGTTGAGGAGGTCCC------------------------
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----------------------------------------------------------------
