>input_sequence_72248
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-----------------------------------------------------------ATGGCTGAGCAAGAAGGAGAA
GAATACAAGGTGCTCATCGATCAGACCAGCAAAGACGCCGGTGAACCGCACCAAGACGCCGACGATGACGACGCTGACGA
CACCTCGAGCTTCATCCTGGTCATGAACCTCGTCCTGAGCGGCACGGCCCGGCTCAACGTGCTCCTCCCGACGGCCACCA
TCCTGACCTTCGCCATCTTCGCGCCGCTGGTCACCGACGACGGCAAGTGCGCGCGCGTCAACCGCGTGCTCACCGGCGCG
TTCGTGCTGCTCTGCGCCGCCTCCTGCGTCTTCTTCACGCTCACCGACAGCTTCCGCTCCGCCACGGGCCGGCTCCGCTA
CGGCGTGGCCACCCCGACGGGTATCGCGACGTTCTGCGCCGGCGGGGGGAGCCGGAGGAAGGCGCCGAGGGAGCCGGAGA
GGTACAGGCTGCGGTGGTCGGACCTGTTCCACACCGCGCTCTCCCTGGTGGCCTTCGTGACCTTCGCCGCCTCCCACCAC
GACATCGTCCGGTGCTACTACCCCGGCGCGCCCAGGAAGGTGGTGAACACCGTGCCCCTCGTCGTCGGCTTCGTCGTCAG
CCTCCTGTTCGTCATGTTCCCTTCCAAGAGGAGGGGGATCGGCTACCCCTTCCTGCTCAGGACCGACCTCGTGTACCTGC
GTCGCTGA------------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G407300
GTCTAGTCTGTAAATTATCTAATGTATGTTTATAGTCAACAAATGTTTCTGTTAAACTTGATAAACCGT-CGGTTTTATC
GTATAGAGTTAGTGACAATGCTCACAGATATTGT--ACTACTAATACTACTTGCTTGCAGGACTGGGATCGTCAAAATCC
AACTCAAATTGTGACAGAGATGTGTGGTTTTGTGACAATCCTTTCTGGGACATTTCTTCTTCATAAGACTAAAGATATGG
TTGATGGTATGGTTCCACTCCTCCCTTCTTCTGGTTTGCACATGGTAAC---TATAT----TTGGTAACTTCTAACTTTC
TGGCATTATAGGTCTCCCACCGACTCTGCCTATCAGGATTCCGAAACATGGTGATGAAAACGGCTATGCGTCTGAAGGAA
TTCCTCTTAGATCCGCTGCTGAAGGCCTCCCTCTGAGGTCACCAAGGGCAGCAGAATAATTTTGACCAACTTGAGATGCT
CAGTGATCCTTATGGCCATGGTCCGCATTCTTTCATTCTATCCAGTCTGTAGATTGTACTTTAGGGCTCTATAAACAGGA
AAAGGCTCGTTCCCCCTTGTAGTTTTCGAGGAACCGGTAGAGTGTCAGGGGATATATGTCTTATACATCAAAAGTTTTC-
---CATGTATT-TTTGTTTTTGAGGAACCGGTATGGTATAGTATTGGGGATGCATCTTGTACCGGCTATCATCTGTAACT
GTTGTATTCTTTGAAAATAGGGAAAGAATCTGAAGAACTCAAAAAATCATTCCCTCTTTCACTTCAGTTGAATCTTCGCA
CCATTTTCTCATTGGTGGTGATGTTCTTTGCTTGTGTA--ATAGCAATGTTCCGTTTGCCTCGCTGCACTTGCGAAAGCA
ATCCTTTCTTCCATGTCCAAAGCCAGGCAGATTCTTTTCAGCGCTTGCTCATTTCAGCTCTCTCCTTTAACTAACCCCGT
AACCTTCTCGTCTCATCAAACCCAACAATCTCAAAC--CCGCTTGCACACGCACCGGCAATGGCTGAGCAAGAAGGAGAA
GAATACAAGGTGCTCATCGATCAGACCAGCAAAGACGCCGGTGAACCGCACCAAGACGCCGACGATGACGACGCTGACGA
CACCTCGAGCTTCATCCTGGTCATGAACCTCGTCCTGAGCGGCACGGCCCGGCTCAACGTGCTCCTCCCGACGGCCACCA
TCCTGACCTTCGCCATCTTCGCGCCGCTGGTCACCGACGACGGCAAGTGCGCGCGCGTCAACCGCGTGCTCACCGGCGCG
TTCGTGCTGCTCTGCGCCGCCTCCTGCGTCTTCTTCACGCTCACCGACAGCTTCCGCTCCGCCACGGGCCGGCTCCGCTA
CGGCGTGGCCACCCCGACGGGTATCGCGACGTTCTGCGCCGGCGGGGGGAGCCGGAGGAAGGCGCCGAGGGAGCCGGAGA
GGTACAGGCTGCGGTGGTCGGACCTGTTCCACACCGCGCTCTCCCTGGTGGCCTTCGTGACCTTCGCCGCCTCCCACCAC
GACATCGTCCGGTGCTACTACCCCGGCGCGCCCAGGAAGGTGGTGAACACCGTGCCCCTCGTCGTCGGCTTCGTCGTCAG
CCTCCTGTTCGTCATGTTCCCTTCCAAGAGGAGGGGGATCGGCTACCCCTTCCTGCTCAGGACCGACCTCGTGTACCTGC
GTCGCTGAACATTTTGGCCGTGCCGTGCCGTGCCGTGCTGTGCATGTGCAGTGGACCTGAATCCAGAAGCTGAGGCCTCT
GA--------CTGTATCGGA-ACGCGTGTGAGC-TTGCATATATGATTTGATTTGTTGGATC--TGTATATTTGAAAGGC
TTTACACGATTGATGATTCTCTTGTGAAACTGAGCA-----------------AAATGTAGACTTATGTACATCCTTTCT
CGTGCTCCTC-AGTACAAAGCTGAAAACAGAGCGTAAGGCGAGAGATTGAACGAGGTAGCTGCCGGAGGGTGGCTCCTCA
TTCCTCGGCGTCCGGATCAGGCTCGAGGCCCGATATTTGCTTCAGCGGTTTCCAGATGAATTTTCTCCTGCATCAATCAA
ATCGGCTCGAAAGTTATTCACAGATTCTGG---------------------TAAA---------TTCAGTGAGAGTTCAG
GTGGAGATTGA----CGTACCAGTTGCCGCATTCCGCGATCACCCTGACTTTGGGGCGGAGGTCGGGGAGCATGGCCAGG
AACTGCAGCTCGGCCTTGGACAGAACCTGCAGACGGAACGAACACGCGAC----AACGATGAGAAATAGCAGAGCCGATG
AGCAACGTGTGAGAGTGGCGAGAGAATGGGGGAGACCTTGGCCTCGTAGACCCAGACGATGAGCCCTTTGGCGTCCGGGT
GCAGCAGGCTGAGCCTGTAGTCCACCTCCGGCGGGAAGTACCACCTCGCCACCGGCTGCCTCCCGAGGCTAGGCTGCAGC
AGCAAAGCAAGCAGCGCCCCCCAGTCAGCTAAGCTA-AGCAGAGCAGACGACATTAATGGCGGCGAAAGGGAAATGCATC
ATCGTCGGCTCTGCTGACGGACCGGGCAGACGGGGTGGATCTTGGTGAGGGTGGACTCGGGGTCGCCGAGGCCGCGCGCG
GAGAGGTCGAGGAAGTAGTAGCCCTGGTAGCGGAGGCGGTTGAGGTAGCGGCCCTCGTAGCCGCCCTCGTGCGGCGGGTA
GATGGCCAGCGCCTTGTGCTCCTCCACGTCGTCCAGC
>chr3B_1
GTCTAGTCTGTAAATTATCTAACATATGTTTGTATTCAACAAATGTTTCTGCTAAACTTGATAAG-CTGCCGGTCTTGTC
GTATACAGTTAGCGATAATGCTCAT-GATATTATAGCCTACTAATAGTACTTGCTTGCAGGACTGGGATCGTCAAAATCC
AACTCAAATTGTGACAGAGATGTGTGGTTTTGTCACAATCCTTTCTGGAACATTTCTTCTTCATAAGACTAAAGATATGG
TTGATGGTATGGTTCCACTCCTCCCTTCTTCTGGTTTGCACATAGTAACTAGTAGAGTATATTGGTAACTTCTAACTTTC
TGGCATTATAGGTCTCCCACCGACTCTGCCTATCAGGATTCCGAAACATGGTGATGAAAACGGCTATGCGTCTGAAGGAA
TTCCTCTTAGATCCGCTGCTGAAGGGCTCCCTCTGAGGTCACCAAGGGCAGCAGAATAATTTTGACCAACTTGAGATGCT
CAGTGATCCTTGTGGCCATGGTTCGCATTCTTTCATTCTATCCAGTCTGTAGATTGTACTTTAGGGCTCTATAAACAGGA
AAGGGCTCGTTCCCCCTTGTAGTTTTCGAGGAACCGGTAGAGTATT-GGGGATATATGTCTTATACATCAAAAGTTTTT-
---CATGTATTTTTTGTTTTTGAGGAACCGGTATGGTATAGTATTGGGGATGCATCTTATACCGGCTATCATCTGTAACT
GTTGTATTTTTTGAAAATAGGGAAAGAATCTGAAGAACTCAAAAA-CCATTGCCTCTTTCACCCCTGTTGAATCTGCACA
TTATTTTCTCATAGGTGGTGATGTTCTTTGCTTGTGCATGATGGCAATGCTCCGTTTGCCTCGCTGCACTTGCGAAAGCA
ATCCTTTCTTCCA-GTCCAAAGCCAGGCAGATTCTTTTCAGCGCTTGCTCATTTCAGCTCTCCCCTTTAACTAACCCTGT
AACCTTGTCGTCTCATCAAACCCAACAATCTCACAC--CCGCTTGCACACGCACCATCAATGGCTGAGCATGAAGGAGAA
GAGTACAAGGTGCTGATTGATCAGACCAGCAAAGACGCCGGTGAACCACACCAAGACGCAGACGATGGTGACGCTGACGA
CACCTCGAGCTTCATCCTGGTCATGAACCTCGTCCTCAGCGGCACGGCCCGGCTCAACGTGCTCCTCCCGACGGCCACCA
TCCTGACCTTCGCCATCTTCGCGCCGCTGGTGACCGACGACGGCAAGTGCGCGCGCGTCAACCGCGTGCTCACCGGCGCG
TTCGTGCTGCTCTGCGCCGCCTCCTGCGTCTTCTTCACGCTCACCGACAGCTTCCGCTCCGCCACGGGCCGGCTCCGCTA
CGGCGTGGCCACCCCGACGGGTATCGCCACGTTCTGCGCCGGCGGGGGGAGCCGGAGGAAGGCGCCGAGGGAGCCGGAGA
GGTACAGGCTGCGGTGGTCGGACCTGTTCCACACCGCGCTCTCGTTGGTGGCATTTGTGACCTTCGCCGCCTCCCACCAC
GACATCGTCCGGTGCTACTACCCCGGCGCGCCCAGGAAGGTGGTGAACACCGTGCCCCTCGTCGTCGGCTTCGTCGTCAG
CCTCCTCTTCGTCATGTTCCCTTCCAAGAGGAGGGGGATCGGCTACCCGTTCCTTCTCAGGACCGACCTCGTGTACCTAC
GGCGCTGAACATTTTGGCGACC----------------------TATGCAGTGGACCTGAACCCTGAAGTCGAGACCTCC
CT----------------GAGACGCATGTGAGC-TTGCATATATGATTTAATTTGTTGGATATGTGTATGTTTGAAAGAT
GTTACGCGATTGAGGATTCTCTTGTGGAATTAACCGAGTCCAGCTCAGATGTCAAATGTATACGTATGTACATCATTGTC
CTCTTTAGTACA----AAAGCTGAAAACAGAGTGTAAGGCGAGAGATGAGACGAGGAAGCTGCCGGACGGTGGCTCCTCA
TTCCTCGGCGTCCGGATCAGGCTCGAGGCCCGATATTTGCTTCAGCGGTTTCCAGATGAATTTTCTCCTGCATCAATCAA
ATCGGCTCGAACGTTATTCACAGGTTCTGG---------------------TGTACGTACGTATTTGGGTGAGATTTCAG
GTGGTGGCTGATGTGCGTACCAGTTGCCGCATTCCGCGATGACCCTGACTTTGGGGCGGAGGTCAGGGAGCATGGCCAGG
AACTGCAGCTCGGCCTTGGACAGAACCTGCAGACGAAACGAACAAGCCAA----AACGGTGAGAAACAGCAGAGCCGATG
GGCAACGTTGGAGAGTGGCGAGAGAATGGGAGAGACCTTGGCTTCGTAGACCCAGACGATGAGCCCTTTGGCGTCAGGGT
GCAGCAGGCTGAGCCTGTAGTCCACCTCCGGCGGGAAGTACCACCTCGCCACCGGCTGCCTCCCGAGGCTAGGCTGCAGC
AGCAAAGCAAGCAGCGCACCATAGTCAGCTAAGCTA-AGCAGAGCAGACGGCATTAATGGCGGCGAAAGGGAAATGCATC
ATCGTCGGTTCTGCTGACGGACCGGGCAGACGGGGTGGATCTTGGTGAGGGTGGACTCGGGGTCGCCGAGGCCGCGCGCC
GAGAGGTCGAGGAAGTAGTAGCCCTGGTAGCGGAGGCGGTTGAGGTAGCGGCCCTCGTAGCCGCCCTCGTGCGGCGGGTA
GATGGCCAGCGCCTTGTGCTCCTCCACGTCGTCCAGC
>chr3D_1
GTCTAGTCTGTAAATTATCTAACATATGTTTGTTGTCAACAAATGGTTCTGTTAAACTTGATAAAACTGCCAGTTTTGTT
GTATAGAGTTAGTGACAATGCTCACAGATATTATAGACTCCTGATAGTACTTGCTTGCAGGACTGGGATCGTCAAAATCC
AACTCAAATTGTGACAGAGATGTGTGGTTTTGTGACCATCCTTTCTGGGACATTTCTTCTTCATAAGACTAAAGATATGG
TTGATGGTATGGTTCCACTCCTCC---CTTCTGGTTTGCACATAGTAACTAGTATAT----TTGGTAACTTCTAACTTTC
TGGCATTATAGGCCTCCCACCGACTCTGCCTATCAGGATTCCGAAACATGGTGATGAAAACGGCTACGCGTCTGAAGGAA
TTCCTCTTAGATCCGCTGCTGAAGGCCTCCCTCTGAGGTCACCGAGGGCAGCAGAATAATTTTGACCAACTTGAGATGCT
CAGTGATCCTTGTGGCCATGGTTCGCATTCTTTCATTCTATCCAGTCTGTAGATTGTACTTTAGGGCTCTATAAACAGGA
AAAGGCTCGTTCCCCCTTGTAGTTTTCGAGGAACCGGTAGAGTATT-GGGGATATATGTCTTATACATCAAAAGTTTTTT
TTCCATGTATTTTTGTTTTT-GAGGAACCGGTATGGTATAGTATTGGGGATGCATCTTATA-----------CTGTAACT
GTTGTATTATTTGAAAATGGGGAAAGAATCTGAAGAACTAAAAAA-TCATTCCCTCTTTCACTTCTGTTGAATCTGCGCA
CTATTTTCTCATTGGCGGTGATGTTCTTTGCGTGTGTA--ATGGCAATGCTCCGTTTGCCTCGCTGCACTTGCGAAAGCA
ATCCTTTCTTCCATGTCCAAAGCCAGGCAGATTCTTTTCAGC--TTGCTCATTTCAGCTCTCTCCTTTAACTAACCCCGT
AACCTTCTCGTGTCATCAAACCCAACAATCTCACACACCCGCCTGCACACGCACTACCAATGGCTGAGCAAGGAGGAGAA
GAATACAAGGTGCTCATCGATCAGACCGGCAAAGACGCCGGTGAACCGCACCAAGACGCCGACGATGACGACGCCGACGA
CACCTCGAGCTTCATCCTGGTCATGAACCTCGTCCTGAGCGGCACGGCCCGGCTCAACGTGCTCCTCCCGACGGCCACCA
TCCTGACCTTCGCCATCTTCGCGCCGCTGGTCACCGACGACGGCAAGTGCGCGCGCGTCAACCGCGTGCTCACCGGCGCG
TTCGTGCTGCTCTGCGCCGCCTCCTGCGTCTTCTTCACGCTCACCGACAGCTTCCGCTCCGCCACGGGCCGGCTCCGCTA
CGGCGTGGCCACCCCGGCGGGCATCGCGACGTTCTGCGCCGGCGGGGGGAGCCGGAGGAAGGCGCCGAGGGAGCCGGAGA
GGTACAGGCTGCGGTGGTCGGACCTGTTCCACACCGCGCTGTCCCTGGTGGCCTTCGTGACCTTCGCCGCCTCCCACCAC
GACATCGTCCGGTGCTACTACCCCGGCGCGCCCAGGAAGGTGGTGAACACCGTGCCCCTCGTCGTCGGCTTCGTCGTCAG
CCTCCTCTTCGTCATGTTCCCTTCCAAGAGGAGGGGGATCGGCTACCCGTTCCTGCTCCGGACCGACCTCGTGTACCTAC
GGCGCTGAACATTTTGGCGACC----------------------TGTGTAGTGGACCTGAACCCTGAGGTCGAGGCCTCT
CTGACTCTGTCTGTATCGGAGCCGCATGTAAGCTTTGCATATATGATTTGATTTGTTGGAGATGTGTATGTTTGAAAGGT
GTTACACGATTGATGGTTCTCTTGTGGAATTAACCGAGCC-----CAGATGTCAAATGTATACGTATGTACATACATCAT
TGTCCTGCTTTAGTACAAAGCTGAAAACGGAGTGTAAGGCGAGAGATGAGACGAGGCAGCCGCCGGACGGTGGCTCCTCA
TTCCTCGGCGTCCGGATCAGGCTCAAGGCCCGATATCTGCTTCAGCGGTTTCCAGATGAATTTTCTCCTGCATCAATCAA
TCCGGCTCGAAAGTCATTCACAAGAGAGAACACTCGTCTGTCATGGTTTGTTAAA---------TTCAGTGAGAGTTCAG
GTGGAGATTGA----TGTACCAGTTGCCGCATTCCGCGATGACCCTGACTTTGGGGCGGAGGTCAGGGAGCATGGCCAGG
AACTGCAGCTCGGCCTTGGACAGAACCTGCAAACGAAACGAACACACGACAGACAACGATGAGAAACAGCGGAGCCGATG
AGTAACGTGTGAGAGCGGCGAGAGCCTGAGAGAGACCTTAGCCTCGTAGACCCAGACGATGAGCCCTTTGGCGTCCGGGT
GCAGCAGGCTGAGCCTGTAGTCCACCTCCGGCGGGAAGTACCACCTCGCCACCGGCTGCCTCCCGAGGCTAGGCTGCAGC
AGCAG-----GCACCGCACCCAAGTCAGTTGTTAAGTAGCAGAGCAGACGACATTCATGGCGGTGAAACGGAGAGGAACG
GCGATCGGTTGTGCTGACGGACCGGGCAGACGGGGTGGATCTTGGTGAGGGTGGACTCGGGGTCGCCGAGGCCGCGCGCG
GAGAGGTCGAGGAAGTAGTAGCCCTGGTAGCGGAGGCGGTTGAGGTAGCGGCCCTCGTAGCCGCCCTCGTGCGGCGGGTA
GATGGCCAGCGCCTTGTGCTCCTCCACGTCGGCCAGC
>SNPs
----------------------SS-------S---------------------------------S-SS--------S--
--------------------------------S-------------S---------------------------------
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-------------------------------------------S------------------------------------
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-----------S----------S---------------------------------------------------------
-------------------------------------------S-SS-------------------------------S-
----------------------------------------------------------S---------------------
--------S------------------------------------S-------------------S---------S----
-S----------------------------------------S------S------------------------------
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---------------------------------S---------------------SS-----------------------
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------S-----------------------------------------S-----------------------------S-
-S----------------SSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S--S----SS---------
SS-----------------------S-----------------------------------S-------S---------S
S-------------------------S--S-S-S-S------------------------S--S-------------SS-
---S--S--S----------------------S--------------SSS------S----------S------------
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-----------------------S--------------------------------------------------------
----------------------------------------S-----------------------S---------------
-----------------------------------S------------------------------S-------------
------------------------------S-------------------------------------------------
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-----------------S---S----------------------------------------------------------
--------S-----------------------------------------------------------------------
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>forward_606
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--------------------------CGAGGAACCGGTAGAGTGTC----------------------------------
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>reverse_2307
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------------------------------------------------------------------TAGCAGAGCCGATG
AGCAAC--------------------------------------------------------------------------
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