>input_sequence_72247
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----------------------ATGATACTGGTAAGCGGGACGCCCAAACGGGCCACAGCTCCGAAGGCAGATAGATCAG
TACTTGTAGTCCTTGACGTGGAGGCTCTCAGAGGCGCCCTCGCCAAGGGTGGCGTCGCCCTTGTAGGTGCCAAGGGTGGC
CTCGGAGTTGGCCTTGCACCTCACCAGGAACGCCGTCCTGGCCTTCTCCTCGTTCTCCGTCTTGCCGGACCAGGCCTTGA
GGGTGCTCTGCTGGAGGGCACGCCCGAAGGAGAAGGACAGGTTCCAGGGCTTCTTGGTCTGGAGCTTGTTCATGGCGTTC
AGGTTCAGGGTCGCCTCCTCCTCACTCTGTCCACCGGAGAGGAAGACAATGGCGGGGACGGCAGCAGGGACGGTCCTCTG
GAGGGTGCGGACGGTGTACTCAGCAATCACCTCAGGGGCCACCTTCTTGGCGTCGGATCCAGGGGTGACCATGTTGGGCT
TCAGGAGGGTGCCCTCAAGGAGGACATGCTGGTCGTTGAGGGCCTTGTAGCAGGCAGCAAGGACGATCTCAGTCACGTAA
GCACAGCGGTCAATGTCATGAGGTCCATCAACAAGGATCTCAGGCTCAACAATGGGCACCAGCCCATTCTCCTGGCAGAT
GATGGCATAGCGAGCCAGACCCTGAGCGTTCTGGTCGATGGAGAGCTGTGA-----------------------------
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>chr3A_1_TraesCS3A01G391200
TACTTTCCAAATTTCAGCAGCTGGTGTCTGAAGGTCGCGTATGTTTCTTTCAGATTAGCCCCGCCAAAAGTCAGGTTCGG
TTCATGTACCATAGATTCGAATTCCATTTACTTGATGGCACTGTCAAACCTATAGATCCTGTGCCTAGCTGTGTCGATAC
CGCCTTCAAAAGTACAAAGTTGAGTCATTTATTTGGG-------------------------------------------
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-----------------------------------------------------------------------ACGGAGGGA
GTACATGACATCAAAGGAAGGAAGTGGCAGTATTTTTGCCTTCATTATCAACGAGGTCAATGCTAGGAGAAGCTTTGTTT
AGTAGCTGCATCGTAATCTTTGAAACTCGTGCATCAAATCATGAAGCCCACAATCTTCCAGATTCTCTTTCGCTCGAAAT
AAAGTTGCACGTAGTAAAAAAGAAATCGGCATCTAGTATCATCACAGCAATGAAACAAAGCAAGCAACAGCAATCAAAGC
ACCTCATCAGCGGGTGCCGGGGCTGCAAGGAGAAACAAGAAGCTAGGTCCGGTGCAGGTGGTGGTAACAAGCTACTTGTA
GTACTTTTCTTGTCAGGTTGAGAAGGAAACCTGAGGCACCAAAATTTCTGCTATTTTGGAAGGCAATGCTGTGGCCACTT
TGTGACAAGACCACAGGGCCAAACAGATCATGGTGAGACATTTCCTAGTACATCTTCAGAAATCCCTAAGAAAACGCAGC
ACCATCTCGTTTAAAAAACTCAAACGCGTTTCATGAATGAAACTTATCGATAGCCATTTGACAGCTTA---------GAA
CAAAGCAAG-AAAAGGTGACGGAACACATGTGTACTCGCATATG---AGGTTTGAA-CATTGTATGAGCAGGAAAATTAC
AGGACCATGG---AACAAAAACCT--GCTCCAATATACGATACGCAGCACCCGATTTCCAGGGTACTTCAACTCCAAAAA
GAAACTA--CTACGGTATTATGAAAACACAAGTTCCATATTATTAAAAACGATGTTCGATATCC-AAGGATATATCAGGA
CTCAGAAAACCAA------ACAATGATACTGGTAAGCGGGACGCCCAAACGGGCCACAGCTCCGAAGGCAGATAGATCAG
TACTTGTAGTCCTTGACGTGGAGGCTCTCAGAGGCGCCCTCGCCAAGGGTGGCGTCGCCCTTGTAGGTGCCAAGGGTGGC
CTCGGAGTTGGCCTTGCACCTCACCAGGAACGCCGTCCTGGCCTTCTCCTCGTTCTCCGTCTTGCCGGACCAGGCCTTGA
GGGTGCTCTGCTGGAGGGCACGCCCGAAGGAGAAGGACAGGTTCCAGGGCTTCTTGGTCTGGAGCTTGTTCATGGCGTTC
AGGTTCAGGGTCGCCTCCTCCTCACTCTGTCCACCGGAGAGGAAGACAATGGCGGGGACGGCAGCAGGGACGGTCCTCTG
GAGGGTGCGGACGGTGTACTCAGCAATCACCTCAGGGGCCACCTTCTTGGCGTCGGATCCAGGGGTGACCATGTTGGGCT
TCAGGAGGGTGCCCTCAAGGAGGACATGCTGGTCGTTGAGGGCCTTGTAGCAGGCAGCAAGGACGATCTCAGTCACGTAA
GCACAGCGGTCAATGTCATGAGGTCCATCAACAAGGATCTCAGGCTCAACAATGGGCACCAGCCCATTCTCCTGGCAGAT
GATGGCATAGCGAGCCAGACCCTGAGCGTTCTGGTCGATGGAGAGCTGTGATGGCTCGGTGGCGCCGATCTTAAGGACTG
CACGCCACTTGGCGAAGCGGGCACCAGCCTCATAGTACTTGGCGCAGCGCTTGC-----CAAGGTCATCAAAGCCCTGGG
TGGTGGTCTCACCGTTGGTTCCAGCAAGCTCGATGGTACCCTTGTCCACCTTGATTCCGGGGAGGACATTGCCCGCCTTG
AGGATGTCGACGAAGGGCTTGCCACCCTTGGTGCTCTGGTACAGGGTCTCCTCGAAGAGGATCACACCGCTGAGGTACTG
GAGGGCACCAGGGGTGCAGAAGAGGAGCTCACGGAGGGCACGGCGGTTGTCCTCAACGTTCTCAACATTGATGCTGGCGA
AGCGCTTGCCGATGGTGCCGGTGGACTCATCAGCAGCGAGGATACCCTTGCCAGGGGTGCCAATGTAGGCAGCGTTCTTG
ATGAGCTCATCTGCAAGATAAATCA----ACCAACAGTATT-ACAATCAATTGACATAACTGTACAGATATTACAAATTG
TGATCAATTGCCATAACTGTACATATATTATAAATTGTGATCAAAT------CTACAGAACTGCAGGTTGAGTGCAACCA
CTCACAACGTTTGGCAAGCATAACAGCAAATGCAGATCAAATTTACTAACATAATTCTGACAATTGACTACGAAATTTCG
T----------------------------------------CAATATTTTTTCTAAA-----------------------
-----------------------------------AAATTGCACGTGCACAACAGGAAGGTGGTA-AA-------CATAA
GGGCAGGGGATACCAATAATTAAGATCACAGGAGAGAAAAACATACAACT-----CTA--TGTAAGGACGGCATATTCCT
TGGCAAAAGATGATCCTATGACATATACAGATCTAGATTCACAGATGCAATCTACAATAACTAAAG--------------
-------ACGAACCCAACAGAAACATGTGTAGATGCGTATACAAACTTAACCACAGAGTAA---AAAAGGAAGGAACGCC
AGTATCATCATTCGCACAAAATAA-TCACTAGCATGCACC-TAGCAGCAGCAGCAACTTGCACAATTATCAGCATGCAAC
CCATCA
>chr3D_1
TACTTTCCAAATTTCAGCAGCTGGTGTCTGAAGGTCGTGTATGTTTCTTTCAGATTAGCCCCGCCAAAAGGCAGGTCC--
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----------------------------------------------------------GGTTCATGTACCATATATTTGA
ATTGCGTTTATTACTTCA-TGGCACTGTGAAACCTGTAGATGCTGTGCCCGAGTGTTTTCCTCAGGTTTGAGAT---CTT
TCAGGTCAAGATTCAACTGGTCGATGGATTTGCTGGACGAGGACGACGATTGGAGTCTGCTGCTGTGACGATACCGCCTT
CAAATCTGTAGTACTTCCTCCGTTCCTAAATAAATAGAAGTGGAATGTCTAGACTTATA-----TTTAGGAACCGAGGGA
GT---TGACATC-AAGGAAGGAAGTGGCAGTA------------------------------------------------
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--------------------------------------GAAACTTATCGATAGCCATTTGACAGCTTAAACCACGAGGAA
CAAAGCAAGAAAAAAGTGCCGGAACACATGTGTACTCAGCATATGACAGGTTTTAA-CATTGTATGAGCAGGTAAATTAC
AGGACCATGG---AACAAAAACCT--GCTCCAATATACGATACGCAGCACCCGATTTCCAGGGTACTTCAACTCCAAAAA
GAAACTA--CTACGATATCATGAAAACACAAGTTCCATATTATTAAAAACGATGTTCGATATCC-GAGGATATATCAGGA
CTCAGAAAACCAA------ACAATGATACTGGTAAGCGGGACGCCCAAACGGGCCACAGCTCCGAAGGCAGATAGATCAG
TACTTGTAGTCCTTGACGTGGAGGCTCTCAGAGGCGCCCTCAGCGAGGGTGGCGTCACCCTTGTAGGTGCCGAGGGTGGC
CTCGGAATTGGCCTTGCACCTCACCAGGAACGCCGCCCTGGCCTTCTCCTCGTTCTCCGTCTTGCCGGACCAGGCCTTGA
GGGTGCTCTGCTGGAGGGCACGCCCAAAGGAGAAGGACAGGTTCCATGGCTTCTTGGTCTGGAGCTTGTTCATGGCGTTC
AGGTTCAGGGTCGCCTCCTCCTCACTCTGTCCACCAGAGAGGAAGACAATGGCGGGGACGGCAGCAGGGACGGTCCTCTG
GAGGGTGCGGACAGTGTACTCAGCAATCACCTCAGGGGCCACCTTCTTGGAGTCGGAACCAGGGGTGACCATGTTGGGCT
TCAGGAGGGTGCCCTCGAGGAGGACATGCTGGTCGTTGAGGGCCTTGTAGCAGGCAGCAAGGACGACCTCGGTGACATAA
GCACAGCGGTCAATGTCATGAGGTCCATCAACAAGGATCTCGGGCTCGACAATGGGCACCAGACCATTCTCCTGGCAGAT
GATGGCATAGCGAGCCAGACCCTGAGCGTTCTGGTCGATGGAGAGCTGCGATGGCTCGGTGGCGCCGATCTTGAGGACTG
CACGCCACTTGGCGAAGCGGGCACCAGCCTCGTAGTACTTGGCGCAGCGCTTGC-----CAAGGTCATCAAAGCCCTGGG
TGGTGGTCTCACCGTTGGTTCCAGCGAGCTCAATGGTACCCTTGTCCACCTTGATGCCGGGGAGGACATTGCCCGCCTTG
AGGATGTCGACAAAGGGCTTGCCACCCTTGGTGCTCTGGTACAGAGTCTCCTCAAAGAGGATCACACCGCTGAGGTACTG
GAGGGCACCAGGGGTGCAGAAGAGGAGCTCACGGAGGGCACGACGGTTGTCCTCAACGTTCTCAACATTGATGCTGGCGA
AGCGCTTGCCGATGGTGCCTGTGGACTCATCAGCAGCGAGGATACCCTTGCCAGGGGTGCCAATGTAGGCAGCGTTCTGG
ATGAGCTCATCTGCAGGATAA-CAGCATCAGCATCAGTATT-ACAATGAATTGCCATAAC--------------------
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>chr3B_1
TACTTTCCAAATTTCAGCAGCTGGTGTCTGAAGGTCATGTATGTCTCTTTTAGATTAGCCCTGCCAAAAGGCAGGTCC--
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----------------------------------------------------------GGTTCATGTACCATAGATTTGA
ATTGCGTTTATTACTTCA-TGGCACTGTCAAACCTGTAGATGTTGTGCCCGAGTGTTTTCCTCTGTAATTTACAGGCCTT
TCAGGTCAAGATTCAACTGATCGATGGATTTGCTGGATGAGGACGTCGATTGGAATCTGCTGCTGTGTCGATACCGCCTT
CAAATCTGTTCC------------------TAAATATAAGTGGAATTTCTAGACTTATA-----TTTAGGAACGGAGAA-
----------------GAAGGAAGTGGCAGTATTTTTGCCTTCATTATCAAAGA-GTCGATGCTAGGAGAAACTT-GTTT
AGTAGCTGAATCGTAATCTTTGAAAGTCGTGCATCAAACCGAGGAAGGAAA----TTCCAGATGGCTCAGCG--------
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--------------------CAAACACTTTTCATGAATGAAACTTATCGATAGCCATTTGACAGTTTAAACCATGAGGAA
CAAAGAAAG-AAAAAGTGACGGAACACATGTGTACTCAGCATATGACAGGTTTTAA-CATTGTATGAGCAGGTAAATTAC
AGGACCATGG---AACAAAAACCT--GCTCCAATATACGATACGCAGCACCCGATTTCCAGGGTACTTCAACTCCAAAAA
GAAACTA--CTATGGTATTATGAAGACACAAGTTCCATATTATTAAAAACGATGTTCGATATCC-GAGGATATATCAGGA
ATCAGAAAACCAA------ACAATGATACTGGTAAGCGGGACGCCCAAACGGGCCACAACGCCGGAGGCAGATAGATCAG
TACTTGTAGTCCTTGAAGTGGAGGCGCTCGGAGGCGCCCTCGCCGAGGGTGGCATCGCCCTTGTAGGTGCCGAGGGTGGC
CTCAGAGTTGGCCTTGCACCTCACCAGGAATGTCGCCCTGGCCTTCTCCTCGTTCTCCCTCTTGCCAGACCAGGCCTTGA
GGGTGCTCTGCTGGAGGGCACGCCCGAAGGAGAAGGACATGTTCCAAGGCTTCTTGGTCTGGAGCTTGTTCATGGCGTTC
AGGTTCAGGGTTGCCTCCTCCTCGCTCTGCCCACCAGGAAGGAAGACAATGGCGGGGTCGGCAGC---------------
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>chr3B_191
GGAACAGATGTGTACTCAGCATATAACAGGTTTTACCATTGTATGAGCAGGTAAATTACAGGACCATGGAACAAAAACCT
GCTCCAATTTACGATACGTAGTACCCAATTTACAGGGTAATTCAACTCCAAAAATAAGCTACTACGGTATTATGAAAACA
CAAGTTCCATATTATTAAAAACGATGTTCGATATCCGAAAACCAAACAATGAAAAGTGGGATGCCAAAACGGGCCACAGC
ACCGAAGGCAGATAGATCAGTACTTGTAGTCCTTGACGTGGAGGCTCTCGGAGGCGCCCTCGCCGAGGGTGGCGTCGCCC
TTGTAGGTGCCGAGGGTGGCCTCAGAGTTGGCCTTGCACCTCACCAGGAACGCCATCCCATATGGTCGGGAGTAGACGTG
TCAAGCACCCCCTAGTCCAGGACACCATCAGGTGGCCGGTGGGGTGGTGTGCGACGGGGCCGCAGTGGCTGCCGCCGCTG
CGGTGCAGCCGCTAGGTTGGGGTTGAGAGGTGCTCATTTCAAAAACATTGTGTGCCCTAACTGGATCTAATAATTTATGA
GTGTGAAGTTGGGCTTTTTATGCCACTGTTGTTGTCTTTGAATGTTATCTCAACCAGACATAGTGTTGATGCAAAGGTGT
GTATATTTATTAGCCTATTCATCCTTTTCTCCTATTTGTTCATGGCGTAAAAGCATAGTCCTGTGATCTAAAGTCATTCA
GTTACTCCCTCCGTTGTAGTTGAGACACTTATTTTAGGACGGAGGGAGTACTTTTTTGTTCTATTGTTGTTTTTGTGCAA
AACATCCATCTTGCTTATTGAGTATTTATTTTTCTTTCTGGAAAGGTCATACCGGTTTGAAGTTTTCTCCTGTGAAATTT
TTTAGTTGGATCAAGATGGTTTTAGGAGGAATTCGTAGGTAGGTTTATGTTCCCTTGCGGATGAAAAGGTACATGTATAT
ACTAGTATATGATTGTGGTGAGCTTACTATTTTGTTTGGGGGTTGATTGGTTCAGTCTTTTCCTTTCATGCATGTGATTC
CTATGTTATAGGCTCGGGTGCTCTGTTTTTTAGATGATCGGATGAAGGCGTTTCCTCTCGTGGTGTTGTTAGGATAGAGA
AAGAGATCTTTGTTTGCATTAGTATTGGACTATTGGTGGTGTCCCTGTCCCAATTCTATTATAAGTCATTGAGCAAGATG
ATTCGAAGAACTTGTGCTTTCAGTAAGATGTTCGTGTTTGAGTTATGTACTGACAAAATATTCTTACATGGGGTCTTGTA
TCATCTGCTAGCCTTTAATTTAGTGTTATTGAGCAACTTTCCATTCGTCTCTAATTTGTCTTTGGTACAAAGCTGCGGGG
CGATGGAATACAGTGTCTTGTGCCCAAGGGCTTACAGCTTACTATCCAAAAGGCAGGTGGTTCATGTA-CATAGATTTGA
ATTGCGTTTATTACTTCAATGGCACTGTCAAACCTGTAGATGTGTAATTTA-----------CAGGTTTGAGAT---CTT
TCAGG---------AACTGGTCGATGGATTTGCTGGATGAGGACGTCGATTGGAATCTGCTGCTATGT-------GCCTT
CAAATCTGTTCC------------------TAAATATAAGTGGAATGTCTAGACTTATACTGCATTTAGGAACTGAGGGA
GTACATGACATC-AAGGAAGGAAGTGGCAGTATTTTTGCCTTCATTATCAAAATC-------------------------
-------------------TTGAAAGTCGTGCATCAAACTGACGAAGGAAA----ATCCAGACGCCTCAGCG--------
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--------------------CAATCACGTTTCATGAATGAAACTTAACGATAGCCA------------------------
---AGCAAGAAAAAAGTGACGGAACACATGTGTACTCAGCATATGACAGGTTTTAA-CATTGTATGAGCAGGTAAATTAC
AGGACCATGG---AACAAAAACCT--GCTCCAATTTACGATACGCAGCACCCGATTTTCAGGGTACTTCAACTCCAAAAA
GAAACTA--CTACGGTATTATGAAAACACAAGTTCCATATTATTAAAAACGATGTTCGATATCC-GAGGATATATCAGGA
CTCAGGAAACCAAACAATGACAATGATACTGGTAAGCGGGACGCCCAAACGGGCCACAGCACCGAAGGCAGATCAATCAG
TACTTGTAGTCCTTGACGTGGAGGCTCTCGGAGGCGCCCTCAGCGAGGGTGGCGTCGCCCTTGTAGGTGCCGAGGGTGGC
CTCGGAGTTGGCCTTGCACCTCACCAGGAACGCCGCCCTGGCCTTCTCCTCGTTCTCCGTCTTGCCGGACCAGGCCTTGA
GGGTGCTCTGCTGGAGGGCACGCCCGAAGGAGAAGGACAGGTTCCAGGGCTTCTTGGTCTGGAGCTTGTTCATGGCGTTC
AGGTTCAGGGTCGCCTCCTCCTCGCTCTGTCCACCAGAGAGGAAGACAATGGCGGGGACGGCAGCAGGGACGGTCCTCTG
GAGGGTGCGGACGGTGTACTCAGCAATCACCTCAGGGGCCACCTTCTTGGAGTCAGAACCAGGGGTGACCATGTTGGGCT
TCAGGAGAGTGCCCTCGAGGAGGACATGCTGGTCGTTGAGGGCCTTGTAGCAGGCAGCAAGGACGATCTCGGTGACGTAA
GCACAGCGGTCAATGTCATGAGGTCCATCAACAAGGATCTCAGGCTCCACAATGGGCACCAGACCATTCTCCTGGCAGAT
GATGGCATAGCGAGCCAGACCCTGAGCGTTCTGGTCGATGGAGAGCTGCGATGGCTCAGTGGCGCCGATCTTGAGGACTG
CACGCCACTTGGCGAAGCGGGCACCAGCCTCATAGTACTTGGCGCAGCGCTTGC-----CAAGGTCATCAAAGCCCTGGG
TGGTGGTCTCACCGTTGGTTCCAGCAAGCTCAATGGTACCCTTGTCCACCTTGATGCCAGGGAGGACATTGCCCGCCTTG
AGGATGTCGACGAAGGGCTTGCCACCCTTGGTGCTCTGGTACAGGGTCTCCTCAAACAGGATCACGCCGCTGAGGTACTG
GAGGGCACCAGGGGTGCAGAAGAGGAGCTCACGGAGGGCACGACGGTTGTCCTCAACGTTCTCAACATTGATGCTGGCAA
AGCGCTTGCCGATGGTGCCGGTGGACTCATCAGCAGCGAGGATACCCTTGCCAGGGGTGCCGATGTAGGCAGCGTTCTTG
ATGAGCTCATCTGCAAGATAA-TCA----ACCAAGAGTATT-ACAATCAATTGCCATAACTGTAAAT-------------
------------------------ATATTATAAATTGTGCTCAAAT------CTACAGAGCTGCAAGTTG-GTGCAACCA
TTCACAATGTTTAGCAAGCATAACAGCAAATGCAAATCAAATTTACTAACATAATTCTGACAATTGAGTACAAAATTTCA
A----------------------------------------CAAT----TTTCTAAA-----------------------
-----------------------------------ACATTGCACATGCGCAACAGGAAGGTGGTA-AA-------CATAA
GGGCAAGTGCAACTAATAATCAACATTACAGGAGAGCAAAACATACAGCTTGACTATATTTATAAGAACGGTATATTCCT
TAGAAAAATATGCCCCTAGGACCTATACAGATCTAGATTTACAGATGCAACCTTCAATAACTAAAACCAGAATTAATTAC
CACTACCACGAACCCAACAGAAACATGTGCAGATGTGTAAATCAACCTAACCACAAACTACTAGAAAAGGAAGGAACGCC
AGTATAATCATTCGCACAAAATAA-TCACCAGCATGCGCC-TAACAGCAGCAGCAAACTACAGAATTATCAGCATGCAAC
GCATCA
>chr3A_787
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------------------------------TGTACTCAGCATATAACAGGTTTTACCCATTGTATAAGCAGCAAAATTAC
ACGACCATAGTAGAACAAAAACCACCGCTCCGATTTACGATACGCAGCACCCGAGTAACAGGGTA-TTCGACTCCAAAAA
CGAAACTACCTAAGCTATTTTGAGAGCACAAGTTCCATACTAG----------GTTCGATATCCGAAGGATATATCAAGA
CTCTGAAAACCAA------ACGATAATACTGGTAAGCAGGACACCCAAACAGGCCACCGCACCGAAGG----CAGATCAG
TACTTGTAGTCCTTGACGTGGAGGCTCTCAGAGGCCCCCTCGCCGAGGGTGGCATCGCCCTTGTAGGTGCCGAGGGTGGC
CTCAGAGTTGGCCTTGCACCTCACCAGGAACGCCTTCCTGGCCTTCTCCTCGTTCTCCACCTTGCCAGCCCAGGCCTTGA
GGGTGCTCTGCTGGAGGGCACGCCCGAAGGAGAAGGACAGGTTCCATGGCTTCTTGGTCTCGAGCTTGTTCATGGCGTTC
AGGTTCAGGGTCGCCTCCTCCTCGCTCTGTCCACCAGAGAGGAAGACAATGGCTGGGACGGCAGCAGGGACAGTCCTCTG
GAGGGTGCGGACGGTGTACTCAGCAATCACCTCAGGGGCCACCTTCTTGGCGTCGGATCCAGGGGTGACCATGTTGGGCT
TCAGGAGGGTGCCCTCAAGGAGGACATGCTGGTCGTTGAGGGCCTTGTAGCACGCAGCAAGGACCATCTCAGTCACGTAA
GCACAGCGGTCAATGTCATGAGGTCCATCAACAAGGATCTCAGGCTCAACAATGGGCACCAGCCCATTCTCCTGGCAGAT
GATGGCATAGCGAGCCAGACCCTGAGCATTCTGGTCGATGGAAAGCTGTGATGGCTCGGTGGGGCCAATCTTGAGGACGG
CACGCCACTTGGCAAAGCGGGCACCAGCCTCGTAGTACTTGGCACAGCGCTTGC-----CAAGGTCATCAAAGCCCTGGG
TGGTGGTCTCACCGTTGGTTCCAGCGAGCTCGACGGTACCCTTGTCCACCTTGATGCCAGGGAGGACGTTGCCCTCCTTG
AGGATGTCAACGAAGGGCTTGCCACCCTTGGTGCTCTGGTACAGTGTCTCCTCAAAGAGGATCACACCACTGAGGTACTG
GAGGGCTCCAGGGGTGCAGAAGAGGAGCTCACGGAGGGCACGGCGGTTGTCCTCAACATTCTCAACATTGATGCTGGCAA
AGCGCTTGCCGATGGTGCCGGTGGACTCGTCGGCAGCAAGGATACCCTTGCCGGGGGTGCCAATGTAGGCAGCGTTCTTG
ATGAGCTCATCTGCAGGATAA-C-----CACCATCAGTATT-AAGATGAATTGCCATAACTATTCAGAT-----------
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>chr3D_787
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------------------------------TGTACTCAGCATATAACAGGTTTTACCATTG---TAAGCAGCAAAATTAC
ACGACCATAG---AACAAAAGCCACCCCTCCAATTTACGATACGCAGCACCCGAGTAACAGGGTA-TTCGACTCTAAAAA
CGAAACTACCTACGCTATTTTGAGAGCACAAGTTCCATACTAG----------GTTCGATATCCGAAGGATATATCAAGA
CTCTGAAAACCAA------ACAATAATACTGGTAAGCAGGACACCCAAACGGGCCACCACACCGAAGG----CAGATCAG
TACTTGTAGTCCTTGACGTGGAGGCTCTCAGAGGCCCCCTCGCCGAGGGTGGCATCGCCCTTGTAGGTGCCGAGGGTGGC
CTCAGAGTTGGCCTTGCACCTCACCAGGAACGCCTTCCTGGCCTTCTCCTCGTTCTCCGCCTTACCAGCCCAGGCCTTGA
GGGTGCTCTGCTGGAGGGCACGCCCGAAGGAGAAGGACAGGTTCCAGGGCTTCTTGGTCTGGAGCTTGTTCATGGCGTTC
AGGTTCAGGGTCGCCTCCTCCTCGCTCTGTCCACCGGAGAGGAAGACAATGGCAGGGACAGCAGCAGGGACGGTCCTCTG
GAGGGTGCGGACGGTGTACTCAGCAATGACCTCAGGGGCTACCTTCTTGGCATCGGAACCAGGGGTAACCATGTTGGGCT
TCAGGAGGGTACCCTCAAGGAGGACATGCTGGTCGTTGAGAGCCTTGTAGCAGGCAGCAAGGACCATCTCGGTCACATAA
GCACAGCGGTCAATGTCATGAGGTCCATCAACAAGGATCTCAGGCTCTACAATGGGCACCAGACCATTCTCCTGGCAGAT
GATGGCATAACGAGCCAGACCCTGAGCATTCTGGTTGATGGAAAGCTGTGATGGCTCGGTAGGGCCAATCTTCAGGACGG
CACGCCACTTGGCAAAGCGGGCACCAGCCTCATAGTACTTGGCGCAGCGCTTGC-----CAAGGTCATCAAAGCCCTGGG
TGGTGGTCTCACCGTTGGTTCCAGCGAGCTCGACGGTACCCTTGTCCACCTTGATGCCAGGGAGGACGTTGCCCTCCTTG
AGGATGTCGACGAAGGGCTTGCCACCCTTGGTGCTCTGGTACAAGGTCTCCTCGAAGAGGATCACACCGCTGAGGTACTG
GAGGGCTCCAGGGGTGCAGAAGAGGAGCTCACGGAGGGCGCGACGGTTGTCCTCAACATTCTCAACATTGATGCTGGCAA
AGCGCTTACCAATGGTGCCGGTGGACTCGTCGGCAGCAAGGATACCCTTGCCAGGGGTGCCAATGTAGGCAGCGTTCTTG
ATGAGCTCATCTGCAGGATAAATCA-------------------------------------------------------
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>chr3B_959
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-----------------------------------------------------GTTCGATATCCGAAGGATATATCAGGA
CCCTGAAAACCAA------ACGATAATACTGGTAAGCAGGACACCCAAACGTGCCACAGCACCGAAGG----TAGATCAG
TACTTGTAGTCCTTGACGTGGAGGCTCTCGGAGGCGCCCTCGCCAAGGGTGGCATCGCCCTTGTAGGTGCCGAGGGTGGC
CTCGGAGTTGGCCTTGCACCTCACCAGGAACGCCTTCCTGGCCTTCTCCTCGTTCTCCGCCTTGCCAGCCCAGGCCTTGA
GGGTGCTCTGCTGGAGAGCACGCCCGAAGGAGAAGGACAGGTTCCAGGGCTTCTTGGTCTGGAGCTTGTTCATGGCGTTC
AGGTTCAGGGTCGCCTCCTCCTCACTCTGTCCACCGGAGAGGAAGACAATGGCAGGGACGGCAGCAGGGACGGTCCTCTG
GAGGGTGCGGACGGTGTACTCAGCAATCACCTCAGGGGCTACCTTCTTGGCGTCGGAACCAGGGGTAACCATGTTGGGCT
TCAGGAGGGTACCCTCAAGGAGGACATGCTGGTCGTTGAGAGCCTTGTAGCAGGCAGCAAGGACCATCTCGGTCACATAA
GCACAGCGGTCAATGTCATGAGGTCCATCAACAAGGATCTCAGGCTCAACAATGGGCACCAGCCCATTCTCCTGGCAGAT
GATGGCATAACGAGCCAGACCCTGAGCATTCTGGTCGATGGAAAGCTGTGATGGCTCGGTGAGGCCAATCTTGAGGACAG
CACGCCACTTGGCAAAGCGGGCACCAGCCTCATAGTACTTGGCACAGCGCTTGC-----CAAGGTCATCAAAGCCCTGGG
TAGTGGTCTCACCGTTGGTTCCAGCGAGCTCGACGGTACCCTTGTCCACCTTGATGCCAGGGAGGACGTTGCCCTCCTTG
AGGATGTCGACGAAGGGCTTGCCACCCTTGGTGCTCTGGTACAGGGTCTCCTCGAAGAGGATCACGCCGCTGAGGTACTG
GAGGGCTCCAGGGGTGCAGAAGAGGAGCTCACGGAGGGCGCGACGGTTGTCCTCAACATTCTCAACGTTGATGCTGGCGA
AGCGCTTGCCGATGGTGCCGGTGGACTCGTCGGCAGCAAGGATACCCTTGCCAGGGGTGCCAATGTAGGCAGCGTTCTTG
ATGAGCTCATCTGCAGGATAA-C-----CACCATCAGTATTTAAGATCAATTGCCATAA---------------------
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>chr3D_1052
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-------------------------------------------------------------------------AGATCAG
TACTTGTAGTCCTTGACATGGAGGCTCTCCGAGGCGCCCTCGGCAAGGGTGGCGTCGCCCTTGTAGGTCCCGAGGGTGGC
CTCAGAGTTGGCCTTGCACCTCACCAGGAACGCCGCCCTGGCCTTCTCCTCATTCTCCGTCTTGCCGGACCAGGCCTTGA
GGGTGCTCTGCTGGAGGGCACGCCCGAAGGAGAAGGACAGGTTCCATGGCTTCTTGGTCTGGAGCTTGTTCATGGCGTTC
AGGTTCAGGGTCGCCTCCTCCTCGCTCTGTCCACCAGAGAGGAAGACAATGGCGGGGACGGCAGCAGGGACGGTCCTCTG
GAGGGTGCGGGCGGTGTACTCAGCAATCACCTCAGGGGCCACCTTCTTGGAGTCGGAACCAGGGGTGACCATGTTGGGCT
TCAGGAGGGTGCCCTCGAGGAGGACATGCTGGTCGTTGAGGGCCTTGTAGCAGGCAGCAAGGACGATCTCGGTGACGTAA
GCACAGCGGTCAATGTCATGAGGTCCATCAACAAGGATCTCTGGCTCAACAATGGGAACCAGACCATTCTCCTGGCAGAT
GATGGCATAGCGAGCCAGACCCTGAGCGTTCTGGTCGATGGAGAGCTGTGATGGCTCGGTGGCGCCGATCTTGAGGACTG
CACGCCACTTGGCGAAGCGGGCACCAGCCTCGTAGTACTTGGCACAGCGCTTGC-----CAAGGTCATCAAAGCCCTGGG
TGGTGGTCTCACCGTTGGTTCCAGCAAGCTCGATGGTGCCCTTGTCCACCTTGATGCCGGGGAGGACATTGCCCGCCTTG
AGGATGTCGACGAAGGGCTTGCCACCCTTGGTGCTCTGGTACAGGGTCTCCTCAAACAGGATCACACCGCTGAGGTACTG
GAGGGCACCAGGGGTGCAGAAGAGGAGCTCACGGAGGGCACGACGGTTGTCCTCAACGTTCTCAACATTGATGCTGGCGA
AGCGCTTGCCGATGGTGCCGGTGGACTCATCAGCAGCAAGGATACCCTTGCCAGGGGTGCCAATGTAGGCAGCGTTCTTG
ATGAGCTCATCTGCAAGATAAATCA----ACCAACAGTATT-ACAATCAATTGCCATAACTGTACATATATTATAAATTG
TGATCAATTGACATAACTGTACAGATATTATAAATTGTGCTCAAAACTAAAACTACAGAATTGCAAGTTGAGTGCAACCA
TTCACAACGTTAAGCAACCATAACAGCAAATGCAGATCAAATTTACTAACATAATTCTGACAATTGACTAGGAAATTTCG
A----------------------------------------CAAT----TTTCTAAA-----------------------
-----------------------------------AAATTGCACGTGCGCAAGAGGAAGGTGATA-AACATAAGCCATAA
GGGCAGGTGCAACTAATAATTAACATCACAGGAGAGAAAAACATACAGCTTGTCACTA--TATAAGCACGGTATATTCCT
TAACAAAAGATGCCCCTAGGACCTATACAGATCTAGATTAACAGATGCAACCTTCAATAACTAAAACCAGAATTAATTAC
CTCTACCACGAACCCAACAGAAACATGTGCAGATGTGTATACCAACTTCACCACAAACTACTTCAAAAGGAAGGAACGCC
AGCATCATCATTCGCACAAAATAAATCGCTAGCATGCACCTTAACAGCAGCAGCAAAGTACAGAATCATCAGCATGCAAC
GCATCA
>chr5B_1065
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------TAGTCCTTGACGTGAAGGCTCTCCGAGGCACCCTCTCCGAGGGTGGCGCCACCCTTGTAGGTGCCAAGGGTGGC
CTCGGAGTTGGCCTTGCACCTCACCAGGAACGCCGCCCTGGCCCTCTCATCGTTCTCTGTCTTGCCGGACCAGGCCTTCA
GGGTGCTCTGCTGGAGGGCACGCCCGAAGGAGGAGGACAGGTTCCAGGGCTTCTTGGTCTGGAGCTTGTTCATGGCATTC
AGGTTCAGGGTCGCCTCCTCCTCACTCTGTCCACCAGAGAGGAAGACAATGGCGGGGACGGCAGCAGGGACAGTCCTCTG
GAGGGCGCGGACGGTGTACTCAGCAATGACCTCAGGGGCCACCTTTTTGGCGTCGGATCCAGGGG---------TGGGCT
TCAGGAGGGTGCCCTCGAGGAGGACATGCTGGTCGTTGAGGGCCTTGTAGCAGGCAGCAAGGACGATCTCGGTCACATAA
GCACAGCGGTCAATGTCATGAGGACCATCAACAAGGATCTCAGGCTCAACAATGGGCACCAGACCATTCTCCTGGCAGAT
GATGGCACAGCGAGCCAGACCCTGAGCGTTCTGGTCGATGGAGAGCTGCGATGGCTTAGTGGCGCCGATCTTGAGGACTG
CACGCCACTTGGCGAAGCGGGCACCAGTTTCATAGTACTTGGCGCAGCGCTTGC-----CAAGGTCATCAAAGCCCTGGG
TGGTGGTCTCACCGTTGGTTCCAGCGAGCTCTATGGTACCCTTGTCCACCTTGATGCCAGGGAGGACATTGCCCGCCTTG
AGGATGTCGACGAAGGGCTTGCCACCCTTGGTGCTCTGGTACAGGGTTTCCTCAAAGAGAATCACAGCGCTGAGCTACTG
GAGGGCACCAGGTGTGCAGAAGAGGAGCTCACGGACGGCGCGACGGTTGTCCTCAACGTTCTCAACATTGATGCTGGCGA
AGCGCTTGTCGATGGTGCCGGTGGACTCATCAGCAGCGAGGATACCCTTGCCAGGGGTGCCAATGTAGGCAGCGTTCTTG
ATGAACTCATCTGCAAGACAA-T-----GAACATCAG-ATT-GCAATCAATCGCCATGACTATTCAGATCCTGTAAATTA
AGATCAACTGTA---------------------------------------------------CAAGTTGAGTGGAACCG
TTCACAACTTTTATGGTATAACTAACATACATGA---CAAATTGGCTATCATAATTCTGACAATTTTTACAGAAATTCCA
TCTCCACGAGGTAAACTGCACAAGATGAGTGTAACTTATCACAATATTTTACCTAACAACACATACACAACCAGACTTAG
ATAATTGACCTTAGGAAATTCTTTAGAAAGATCCGAAATTGCATCTTCACAACAGCACAAGGTGGCAA-------CATAA
GGGCAGCA------------------------------------ACAGCTTGCGAATA--GATGAGCATGGGATATTGCT
AAGCAACAGATGCCCCTAGGATCTATACAGAACTAGATTTACAGATGCAATCTTGAGTAACTAAAGCCAGAA----TTAC
CACTACCACGAACCCAACAGAAATATGTGCAGATGTGT--------------------------AAAAGGAAGGAATGCT
AGTATCATCATTCGCACAAAATAA-TCACT--------------------------------------------------
------
>chr5A_1065
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------TAGTCCGTGACATGGAGGCTCTCCGAGGCGCCCTCGCCGAGGGTGGCGACGCCCTTGTAGGTGCCGAGGGTGGC
CTCGGAGTTGGCCTTGCACCTCACCAGGAACGCCGCCCTGGCCTTCTCCTCGTTCTCTGCCTTACCGGACCAGGTCTTCA
GGGTGCTCTGCTGGAGGGCACGCCCGAAGGAGAAGGACAGGTTCCAGGGCTTCTTGGTCTGGAGCTTGTTCATGGCATTC
AGGTTCAGGGTCGCCTCCTCCACACTCTGTCCACCAGAGAGGAAGACAATGGCAGGGACGGCAGCAGGGACAGTCCTCTG
GAGGGTGCGGACGGTGTACTCAGCAATGACCTCAGGGGCCACTTTCTTGGCGTCGGATCCAGGGGTGACCATGTTGGGCT
TCAGGAGGGTGCCCTCGAGGAGGACATGCTGGTCATTGAGGGCCTTGTAGCAGGCAGCAAGGACGATCTCGGTCACCTAA
GCACAGCGGTCAATGTCATGAGGACCATCAACAAGGATCTCAGGCTCAACAATGGG------------------------
--------------CCAGACCCTGAGCGTTCTGGTCGATGGAGAGCTGCGATGGCTCAGTGGCGCCGATCTTGAGGACTG
CACGCCACTTGGCGAAGCGGGCACCAGCCTCGTAGTACTTGGCGCAGTGCTTGCCAATGCAAGGTCATCAAAGCCCTGGG
TGGTGGTCTCACCGTTGGTTCGAGCGAGCTCGATGGTACCCTTGTCCACCTTGATGCCAGGGAGGACATTGCCCGCCTTG
AGGATGTCGACGAAGGACATTGCC--------------------------------------------------------
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>SNPs
-------------------------------------S--------------------------------S-----S-SS
SSSSSSSSSS-SSSSSSSS-S-S--SSS-SSSSSSS-SS-S-SSSSSS-SS-S-S-SS--SSSS-SSSS-SSSSSS-SSS
-SSS---S-S-S--SS--SSSSSS-SS-SS--S-SS--------------------------------------------
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------------S--------------------------------------S--S---S------------S---S----
--------S----------------S------------S-SS-S-SSSS-SSSSS--------S-SSSSS--SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-----S------------------------------------------------------
--------------S----------------------SSSSSSS---------S--------------------------
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------------------------------------------------------------------------S-------
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-------------------------------------------------------S------------------------
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-----------------------------------------------------S-------------------S------
----------S------------S---------------S-------------------------S--------------
S-----------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------S-SS--S---------S-----------------------S-------------S----S----S--------
-S----------SS----S---S----------------S-------------S--------------------------
-----------------------------S-----S------S------------S-S--S-------------------
-------------------------------------------S------------SS-S--S-----------------
S-----
>forward_2173
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-------------------------------------------------------------------------ACGCAGC
ACCATCTCGTTTA-------------------------------------------------------------------
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>reverse_3761
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CTCACAACGTTTGGCAAGCA------------------------------------------------------------
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