>input_sequence_72231
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ATGGCAGAGGAGAAGAAGAAGCACAAGCACATCAAGC------------ACAAGGAGAAGAAGGACAAGGTCGGCGGCGC
CGCGGCGGC---GGCGGAGGCGAGCTTCAAGCCGTGCGGCGACGTGAAGGGCATCCGCTTCGGCGGGCAGTTCATCGTCA
AGTCGTTCACGGTGCGTCGCGCGTCGCCGCTGGAGCTGCTCCGGCTGCTGGACATCCCGCCGTCGTTCCTGAGCGAGCTG
CAGAGCCTGCCGTTCCCGTCCACCACCGCCTACATGCCCACCAGCTTCACCATCCTGGCGCACCAGGCGTGGCACACGCT
CACGCTCGGCCTGGGCACCAAGAAGTCCAAGGTGGTGCTCTTCGTGTTCGAGTCGGAGGCCATGAAGGCGGCCGTGGACC
AGCTGTGGCCGGCCATGATCCCGCTCGGGGACGTGAACAAGAAGCTCATCCGCGGCCTCACCGGCAGCGAGATGGCGCGC
TTCAAGTTCAGGAAGGGGTGCCTCACCATCTACGTCTACGCCGTGCGCCGGCTGGGTGCCGCCGGCTTCGTGCGCGCCGA
CGACCTCCGGAGGATACTGCAGGCCGTGGTGGAGCTCAAGGACTTCTTGGACCACACCGCCATGCTCGCCATGCCCAGCC
AGAGGAGCATCACCTTGCAGTCCCGGGGCACCGTGGCCCAATGA------------------------------------
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>chr1B_1_TraesCS1B01G293400
CCATAATTCTTCCATGGATTCGTCTTTAATCTTACCATACTTCTAAGTGTAGGAAGTGCCATCTGTGGCCGATAGCCTTT
TGTTTGTCAAGATCCTCACCTCATCAGTTTCCGACAGGTCACAC--CTTCAAGGGCATTCGCTTTCGCAGTTGCCGTGAC
TGGAAAAGAACAAAGGAAGTTTGAACCTGATCTTCTGAGGATTGTTGCTGCTTCTCCGCGAGGGAACATTGATTTCCTTC
AGGAT----------CGGGTACGTAACATGTTTTCGAGGGAGTATAATTGCGATCGAATTCTGTCGTTGGCTGCTCTAGA
TTGATCTTCTTCTTTCATTACTCACATACTTTTTATATTGCTCCAAGAAATTAATCAATCATCATGAACACCCAGGACAA
ATTAAGAATAGTGTTAAAAGTGGAACCAGATTTAGAAATGCGCACCAGCAGGGCCTCATTATTAAGTCTGAAACTACTCG
GTGTTCTTTGGCAGAGCCTATGATCATGCGCCACCTTTTAGGGAGTATGATCTTTAGCTTCGTTGCTATGATGGCTGGCC
GCACTAAAAAGCATCAGGGAGGGAAAGCACACACTAATTATTATTACTAATACAAATGGGCCAAAGTAAGCAGAGACACA
--CGCGTGCGCGTGTTTAAACAATCAATGATAACTTCGTTTATAAAACTGAAAAAAAATCGTTTTATATGACGAGGCGGG
GGCATCGGCAACCGACAGCGCCTCCGTGTTCTCTGCCCAACCGAAGAGATTACAAAAATACCAAGTATACGATAATAAAG
CTA---ATTAAGCTCGTCCTGAATAATGTCCAAGTGGTGAAGTGGATGGTCCTTCGCTCTGACTAGAAACTTTGCGGTAT
GGTCGTACCAGCAGCCGCTGCAGGAGGAGGCACAGCGAAGGGAAGGGAGGTGGCGGTGGGGCTCCTCATTACGGCCTTTT
CCCTAGCAGCACAGCCCACTCCAGCAGGGG-------------------AAAGCAAAGGAGCGGCACGCCA----TCGCC
ATGGCAGAGGAGAAGAAGAAGCACAAGCACATCAAGC------------ACAAGGAGAAGAAGGACAAGGTCGGCGGCGC
CGCGGCGGC---GGCGGAGGCGAGCTTCAAGCCGTGCGGCGACGTGAAGGGCATCCGCTTCGGCGGGCAGTTCATCGTCA
AGTCGTTCACGGTGCGTCGCGCGTCGCCGCTGGAGCTGCTCCGGCTGCTGGACATCCCGCCGTCGTTCCTGAGCGAGCTG
CAGAGCCTGCCGTTCCCGTCCACCACCGCCTACATGCCCACCAGCTTCACCATCCTGGCGCACCAGGCGTGGCACACGCT
CACGCTCGGCCTGGGCACCAAGAAGTCCAAGGTGGTGCTCTTCGTGTTCGAGTCGGAGGCCATGAAGGCGGCCGTGGACC
AGCTGTGGCCGGCCATGATCCCGCTCGGGGACGTGAACAAGAAGCTCATCCGCGGCCTCACCGGCAGCGAGATGGCGCGC
TTCAAGTTCAGGAAGGGGTGCCTCACCATCTACGTCTACGCCGTGCGCCGGCTGGGTGCCGCCGGCTTCGTGCGCGCCGA
CGACCTCCGGAGGATACTGCAGGCCGTGGTGGAGCTCAAGGACTTCTTGGACCACACCGCCATGCTCGCCATGCCCAGCC
AGAGGAGCATCACCTTGCAGTCCCGGGGCACCGTGGCCCAATGATCCTCCCTCCGATCGATGGCCTCTTGCTCGATCCAT
TTCTGCAGTGCAGGTACTGTTATTATTGGCTCGCAATTCGCAAAGAAATGTCTGATTCTTTTGGGTTGGATTAGTTTGTT
CGTTCACTGTCGGTGTTCCCCTCCCCTGCCGGGAGCTGTATAGATCTATATATGTCGAGCAAAATCTTTGAAACAGATTA
AGCATAGAGATTTTCCCAAAGGAAAGGATCTTACTCCACTTTTAGTATACTCCTGCCTCTGAAATTATCCTTCATCAATG
AAGAAGCCATCTGTTCTGTTCAT------TGAGAGGCATTTTCATGTAGCATTGTACAGCACGTGC---TGCCACAGCTC
TTTTTGTACAGTTTCTGGAAATTGCTGTGCACACGGTCCTTTGTGTTCCTCCATGCACTCATTGTTTCACAAATCTAGAA
TGAATTTTTT----GTATGAGATTGTAAACCACATGCTGGTGTTTTTTTTAACTTCTTCTGGAAAAACTCTGTTGTTAT-
---------------------------------TGGAGATTGGAGTTTATCCAGAAGTCCAGATTCGAGAGAGGAAAGTG
AAGGGTGCAGAATCAGAGAGAAAGTGGGTGCTGCTTATCTGCTGCTTACGTGGCAGGCAACCATCTCGTGTAGTATTGGT
GGGTAGGTAGTGAGGATGAATATATGCTCTGTTTTTCACCTGTGACGTGAGGGAGCGAACTCTGCTTCGTGCCCATATGT
GGCGCTGGCCGAGGCAGATCCACAGAGGTAGTCCTGCTTG---GACTGGAATAGTACATACTAAGACCAATGGCACTGCG
AGTCTTGACCAGGAGTTCATGC-------------------------------TTCACACCGTGGATGGGTAC-------
--TCGGTTTCACACTTTGAGAAAATATACTAGACCAGACCCATGAGGACAGAGGACAGATGCATGTGCGTCATCATGGTC
GTGTTGTAGCAGTTAAAAGTTTGTTGGGCATCCAGGACACTCCCGAAACAGTTGAGTGACACGATCGGTATTTAAGTGGT
TGAGCGACGAGCAG
>chr1D_1
CCATAATTCTTCCATGGATTCGCCTTTAATCTTACCATACTTCTAAGTCTAGGAAGTGCCATCTGTGGCTGATAGCCTTT
TGTTTGTCAAGATCCTCACCTGATCAGTCTCCGACAGGTCACATAGCTTCAAGGGCATTCGCTTTCGCAGTTGCCGTGAC
TGGAAAAGAACAAAGGAAGTTTGAACCTGATCTTCTGAGGATTGTTGCTGCTTCTCCGTGAGGGATCATTGGTTTCCTTC
AGGATCAACTGCTGGCGGGTACGTAACATGTTTTCGAGGGAGTATAATGGTGATCGAATTCTGTCGTTGGCGGCTCTAGA
TTGATCTTCTTCTTTAATTACCCATGC---TTTTATATTTCTCCAAGAAATCAATCAATCATCATGAACACCCAGGACAA
ATTAAGAATAGTGTTAAAAGTGGAACCAGATTTAGAAATGCGCACCAACAGGGTCTCATTATTAGGTCTGAAACTACTCA
GTGTTCTTTGGCAGAGCCTATGATCATGTGCCACCTTTCAAGGAGTATGATCTTTAGCTTCGTTGCTATGATGGCTAACC
GCACTAAAAAGCATCAGGGAGAGAAAGCATACACTAATTAC---TACTAATACACATGGGCCAAAGTAAGCAGAGACACA
--CGCGTGCCCGCACTTAGACAATCGC-GATAACTTGGTTTATAAAACTGAAAAAA--TCGTTTTATATGACGAGGCGGG
GGCATCGGCAACCGACAGCGCCTCCGTGTTCTCTGCCCAACCGAAGAGATTACAAAAATACTAAG--TACGATAATAAAG
CTACTAATTAAGCTTGTCCTGAATAATGTCCAAGTGGTGAAGTGGATGGTCCTTCACTCTGACTAGAAACTTTGCGGTAT
GGTCGTACCAGCAGCCGCTGCAGGAGGAGGCACAGCGAAGGGAAGGGAGGTGGCGGTGGGGCTCCTCATTACGGCCTTTT
CCCTAGCAGCACAGCCCACTCCAGCAGGGG-------------------AAAGCAAAGGAGCGGCACGCCG----TCGCC
ATGGCAGAGGAGAAGAAGAAGCACAAGCACAGCAAGCACAAGGAGAAGGACAAGGAGAAGAAGGACAAGGCCGGCGGCGC
GGCGGCGGCGACGGCGGAGGCGAGCTTCAAGCCGTGCGGCGACGTGAAGGGCATCCGCTTCGGCGGGCAGTTCATCGTCA
AGTCGTTCACGGTGCGGCGGGCGTCGCCGCTGGAGCTGCTCCGGCTGCTGGACATCCCGCCGTCGTTCCTGAGCGAGCTG
CAGAGCCTGCCGTTCCCGTCCACCACCGCCTACATGCCCACCAGCTTCACCATCCTGGCGCACCAGGCGTGGCACACGCT
CACGCTCGGCCTCGGCACCAAGAAGTCCAAGGTGGTGCTCTTCGTGTTCGAGTCGGAGGCCATGAAGGCGGCCGTGGACC
AGCTGTGGCCGGCCATGATCCCGCTCGGGGACGTGAACAAGAAGCTCATCCGCGGGCTCACCGGCAGCGAGATGGCGCGC
TTCAAGTTCAGGAAGGGGTGCCTCACCATCTACGTCTACGCCGTGCGCCGGCTGGGCGCCGCCGGCTTCGTGCGCGCCGA
CGACCTCAGGAGGATACTGCAGGCCGTGGTGGAGCTCAAGGACTTCTTGGACCACACCGCCATGCTCGCCATGCCCAGCC
AGAGGAGCATCACCTTGCAGTCCCGGGGCACCGCGGCCCAATGATCCTGCTCCCGGTCGACAGCCTCTTGCCCGATCCAT
TTCTGCAGCGCAGGTACTGTTATTATTGGCTCGCAATTCGCAAAGAGATGTCTGATTCTTTTGGGTTGGATTAGTTTGTT
CGTTCACTGTCGGTGTTCCCCTCCCCTGCCGGGAGCTGTATAGATCTATATATGTCGAGCAAAATCTTTGAAACAGATTA
AGCATAGGGATTTTCCCAAAGGAAAGGATCTTACTCCACTTTTAGTATACTCCTGCCTCTGAAATTTTCCTTCATCAATG
AAGAAGCCATGTGCGTT---------CTATGAGAGGCATTTTCATGTAGCATTGTACAGCACTTGCTG-TGCCACAGCTC
TTTTTGTACAGGTTCTGGAAATTGCTGTGCACACGGTCCTTTGTGTTCCTCCATGCACTCATTATTTCACAAATCTAGAA
TGAATCTTTTGTAAGTATGAGATTGTAAACCACATGCTGGTGTTTTTT---ACTTCTTCTGGAAAAACTCTGTTGTTATG
GTCTTATGGAAAAACTCTGTTGTTATGGTCTTATGGAGACTGGAGTTTATCCACAAGTCAAGATTCGAGAGAGGAAAGTG
AAGGGTGCAGAATCAGAGAGGAAGTGGGTGCTGCTTAT---CTGCTTACGTGGGAGGCAACCATCTCGTGTAGTATTGGT
AGGTAG----TGAGGATGAATATATGCTCTGTTTTTCACCTGTGACGTGAAGGAGC----TCTGCTTCGTGCCCATATGT
GGTGCTGGCCGAGGCAGATCCACAGAGGTAGAGCTGCTTG---GACTTGGAATAGTGACG---TATTCTGCACGAATGCA
TGCAAAAATAATCGAGTGTACATA-------------------TGACCAGGGGTTCATACCGTGGATGTGTAC-------
--TACTCGGTTTTCACTTGGGAAGTATACTAGAGTAGACCCAGGAGGACAGACGCATGTG--------------ATGGTC
GTGTTGTAGCAGTT-AAAGTTTGTTGGGCATCCAGGACACTCTC-AAACAGTTGAGTGACACGATCGGTATTTAAGTGGT
TGAGCGACGAGCAG
>chr1A_1
CCATAATTCTTCCATGGATTCGCCTTTAATCTTACCATACTTCTAAGTGTAGGAAGTGCCATCTGTGGCCGATAGCCTTT
TGTTTGTCAAGATCCTCACCTGATCAGTCTCCGACAGGTCACATTGCTTCAAGGGCATTCGCTTTCGCAGTTGCCGTGAC
TGGAAAAGAACAAAGGAAGTTCGAACCTGATCTTCTGAGGATTGTTGCTGCTTCTCCGCGAGGGATCATTGGTTTCCTTC
AGGATCAACTGCTGGCGGGTACGTAGCATGTTTTCGAGGGAGTATAATTGTGATCGAATTCTTTGGTTGGCGGCTCTAGA
TTGATCTTCTTCTTTAATTACCCATGC---TTTTATATTTCTCCAAGAAATCAATCAATCATCATGAACACCCAGGACAA
ATTAAGAATAGTGTTAAAAGTGGAACCAGATTTAGAAATGCGCACCAACAGGGTCTCATTATTAGGTCTGAAACTACTCG
GTGCTCTTTGGCAGAGCCTATGATCATGTGCCACCTTTTAAGCAGTATGATCTTTAGCTTCGTTGCTATGATGGCTGGCC
GCACTAAAAAGCATCAGGGAGAGAAAGCATACACTAAT------TACTAATACAAATGGGCCAAAGTCAGTAGAGACACA
GACGCGTGCGCGTACTTAAACAATCGC-GATAACTTGGTTTATAAAACTGAAAAAC--TCGTTTTGTATGACGAGGCGGG
GGCATCGGCAACCGACAGCGCCTCCGTGTTCTCTGCCCAACCGAAGAGATTACAAAAATACTAAG--TACGATAATAAAG
CTACTAATCAAGCTTGTCCTGAATAATGTCCAAGTGGTGAAGTGGATGGTCCTTCACTCTGACTAGAAACTTTGCGGTAT
GGTCGTACCAGCAGCCGCTGCAGGAGGAGGCACAGCGAAGGGAAGGGAGGTGGCGGTGGGGCTCCTCATTACGGCCTTTT
CCCCAGCAGCACAGCTCACTCCAGCAGCGGCAGCGACTGCAGGGAAAGCAAAGCAAAGGAGCGGCACGCCAGCCATCGCC
ATGGCAGAGGAGAAGAAGAAGCACAAGCACAGCAAGCACAAGGAGAAGGACAAGGAGAAGAAGGACAAGGCCGGCGGC--
-GCGGCGGCGGCGGCGGAGGCGAGCTTCAAGCCGTGCGGCGACGTGAAGGGCATCCGCTTCGGCGGGCAGTTCATCGTCA
AGTCGTTCACGGTGCGTCGCGCGTCGCCGCTGGAGCTGCTCCGGCTGCTGGACATCCCGCCGTCGTTCCTGAGCGAGCTG
CAGAGCCTGCCGTTCCCGTCCACCACCGCCTACATGCCCACCAGCTTCACCATCCTGGCGCACCAGGCGTGGCACACGCT
CACGCTCGGCCTCGGCACCAAGAAGTCCAAGGTGGTGCTCTTCGTGTTCGAGTCGGAGGCCATGAAGGCGGCCGTGGACC
AGCTGTGGCCGGCCATGATCCCGCTCGGGGACGTGAACAAGAAGCTCATCCGCGGCCTCTCCGGCAGCGAGATGGCGCGC
TTCAAGTTCAGGAAGGGGTGCCTCACCATCTACGTCTACGCCGTGCGCCGGCTGGGCGCCGCCGGCTTCGTGCGCGCCGA
CGACCTCAGGAGGATACTGCAGGCCGTGGTGGAGCTCAAGGACTTCCTGGACCACACCGCCATGCTCGCCATGCCCAGTC
AGAGGAGCATCACCTTGCAGTCCCGGGGCACCGTGGCCCAATGATCCTGCTCCCGATCGATGGCCTCTTGCTCGATCCAT
TCCTGCAGCGCAGGTACTGTTATTACTGGCTCGCAATTCGCAAAGAGATGTCTGATTCTTTTGGGTTGGATTAGTTTGTT
TTTTCACTGTCGGTGTTCCCCTCCCCTGCCGGGAGCTGTATAGATC--TATATGTCGAGCAAAATCTT-----------A
AGCATAGAAATTTTCCCAAAGGAAATGATCTTACTCCACTTTTAGTATACTCCTGCCTCTGAAATTATCCTTCATCAATG
AAGAAGCCATGTGCTCTGTTCTATGACTATGAGAGGCATTTTCATGTAGCATTGTACTACAGCAGTTGTTGCCACAGCTC
TTTTTGTACAGATTTTGGAAATTGCTGTGCACACCGTCTGGTGTTTTTTTTTTC--------------------------
------------------------------------------TTTTTT---ACTTCTTCTGGAAAAACTCTGTTGTTAT-
---------------------------------TGGAGATCGGAGTTTATCCAGAAGTCCAGATTCGAGAGAGGAAAGTG
AAGGGTGCAGAATCAGGGAGAAATTGGGTGCTGCTTGT---CTGCTTACGTGGGAGGCAACCATCTGTTGTAGTATTG--
--GTAGGTAGTGAGGGTGAATATATGCTCTGTTTTTCACCTGTGACGTGAAGGAGCGAACTCTGCTTCGTGCCCATATGT
GGTGCTGGCCGAGGCAGATCCGCAGAGCTAGCCCTGCTCATGTGACTTGGAATAGTGACATTATATTCTGCGCGAATGCA
TGCAAAAATAACCAAGTGGATACAAGAACGGTGCTACATGCTTTGACCAGGGGTTCATACCGTGGATGTGTACCGCTACC
GCTAGTCGGTTTTCACTTGGGAAATATACTAGAGTAGACC---GAGGACAGACGCATGTG--------------ATGGTC
GTGTTGTAGCAGTT-AAAGTCTGTTGGGCATCCAGGACACTCCCGGAACAGTTGAGTGACGCGATCGGTATTTAAGTGGT
TGAGCGACGAGCAG
>SNPs
----------------------S---------------------------------------------------------
---------------------S------S--------------S------------------------------------
-----------------------------------------------------------------S-----S--------
--------------------------------------------------S--------------------S--------
---------------S-----S--SSSSSS---------S-----------S----------------------------
-----------------------------------------------S-----S----------S---------------
----------------------------S-----------S---------------------------------------
---------------------S-------S----------SSSS------------------------------------
-------------SS----------SSS--------S-------------------SS----------------------
-------------------------------------------------------------S---SS-------------
--------------S----------------------------------------S------------------------
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-------------------------------S--------------------------------------S---------
S-------------------------------------------------------------------------------
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------------S-------------------------------------------------------------------
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--------------------------------------------------------S-----------------------
-------S------------------------------------------------------------------------
------------------------------------------------S-SS----------------------------
--------S-------------------------------------S---------------------------------
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----------S--S-------SS---------------------------------------S-----------------
-----------S---------------------------------------------------S----------------
-----S------------------------------------------SSS-----------------------------
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--------------------------------------SSS------------S--------------------------
S-------------------------------------------------S-----------------------------
--S----------------------------S---------------S-S-SSSSSS-S-S--SSSS-SSS-SS-S---S
S-SSSSS-SS-SS-SS-SSSSS-----------------------------------S----------S-----------
---S-SSSSSSSS-SS-SS-S------------SS-------S---------S-SSS-SSSSSSSSSSSSSSSS------
--------------S-----------------------------------------------------------------
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>forward_590
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----------GCATCAGGGAGGGAAAGCAC--------------------------------------------------
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>reverse_2701
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------------------------------------------------------------GCATGTGCGTCATCATGGTC
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