>input_sequence_72223
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------------------------------GCGCCTTCTCCTAGCCCCTTCCTTCCTTCCCTCCCCCCTTCATTCCTTCA
TTCCTTGGAGACATGGCGATGGCGGCGCCCAAGCTCATGGTGCCAGGCCTGTGCCTGCTTCTGCTGATCATGCCGCTCCT
CTTGCTCCCTGGTAAGCCTTGC--------CTGAAAGAAATTCATCCATCTGAAGAA-CACGGCACTTCATCGGTGTTCC
TG-------TTCCTGAGCAGATGTTATGCTGTCCTTTTC------------TCATCGTGCAAAGAAGAAAAAAAAGGAAA
TCTGATGATGCTATGCTGT--------CCTTCACCTGCAGGATCTCAAGGGGCGACTTGCAAGGAGCTGAGCAAGACCTA
TGACTCTCCCAACTGCGAGACCGGCCGATGCGTGGAGCACTGCCAAGTGGAGGGCTACGGTAGCGGGGTGTGCCAGGGGA
GCTACTTCGACCCCTACAAGATACTCTGCTTCTGCAACAAAAACTGCTGAGCCGCCAGCGACGGCGCATTGCTTCGGGCC
GGGGTGTAATAAGATGTTAGCTAAGGCGAGCCGTCGTCGATGCGCGACTCGCACAAGTTTGTAGCTGTAATAGGTTTCAT
CTGTACCAATTTTATTTTCAACTGCTCGTCTCCCCAGTTAAGAGATTGGTCGTCAGCTTGCGGAAATGGATCGCTTGTTC
CGCTCTTTTCATTTCG----------------------------------------------------------------
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>chr5A_1_TraesCS5A01G046400
ATTGCAAGTGGTTCAGCAAGACCTACACTACTTTTCACTGTGCGGACAACCCATGCGCTGAGCACTGCCGCAACGAGGGC
TTCCCTCGTGGGTGGTGTGAGTTCGTCGCCTTAGAACCTCTCGCCTTAGTCTGCTTCTGCAGGAAACCCTGCTGATGATG
CTTGTGAAGTAATAATACTGTTGTGTGTTTATAAGGAAGTGTACATGTG-AACTTCTATGTCGTATTTGCCGTGAAGAGC
AGAT---------------------CAGTATAATAAAGGTGAAGTTGCAATAGTCTGCCTCCCTTTTGGGTTCATCCTGA
TGAGCAGGAATCATATTAAGCTCTTGATGGTCCTCTCTGCTGATGAAATCTTTTATTGGTGTGAATAAGTAGAGACTGAT
GCCTTTGTCTCTTGTATTATTGGAATCAAAACAGAGCATGCTACAAATGCAGAGATATGGACATAGCTGCTGTGACATGA
TTATGTCTACTCGATTGTTTGTATGTGAATCCATCTCTAGTGTTACTTGAACATCCAAAGACCAATCTCCAGTAGACACA
AACATTAAAAGTATTTCAATCTGGTTATAACTATCT--------------------------------------------
---------------------------------------------------ATTATGCAGTGAGATCATACCATAGTGTC
TTCCTTCACCTGGAACTGTTGGTGATTAGCACTTCACCCCCTA-------------------------------------
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--------------------------------------------------------------------------ATATTC
TCTCTTAGAAGGTGATTAAGAGGGACCATCTTAAATTCTCGCTTATTTCTTAAATTCTCTCTTATTCTGGTCAATACTTT
CTTAGAAGGTAATTAAAAGGGACCATCTTAAAATCTCTCTCATTCTGCTCAAATGAGGAGTGTGTGAC--TGAGAGGAGT
ATAAGCTGTCCCCGTATCTTTTCAGCATGTGGGCTTTAAATGGTCCATATATTTTCAGTAAATTCCCAGCAGATTGCTTT
CCAATGCACAGCACAACATTTTGGATTACCAAGCAGCAGGTAAATGCATCCTAAGGTCTCATCCTCCATGGCTGGCTATA
AGAAGAGACGCCAATCACCAGTTTGGATCTGCGCCTTCTCCTAGCCCCTTCCTTCCTTCCCTCCCCCCTTCATTCCTTCA
TTCCTTGGAGACATGGCGATGGCGGCGCCCAAGCTCATGGTGCCAGGCCTGTGCCTGCTTCTGCTGATCATGCCGCTCCT
CTTGCTCCCTGGTAAGCCTTGC--------CTGAAAGAAATTCATCCATCTGAAGAA-CACGGCACTTCATCGGTGTTCC
TG-------TTCCTGAGCAGATGTTATGCTGTCCTTTTC------------TCATCGTGCAAAGAAGAAAAAAAAGGAAA
TCTGATGATGCTATGCTGT--------CCTTCACCTGCAGGATCTCAAGGGGCGACTTGCAAGGAGCTGAGCAAGACCTA
TGACTCTCCCAACTGCGAGACCGGCCGATGCGTGGAGCACTGCCAAGTGGAGGGCTACGGTAGCGGGGTGTGCCAGGGGA
GCTACTTCGACCCCTACAAGATACTCTGCTTCTGCAACAAAAACTGCTGAGCCGCCAGCGACGGCGCATTGCTTCGGGCC
GGGGTGTAATAAGATGTTAGCTAAGGCGAGCCGTCGTCGATGCGCGACTCGCACAAGTTTGTAGCTGTAATAGGTTTCAT
CTGTACCAATTTTATTTTCAACTGCTCGTCTCCCCAGTTAAGAGATTGGTCGTCAGCTTGCGGAAATGGATCGCTTGTTC
CGCTCTTTTCATTTCGTTCCTGTTGAAAAGGAATTTCTATCTATCTATATGATCTATCTACTCCTATATGATCTATCTAT
CTGCGGGTGCAAAGCCCAAGCCGAACCTGCACAAAACCCAGAAAACAACAAGGATCATTACCGTTGCTGCCGATTCTGGA
AGACTCGCATGTTCATGTGTCCACGGTAATTTCCTCCATATCTTTTTCTTCAGAGTGTTTCCAAATGGCAGCACATCACC
AGGTCATCCAGATATAATATCATTACCAATTGCATCATAATCACAGTCACCTTTAAAAAAAAATCTTGTTCAACCATCCC
TGGCTCCCTATAAGAAGGTATTGATGATGACATGCATTAATAGCCTATATCTGCATATTTCTTCTTATATCCTTTGCCTA
AAAAACAACATCTATCTGATTTCAACAATATACAGATGACACTGCGTTCTTCCTCAGAGGTGTTCTATTCTTGTTTTGTG
AGTGTACAAGGCCGCCGTGTGCTTTCACGCTTGGTTCGCCGAGACGATGGCTTGTCAGGAAGCGGCCCGAGTCGCCCAAC
ATTTATGTTCAGAGTTGGCCCAAGCCTACTGGACTGGGACTACGATGTGATAGATCCCTCTGGATCGGATCGGCCTGAGA
TTTTCGGTAGTAGTGATAGGTATTACCTTCTCCTGGTGCGTTGAACTGCCGCCAGTGGCCATGATGGGATGGTGACGGCG
GCGATGAGTGGACAGAGAGATAGCGGTGGCGGAGCTTCCCGTCGCTGTCAGCTCCGCCTCGATCAGTAGGCAGGGCAGGT
GGGGTGCGAACCATTCTTCAGCATTCTGCACTCGTGGCCCCCACCTCCCTTATATGGAGCTGTGTGACAGGGGCCCGCAA
CCCAGTTGAGTTGAGTGTCCTCGATCAGGACTGAGTCAAGGGTCCAGTTGGCCGTTGGGCCAACTAAGAGGAGATCAACA
CTAACATTCTCCCCCTTGATCTCACCTTATACTTTTAACTTCACACTTTGACGTAA
>chr5D_1
ATTGCAAGGTGTTGAGCAAGACCTACACTACTTTTCACTGCACGGACAATCCATGCGCTGAGCACTGCCGCAATGAGGGC
TTCCCTCGTGGGTGGTGTGAGTTCGTCTCCTTAGAACCTCTCGCCTTAGTCTGCTTCTGCAGGAAACCCTGCTGATGATG
CTTGTGAAGTAATAACACTGTTGTGTGTTTGTAAGGAAGTGTATATGTG-AACTTCTATGTCGTATTTGCCGTGACGAGC
AGATTAGCATAGAATTCACCTAAGTCAGTATAATAAAGGTGAAGTTGCAATAGTCTGCCTCCCTTTTGGGTTCATCCTGA
TGAGCAGGAGTCACATTAAGCTCTTGATGGTCCTCTCTGCTGATGAAACCTGTTCTTGGTCTGAATAAGGAGAGACTGAT
GCCTTTGTCTCTTATGTTATTGGAATC--AACAGAGCATGCTACAAATGCAGAGGTATGGACATAGCTGCTGTGACATGA
TTATGTCTACTCGATTGTTTGTATGTGAATCCATCTCTAGTGTTACTTGAACATCCAAAGACCAATCTCCAGTAGACAAA
AACATTAAAAGTATTTTGATCTGGTTATGATTATCT--------------------------------------------
---------------------------------------------------ATTGTACAGTGAGATCATGCCACACTGTT
TTCCTTCACCCGGTACAGC----GATTAGCTCTTCAACCCCTAATCTT--------------------------------
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>chr5B_11
----------GTTGAGCAAGACATACACTACTTTCCACTGCGCGGACAATCCATGCCTCGAGCACTGCCACAAGGAGGGG
TTCCCTCGTGGGGAGTGTGAGTTCGTCGCCTTAGAACCTCTCGCGTTAGTCTGCTTCTGCAGGAAACCCTGCTGATGATG
CTTGTCAAGTAATAACACTGTTGTGTGTTTATAAGGAAGTGTATATGTCAAACTTGTATGTCGAATTTGCCGTGACGAGC
AGATCAGCATAGAATTCACCTAAGACAATGTAATAAAGGTGAAGTTGCAGTAGTGTGCCTCCCTTTTGGGTTCATCCTGA
TGAGCAGGAATCATATTAAGCTCTTGATGGTCCTCTCTGCTGATGAAATCTGTTCTTGGTCTGAATAAGGAGAGAC----
----------------------------------------------------------------AGCTGCTGTGACATGA
TTACGTCTACTGGAGTGTTTGCATGTGAATCCATCTCTAG---TACTTGAACATTCAAAGACCAATCTCCAGT---CATA
AACATTAAAAGTATTTCGATCTGGTTATAATTATCTACTCCCTCCATCTCAAAATAAGTGTCTCAAGCTTAGTACAACTT
TGTATTAGAGCTAGTACAAAGTTAAGACAGTTATTTTGGGACGTAGGGAGTATTATACAGTGAGATCATGCCACGCTGTT
TTACTCCACCCGGTGCAGC----GATTAGCACTTCATCCCCTAATCTTTGTGTGAGGCATGGAGCAGTAAAGGGAAAATC
AGGAGGATATGTATCCATGAAGTGGACAACAGAAAAAAAAAGCACAGTAACAAAATAATAGCACAATAGTGTTCTAACTA
AATTGTTGTATAAATAAGAAAAACAGAAAACTGTACAAGTTCTGGCCGCTCTGAATAATAATATTGATAACAACAACAAT
AATAATAATACTTGAATTTATTAATATTATGAACACATTCGAGTACACCACAGCATTAATTTCTTAACCCAGACTTAATT
ACATCGTCTTGTTCTTCGTTTACAGACCATCCATGCCTATGACAAGAGATCACTTACACTTTACTCCGCATTTCTTTTTG
CTAATCTTTACTCCGCATATTAGGTTTAAATTTATCAACATTTACAATACCAAATAAATATATTATGAAAATATATTCCA
TAATAGATCTAATTATATTGATTTGGTATCATGAATGGTATTTTTCTACGAAAAATGTATTTGGCAACCGTGTGGCAGAT
TGCGAAACTGCCACACGCATCCAGCGCCGTCAGTTTCCTCCCGATCTCCTTCCTTTCCCGCATGTCCTCTTGATTTCTTT
CCTTTCTCGCACGCCTCCCGATCTCCTTCCTTCCCCGCACGACCTCCCCCGATTTCTTTCCTTTCCCGCACGCCCTCCCC
GATTTTATCGGGCACACCCGCTCGTGCCTTCCTAATTTTTGTAATCGTCAATTATGGCCCACGCGCCTTCCCGATTTTCA
GCAAAAATAATGCTTGGACTAGGATTTGATCTCCGTTCTGCAGGTAATCAACAGATGGAGCTAACCACCTCACCTATGAC
ACTCATTGTTGAGCAAGCTAAGGGAAATACTGTTTTTGACATGTTCGTGGTAACTTTGATCATTGGGAATAAATTTGTTG
AACCCGCCCCCCGGTAATTTCTGTAAATAGCACGATAACATTCACGCCATAGACCTGATAATTTAGATACAAACATCATG
GTAACTTTAACCATTGGGGAAGACAAATGTGAAAAGATACCCGATAATTTATGTGTAAATAGATGATAATATATGCAGCG
CACATCTGATAACTAAGGTAGAAACACCATGGTAACTTTGACCGTATGGATTTTTTTTTGAAATGATACTCCGGCATCTA
CTGTGTAAATAGCACGGTAGGATACCTCCCTCCCCTGGCATTTTTATGTGTAAATAGCATGAAAACATATGCACTGCGAT
AACTAAACATCATGATAAGTTTTTGACCCGTGGGGGGAGGGGGATTTGCTAAAACATACCCCTGATAAATTTTGTGTAAA
TAGCATGATATTTTAAGCACTACAGGCTTGATAGGTTACCTAGAATCACCATGATAACTTTTTGTCCCGGGAAAAAGTTG
TTCAAAACATCCTCAATATTTTTTGTGTAAATAACATGATAATATAAGCACCGATAACCGATAACTTGCAATATAAACAT
GATGGTAACTTTTTTATCAAAGGAAACTAAGTTGTTAAAAACATACACTCGCCCCGCGCGTGGGCCTCTTGGATGAACAA
AACGCATGGTGTGCCACGAGAAAGTCACATAATGTTTAGTGTCATGAGGGGCACACGTGCTATAGGCGTGATAAGTTACG
CAAAAACTTCGTGGTAATTTTTGACCTATGGAAAAAGCTACCGAGACACACCCAGGTTTTTAGGTGCAAGTACCATGATA
ATATACGAACTGTAGACCCGGTAACTCATGTACAATCCTTCATGATAACTTTGACCGGGGGGAGGTTGATGTACATATAC
CCTGATAACTTATGTGTAAGTACCACAGTATTTTACACATCGAAGACCTTATAACTTGTGTACAAAACACAGTGGTAACT
TTGAAGGGATGTAGTTGTTGAAGCATAGATACCTGGTATATTCTATGTAAATAGCATGGTAAGTTATGCAACACAGGCCT
GATAATTTGCATACAAATACCATGATAACTTTGTCCTGAGGAGAAATCATGTGGTAGACGTGAAGAAGTGACAATTTTCT
CAGGGGTGGGCGTCTGAGATGTGCGGGAGAAGCAGGTTTCTCGGGCGAGCCTACAGGGTCGTTTCAGAGTTGGCGAGGTC
AAAGGACAAGGAATCGTGTGGTACTTTAAAATGAAAAAAGTAGAGGTGTGGCAGTTTTGTTTATATGGCACACGTGTGCC
AAATATCACAGTCCATTTTTCTATAATCTTTATCAAATTTCATAAAATTTGACTCAAGGCAAATGTAAGATGCAAGGTAG
AAAAGAAACATCATCTGGTTTTCTCTGCGCTTACTATGCGGTGTTTCTTCTGGGAGATGTGGGGGTCTTCAAAGTGCTTA
TGCTTCCTCAAGTCCATCCATCCATCCACTGGTCAAATGAAGAGTCTGTGAGAGGAGCTGCCCCCCAGAAGTTGCGCAAA
TCAAAGAAATAAAAGACGGTGATACTAAACGTGTGTTCCAGATATATTAGTAGCACTTCACCCCCTAATCTTTGTTGGAG
GCATGCAGCAGTAAAGGGAAAATCAGGAAAAAAATGTATCCATGAAGTAGACAAGAGAAAGAAAAAAACATAGAAACAAA
ATGAAAGCAAAAAAGTGTTCTAATTAAATTGTTCTAAAAAGAAGAAAAACACAAAACTGCACAAGTTCTAGCCGCTCTGA
ATAATAATAATAATTGAATTATTAATATTATGAATACATTTGAGTACAACACATAATTAATTGCATAACCCAGACGTAAC
TACGTCATCTTCTTCATTTTCAGACAATCCATGGCCACGACAGGAGATCACTTATACCCCCTCTGTTTCTTTTTACTCGG
CATAGTATTAGGTTTAAATTATCAACATTTGCAATACCAAAAAATACAGGAATGAGGAGTGTGTGAGAGGAGTAATATTC
TCTCTTAGAAGGTGATTAAGAGGGACCATCTTAA-------------------ATTCTCTCTTATTCTGGTCAATACTCT
CTTAGAAGGTAATCAAGAGGGACCATCTTAAAATCTCTCTTATTCTGCTCAAATGAGGAGTGTGTGACTGTGAGAGGAGT
ATAAGCTGTCCCCGTATCTTTTCTGCATGTGGGCTTTAAATGGTCCATATATTT-----------CCAGCAGATTGCTTT
CCAATGCACAGCACAACATTTTGGATTATGCAGCA----GTAAATGCATCGTAAGGTCTCATCCTCCATGGCTGGCTATA
AGAAGAGGCGGCACTCACCTGTTTGGATCTGCGCCTTCTCCTAGCCCCTTCCTTCCTTCCCTCCTCCCTTCATTCCTTCA
TTCCCTGGAGACATGGCGATGGGGGTGCCCAAGCTCATGGTGCCAGGCCTGTGCCTGCTGCTGCTGATCATGCCACTCCT
CTTGCTCCCTGGTAAGCCTT---------CCTGAAAGAAATTCATCCATCTGGAGAAACATGGCACTTCCTCGGCGTTCC
GGTCTTCTTTTCCTGAGCAGATGTTATGCTGTCATCCATCCATACCCCAATTCATTGTGCAAAGAAGAAAAG---GGAAA
TCTGATGATGTTATGCTGT--------CCTTTACCTGCAGGATGTCAAGGGGCGACTTGCAGGGAGCTGAGCAAGACCTA
TACTGCTCCCAACTGCACGACGGACCGATGCGTGGAGCACTGCCAAGTGGAGGGCTTCCGCAACGGGGTGTGCGAGGGGA
ACTACTTCGACCCTTACAAGATACTCTGCTTCTGCAACAAAAACTGCTGAGC----------------------------
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>chr5D_942
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---------------------------------------------------TAAGGTTTCATCATCCATGGCTAGCTATA
AGAAGAGACGGCACTCGCGTGTTTGGATCTGCGCCTTCTCCTAGCCCCTTCCTTCCTTCCTTCCCTCCTC----CCTTCA
TTCCTTGGAGACATGGCGATGGCGGCGCCCAAGCTCAAGGTGCCAGGCCTGTGCCTGCTGCTGCTGATCATGCCACTCCT
CTTGCTCCCTGGTAAGCCTTGCGCCCTTGCCTGAAGGAAATTCATCCATCTGGAGAA-CATGGCACA-------------
----------TCCTGAGCAGATGTTATGCTGTCG---ATCCATACCCCATTTCATTGTGCAAAGAAGAAG--AAAGGAAA
TCTGATGATGTTATGCTGTCCTTTTTTCCTTTACCTGCAGGATGTCAAGGGGCGACTTGCAGGGAGCCGAGCAAGACCTA
TACTGCTCCCAACTGCGCGACCGGCCGATGCGTGGAGCACTGCCAAATGGAGGGCTTCCGCGGCGGGGTGTGCGAGGGGA
ACTACTTCGACCCCTACAAGATAGTCTGCTTCTGCAACAAAAACTGCTGAGCAGCCAGCGATGGCGCATTGCTTCCG---
GGGGTGTAATAAGATGTTTGCCAAGGCGAGCCGTCGTCGATGCGCCATTCACACAAGTTGA-AGCTGTAACAAGTTTCAT
CTGTACCAATTTTATTTTCAACTGCTCGTCTCCCGGTTC--GAGATTGGTCG----------------------------
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>SNPs
--------SS---S--------------------------S--------S-----------------------S------
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---------------S---------------------------S-------------------------------S----
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---------------------------------------------------S--S-----S--------S----------
-------------S-S-----------SS-------------------------S-------------------------
------------------------------------------------------------------------------S-
-----------------S------------S-------------------------------------------------
--------------------------------------------------------S------------S---S-S---S
----------S--S--S-SSSSS-------------S-------------------------------------------
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----------------------------------SSSSSSSSSSSSSSSSSSS-------------------------S-
-------------S--S-----------------------S---------------------------------------
-----------------------S------------------------------SSSSSSSSSSS---------------
----------------------------SSS----SSSS-----------S-----------------------------
----------S--S-----S------------------------------------------------------------
-----------------------------------------------------------S--------------S-----
----------------------------------------------------S-------S--------S----S-----
S--------------------------------S-SSSS----------------S---------------S--------
----------S--------------------S-----------S-----------------S------------------
-SSSS------------S--------------------------------------S-S-S------------S------
S---------------------------------------------------S--------S-------------S-SSS
------------------S--S-----------------------S-S--S--------SSS--------S-S-------
----------------------------------SSS-SSS-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_4020
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AGAAGAGACGCCAATCACCA------------------------------------------------------------
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>reverse_5032
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-----------------------------------------------------------------------AACCATCCC
TGGCTCCCTAT---------------------------------------------------------------------
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