>input_sequence_72198
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---------------------GACGCTAAACCAGAAAAGAAAGATCATCGAGCTTCCAATCCAAGTCCTCAGTCCTCACC
AGTGCAATACGTGCGCGAGCACAAAACCGCACAAATATGTCGACGGTGGAGGAGGAGCTGTCCGAGTGCGAGGTGCTGTG
GCCGGAGACGCGCCACGGCGCTCCGGGGAGCGCGTGGGGGTCGTCGACGGCGGCTCCCAGGGCCTCCAGGGACCACCGGC
AGTGTTCAGCGCCGGTGGACATACCCCGTGGCCGT------------GGGCGTGCTGGCCTGGACGACGACGAGGAGGAG
G---AGGACGGCGCCATGGTGCCGCCGCACCTGATGGTGTCGCGCAGGTGGTCGGAGGGGAAGGCGGCGGCGGCGTTCTC
GCTGCGGTCGGGGCCCGGGCGGGCGCACCGGGACCTCAACAACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTCATCG
AAGGGTGACGTGACGAGGCGGACCCGTCATTTGTGCATATGTGAGAGAAAAGTCAGTCACCACGCGCCTTCTCCACGGTG
TTGGCCAGTCAATTTTGTTCGGCTCGTCTTCTCCGTGTTTGCCAATCAAATTAATTATTAGT-ATCCCTTGGTTGATGCA
AATCAGCCAGTAGTGAGTTAGGATATTTTATTTTTCTTTTCGGAATGGAATAAGCT--------ACGTTTGTACTG----
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>chr3B_1_TraesCS3B01G317500
ATTTGGTAGCAAGTCGTCATTGACTTCCAAAACTATACACGAAG----TACCAACGTCCAACGTTAAAATAACGGACGGA
TTGGGCATTCGGGCTTA---CGCGAGCAAA----TCATGCGACGCGTTGTGCCCAGTTCCTGCCCTTTTTTTTTCCTGGA
TCAGACACGCGTCGAGCGGAACGTACGTGGATGCTTCCCATCCTTTAGCTT-GCCTGCAGTGCACACGGCAATAACGAAA
CCAATGATCCACTCGACACTCGTAATGGTACGACTGCAACCGGTCCGATGGCGCAG---CAGCAGTGCACACGCGTCCCC
GAAATGATTAGCAAAGCGCAGGCCGATGGATTCCGTTTGCTTCCCAGCC-GAGGGCCAGAGATTACACGAGTAGGTCCGT
GAGAGAGTCGCAGGGGTGCAGGGGACGCGTGTGATGCAGTCGAGGATTAATTAATCTGGATCAAGCCTGGCGTAATCTTG
ACACGCTTTAAAAATGGGATCTCGCGCTCGTGTATTCGGCTAGTCTCGTCAGAGCTGCTGCGCGCGGTGCTTTAGATAAT
GATAGTA-------------------------------------------------------------------------
-------------------------------------------------------------------------------T
AACTTTCAAAGGATTTCACCGCCTTATTTGTAAATCTTATATTCCCTATCTGAAGGTGTATGTGGCACCTTCGTCACCTG
CCACCAATGACCGGATTCATGATTAGTAGC--------------------------------------------------
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-------------------------------------------------------------------------------A
AACGGAAGAAAGAAAATAGAGGGAGAAACTGATCGCTCGCTCTTGTATATACGACCAAAAG-TAGATTGCAGCTTCTTCT
TTTTAATAAATCTGAAAAAACAGATTGCAGCTTCATGTCGACCAACCTTATTTCTATGTTTTTTTTAGAAACAACTTTAT
TTCTATGTGTGTGAGCCGGTGGATTGGATCAGCCTTTATTTGACCTGGCCCGGTAGGCCCGCGATCCGGTTCCGGCCTCA
TCCTCCACGCGGCTGCCG---CCGTACGTGGGAAGCTACACCTACACGCACGGCATGGTGCCACACCGCCTATATATACG
CGCTTCCCCGTCACAGGATAGGACGCTAAACCAGAAAAGAAAGATCATCGAGCTTCCAATCCAAGTCCTCAGTCCTCACC
AGTGCAATACGTGCGCGAGCACAAAACCGCACAAATATGTCGACGGTGGAGGAGGAGCTGTCCGAGTGCGAGGTGCTGTG
GCCGGAGACGCGCCACGGCGCTCCGGGGAGCGCGTGGGGGTCGTCGACGGCGGCTCCCAGGGCCTCCAGGGACCACCGGC
AGTGTTCAGCGCCGGTGGACATACCCCGTGGCCGT------------GGGCGTGCTGGCCTGGACGACGACGAGGAGGAG
G---AGGACGGCGCCATGGTGCCGCCGCACCTGATGGTGTCGCGCAGGTGGTCGGAGGGGAAGGCGGCGGCGGCGTTCTC
GCTGCGGTCGGGGCCCGGGCGGGCGCACCGGGACCTCAACAACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTCATCG
AAGGGTGACGTGACGAGGCGGACCCGTCATTTGTGCATATGTGAGAGAAAAGTCAGTCACCACGCGCCTTCTCCACGGTG
TTGGCCAGTCAATTTTGTTCGGCTCGTCTTCTCCGTGTTTGCCAATCAAATTAATTATTAGT-ATCCCTTGGTTGATGCA
AATCAGCCAGTAGTGAGTTAGGATATTTTATTTTTCTTTTCGGAATGGAATAAGCT--------ACGTTTGTACTGC---
--------------------------------------------------------------------------------
----------------------------------------------------------TATGAGATTCTTCAGATTGAAC
CGCGTCCATTTTTTCATCCTTGGTCCGGAGAGGTTTCTGTTGCTGTCGCATGTCGGCACGGGCTTTTGATCAATCCTGTG
GAAAAAATG-TACTGTTTGACAAAACAGAGCAAGCCTGGTAGGTCGAAGTACCGAGCAAAAAACGTGCGATTTAGCAGGT
GAACAATTCAAA--------------AATGCTAAAGAAAACATCAAACGAGGCTTCAAGGAAACGGGGAACAGTTTGTAT
GGAATGAGCACCTATCATCTACTAGACGGTA-------------------------------------------------
------------------------------------------------------------------------------AC
GGTAGCACGAAAAGGTCCATGACGTGAAGGAAAAATCTTTATT-----------------CAACTATTTCCAAGGTTACT
GCTCTGATACAAAGTGAAGCATT---------------------------------TCTGCGGTATGATGGTTTTACCGT
TAATACTCTTGGTTATTGATGGCACTCATCTATCGCGGTAGGACAAA-TAGCTGCATACAGGATGACATCCTCTTTTGTG
AAGGAGCTCGGCAAGCAAACTACTGTAGAAGGAAACGAGCATGTGGAGTTTCAGGCCCAGAAACATCATC----TGAAAG
CCGAAAGA-CAAAGTGCAGAAATCACAGTGCCCTCATCGCCTTGATCCAGTCAACGTCTAATCTAAAATCGCCTGGCCCA
GTCTTAGCACCAGGAATGCCGCCTTCTGCATTCAACGAGAGAGACATTCCCACGACGCGAGAAGGATTCATTTCCATGTT
CGCTTCGATCACATTTCCTTTCCATGTAGGTAAGTAGCTATCGAGAGGGATCTGGATGGAAAAACAGAGTGGTGTTTTA-
TCATGAACAAACACATAATTGC----------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CAGTTGCGACCAGAAAATTTACCTTCAGGATTCGCCAGCTACCATGAGGCACGTACACG
AAAGCCTGCCACGAGTTATCTTCCTCTTGTCCAGGTGAATTCACCCAGTTCTCTGTGTATATCTGTATACAAATTCAGAT
TACGGAACATTATGTTGACTGGACATCAATTATTCATTATCTTTGCTAGTCGGAT
>chr3D_1
ATTTGGTAGCAAGTCGTCATTGACTTCCAAAACTATACACGAAG----TACCAACGTCCAACGAT-AAATAACGGACGGA
TTGGGCATTCGGCC-TA---CGCGAGCAAA----TCCTGGGA--------------------------------------
----------------------------------TTCCCATCCTTTAGCTTTGCCTGCAGTGCACACGGCAATGACGAAA
CCAATGATCG------CACTCGTAATGGTGTGACTGCAACCGGTCCGATGGCGCAGCAGCAGCAGTACACACGCGTCCTC
GAAATGATTAGCAAAGCGCAGGCCGATGGATTCCGTTTGCTTCCAAGCCAGAGGACCAAAGGCTACACGAGTAGGTCCGT
GAGAGCGTCGC--------AGGGGACGCGTGTGACGCGGTCGAGGATTAATTAATCTGGATCAAGCCTGGCGTAATCTTG
ACGTGCTTTAAAAATGGGATCTCGCGCTCGTGTATTCGGCGAGTCTCGTCAGAGCTGCTGCGCGCCGTGCTTTAGATAAT
GA---TA-------------------------------------------------------------------------
-------------------------------------------------------------------------------T
AACTTTCAAAGAATTTCACCACCTTGTTTGTAAATCTTATATTCTCTATCTGAAGGTGTATGTGGCACCTTGGTCACCTG
CCACCAATGATCGGATCCATGATTAGTAGTACTCCCACCATCTTAAATGTAAGTTTTTCTAGAGATTTTAACAAGTGATT
ATATACGAAATAAAATGAGTGAATCTAAATTCTAAATTGGCAAGTTTATCGTCATATCGGCTGATTTATCGGCCGAATTA
TCTTATCGGTCAGACACCGGTAAGCAATGAATCGGCCGATTTATCGAATATCGGAAAATATCTTAAACAGTGATCTACAT
ACATTCGTATGTTGTAGTTCATTTAAAATGTCTAAAAGGACCCGTATTTAAGAACGGAGGGAGTAGTACATTAAGTACCA
AATGGAAGAAAGAAAATAGAGGGAGAAACTGATCGCTCGCGCTTGTATATATACGACCAAAATAGATTGCAGCTTCTTCC
TTTA---AAATCTGAAAAAACAGATTGCAGCTTCATGTCGACCAACTTTATTTCTATTTTTTTTTAGTGGT--ACTTTAT
TTC---------------------------------TATTTGACCTGGCTCGGTAGGCCCGCGATCCGGTTCCGGCCTCA
TCCTCCACGCGGCTGCCGCCGCCGTACGTGGGAAGCTACACCTACACACACGGCATGGTGCCACACCGCCTATATATACG
CGCTTCCCCGTCACAGGATAGACCAA-------------AAAGATCACCGAGCTTCCAATCCAATTCCTCCCCAGTGTAA
-----AATACCTGCGCGAGCACAAAACCGCACAGATATGTCGACGGTGGAGGAGGAGCTGTCCGAGTGCGAGGTGCTGTG
GCCGGAGACGCGCCACGGCGCTCCGGGGAGCGCGTGGGGGTCATCGACGGCGGCTCCCAGGGCCTCCAGGGACCACCGGC
AGTGCTCCGCGCCGGTGGACATTCCCAGGGCCGCGCACCTGCCCGGCGGGCGCGCTGGCCTGGACGACGACGAGG-----
----AGGACGGCGCCATGGTGCCGCCGCACCTGATGGTGTCGCGAAGGTGGTCGGAGGGGAAGGCGGCGGCGGCGTTCTC
GCTGCGGTCCGGGCCCGGGCGGGCGCACCGGGACCTCAACAACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTCATCG
AAGGG-----TGACGAGGCGGACCCGTCATTTGTGCATATG--AGAGAAAAGTCAGTCACCACGCGTTTTCTCGACGGTG
TTGGCCAGTCAATTTTGTTCGGCTCATCTTCCCCGTCGTCACCAATCAAATTAATTAGTC----TCCCTTGGTTGATGCA
AATCAGCCAGTAGTGAGTTAGGATTTA-----TTTTTTTTCGGAATGAAATAAGTAGTGATTTCACGTTTGTACTAC---
--------------------------------------------------------------------------------
-------------------------------------------------------GAGTATGAGATTCTTCAGATTAAAC
CG--TCCATTTTAACATCCTT-GTCCGGAGAAGTTTCTGTTGCCGTCGCATGTCGGCACGGGCTTTTGATCAATCCTGTG
GAAATTTTTTTACTGTTTGAC--AACAGAGCAAGCCTGATAGGTCGAAGTACCGAGCAAAAAACGTGCGATTTAGCAGGT
GAACAATTCAAA--------------AATGCTAAAGAAAACATC-AACTAGGCTTCACGGAAACAGGCAACAGTTTGTAC
AGAATGAGCATCTATCATCTACTCCCTCCGTTCCTAAATATAAGTCTTATAGAGATTTCACTATGCACCACACTAGGATG
TTTACACATTTTGGTCCGTATGTAGTCCATAGTGAAATCTCTACGAAGACTTATACTATTTCGGAACGGAGGGAGTAGAC
GGTAGCACGAAAAGGTCCATGACATGAAGGAAAAATCTTTATTCAATGGCGCTGAACCGACAACTATTTCCAAGGTTACT
GCTCTGATACAAAGTGAAGCATTTCATGC---TACAATGGATGCAGGAGTCGACAATCTGCGGTGTGATGGTTTTACCGG
TAGTACTCTTCGTTATTGACGACACTCATCTATCGCCGTAGGACAAAGTAGCTGCATACAGGATGAGATTCTCTTTTGTG
AAGGAGGTTGGCAAGCAAACTG-----GAAGGAAAACGC---TTGGAATTTTAGGCCCAGAAACATCTATCCTGTGAAAG
CCGAAAGA-CAAAATGCGCAAATCACAGTGACCTCATCGCCTTGATCCAATCAACGTCTAATCTAAAATCGCCTGGCCCA
GTCTTAGCACCAGGAACGCCGCCTTCTGCATTTAACGAGAGAGACATTCCCACGACGCGAGAAGGATTCATTTCCATGTT
CGCTTCGATCACATTTCCTTTCCATGTAGGTAAGTAGCTATCGAGAGGGATCTGGATGGGAAAACAGAGTGGTGTTTTA-
TCATGAACAAACACATAATTGC----------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CAGTTGCGACAAGAGAAATTACCTTCAGGATTCGCCAGCTACCATGAGGCACGCACACG
AAAGCCTGCCACGAGTTATCTTCCTCTTGTCCAGGTGAATTTACCCAGTTCTCTGTGTATATCTGCACAAAAATTCAGAT
TATGGAACATTATATTGACTGGACATCAATAGTTCATTATTTTTGCTAG------
>chr3A_1
ATTTGGTAGCAAGTCGTCATTGACTTACAAAACCATACACGAAGTACATACCAACGTCCAACGAT--AATAACGGACGGA
TCGGGCATTCGGGCTTATTACGCGAGCAAATCATTCATGCGACGCGTTGTGCCCAGTTTCTGCCTTTCTTTCCCTGTACA
GC---CACGCGTCGAGCGGAACGTGCGTGGATGATTCCCATCCATTACCTT-GCCTGCAGTGCACACGGCAATGACGAAA
CCAATGATCG------CACT--------------------CGGTCCCATGGAGCAGCAGCAGCAGCACACACGCGTCCTC
GAAATGATTTGCAAAGCGCAGGCCAGTGGATTCCGTTTGCTTCCCAGCGAAAGGACCAAAGGCTACACGAGTAGGTCCGT
GAGAGCGTCGCAGGGGCGCGGGGGACGCGTGTGACGCGGTCGAGGATTGATTAATCTGGATCAAGCCTGGCGTAATCTTG
CCACACTTTAAAAATGGGATCTCGCGCTCGTGTATTCGGCGAGCCTCGTCAGAGCTGCTGCTGCGGTCGAGGATCTATAA
TGCTAAATTTATAAAATAAGAAAAATAAAGTCATGGCACATCTAATGTTGTTGATTTCACATTCTAAATGATTGTATTTT
TTTCTATAAACTTGATCAAAGTTTACGAGGTTTGACTTCAGACAAATCTTATATGCGAACTAAAAAGGACCGGAGGGAGT
AACTTTCAAAGGATTTTACCACCTTGTTTGTA----------------------GGTGTATGTGACG-CTTCGTCACCTG
CCACCAATGATCGGATTCATGATTAGTACTACTAGTACATTAATAAGTACTCCATCCGTTCGAAATTACTCGGTTGA---
-----------AAAATGAATGTATTTATGTATTTTAATTATAGA------------------------------------
---------------------------------------------------------------------------TACAT
CCATTTTTATGATAAGTAATTCCA----------------------------AACGGAGGAAGTAGTACCA--------A
AATGGAAGAAAGAAAATAGTGGGAGCAACTGATCGCTCGCGCTTGTATATACGA------------TTGCAACTTTTTAA
AAAA---ATATCTGAAAAAACAGATTGCAGCTTCATGTCGACCAACTTTATTTCTAT-----------------------
------GTGTGTGAGCCGGTGGATTGGATCAGCCTTTATTTGACCTGGCCCGGTAGGCCCGCGATCCGGCTCCGGCCTCA
TCCTCCACGCGGCTGCCG---CCGTACGTGGGAAGCTACACCTACACACACGGCATGGTGCCACACCGCCTATATATACG
CGCTTCCCCGTCACAGGATAGGACGCTAAAGCAGAAAAGAAAGATCATCGAGCTTCCAATCCAGGTCTTCACTCATCACC
GGTGCAATACGTGCGCGAGTACAAAACCGCACAGACATGTCGACGGTGGAGGAGGAGCTGTCCGAGTGCGAGGTGCTGTG
GCCGGAGACGCGCCACGGCGCTCCGGGGAGCGCGTGGGGGCCATCGACGGCGGCTCCCAGGGCCTCCAGGGCCCGCCGGC
AGTGCTCTGCGCCGGTGGACATTCCCAGGGCCGCGCACCTGTCCGGCGGGCGCGCTGGCCTGGACGACGACGAGGAGGAG
GAGGAGGACGGCGCCATGGTGCCGCCGCACCTGATGGTGTCGCGCAGGTGGTCGGAGGGGAAGGCGGCGGCGGCCTTCTC
GCTGCGGTCCGGGCCCGGGCGCGCGCACCGGGACCTCAACCACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTCATCG
AAGGGTGACG-GACGAGGCGGACCCGTCATCTGTGCATATGTGCGAGAAAAGTCAGTCACCACGCGTCTTCCCGACGGTG
TTGGCCGGTCAATTTTGTTCGGCTCATCTTCCCCGTGGTTGCCAATCAAATTAATTAATTTGCATCCGTTGGTTGATGCA
AATCGGCCAGTAGTGAGTTAGGAT--------TTTTTTTTTGGAATGGAATAGTAT--------ACATTTTTCTGAATAA
TCTACGACTGTACTACTCCCTCCGTCCGAAAATACTTGTTATCAAAATGAACAAAAAACGATGTATTTAGAACTAAAATA
CATTTAGATACATCCTCTTTTATTCATTTTAATGAAAAGTATTTCCAGACAAAGGGAGTATGAGATTCTTCAGATTGAAC
CGCGTCCATTTTTTCATCCTTAGTCCGGAGAAGTTTCTGTTGCTGTGGCATGTCGGCACGGGCTTTTCAACA--------
---------------TTTGACCAAACAGGGCAAGCCTGATACGTTGAAGTAGCGAGCAAAAAACGTGCGATTTAGCAGGT
GGACAATTCAAAAGGTCCCATTCAAAAATGCTAAAAAAAACATC-AACTAGGCTTCACAGAAACTGGCAACAGTTTATGC
AGAACGTAGCACCA------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAAATTCCATGGCCTGAAGAAAAAATCTTTATTCAATGGCCCTGAAAAGATAACTATTTCCAAGGTTACT
GCTCTGATACAAAGTGAAACATTTCATGCATCTACAATGGATGCTGGATTTGTCAATCTGTGGTATGACGGTTTTACCGT
T----------GTTATTGATGACACTCATCTATCGCCGTAGGACAAAGAAGCTGCATAGAGAATGAGATTCTCTTTTGTT
AAGGAGCTCAGCAATCAAACTG-----GAAGGAAAATGCTCGTTGGAATTTTAGGCC--------TCTATCTTGTGAAAG
CCGGAAGAACAAACTGCGGGAATCACAGGGACCTCATCGCCTTGATCCAATCAACGTCTAATCTAAAATCGCCTGGCCCA
GTCTTAGCACCAGGAACGCCGCCTTCTGCATTTAACGAGAGAGACATTCCCACGACGCGAGAAGGATTCATTTCCATGTT
CGCTTCGATCACGTTTCCTTTCCATGTAGGTAAATAGCTATCGAGAGGGATCTGGATGGAAAAACAGAGTGGTGTTTTAA
TCATGAACAAACATATACTCCCTCCATTTCTAAATATAAGCCTTTTTACAGATTTCAATACGGACTACATTCGGATGTAT
ATAGACATATTTTAGAGTGTACATTCACTCATTTTGCTCTGTATGTAGTCCGTATTGAAATCTCTAAAAGGGCTCATATT
TAGAAACGGAGGGAGTAATTGCAGTTGTGACTAGAGAAATTACCTTCAAGATCCGCCAGCTACCCTGAGGTACGTACACG
AAAGCCTGCCACGAGTTATCTTCCTCTTGTCCAGGTGAATTCACCCAGTTCTCTGTGTATATCTGTATACAAATATGGAG
-------CATTATATTGACTGGACATCAATTATTCATTATTTTTGCCAGTCG---
>SNPs
---------------------------------------------------------------S-S--------------
----------------------------------------------------------S-----S--S---SSSSS-SS-
S-SSS-------------------S--------S---------------------------------------S------
---------SSSSSSS-------------SS-----------------------------------S-----------S-
------------------------------------------------------S---S--SS-----------------
-----S----------S-----------------S--S------------------------------------------
----------------------------------------S---------------------------------------
--SSS---------------------------------------------------------------------------
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--------------------S----S------------------S-----------------------------------
----------S------------------S--------------------------------------------------
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--S-------------------------------------S-------------SSSS--S------------------S
---SSSS---------------------------------------S----------S-------SSSSSSSS-------
---SSS--------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
------------------------------S----------------------------------------S--S-----
S--------------------------------S----------------------------------------------
------------------------------------------S-------------------------------------
----S--S--------------S---S-S-S-SSS-----------------S---------------------------
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---------S----------------------------------------------------------------------
------------------------------------------------------------------S------S------
-------------------------S-----S-----S-------------------S-SSS------------------
------------------------S-SSSSSS---S------------------S--------------------S----
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---------------------S---------S------------------------------------------------
----SSS-S------------S----------------S-----------------------------------------
--------------------------------------------S---S--------S------S--S-----------S
S---------S------------SSSSSSSS-------------------------------------------------
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-----------------------S--------------------------------------------------------
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--S-------S----------S--------------S-----------------------------S--S----------
---------------------SSSSSS--------SSSSSSSS----S---S---------------SSS----------
-------------S---S------------S------------------S------------------------------
----------------S---------------S-----------------------------------------------
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-------------------------------S---S--S-----------------------------------------
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--S----------S--------------------------S-----------SSS
>forward_1161
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---------------------GGAGAAACTGATCGCTCGCT---------------------------------------
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>reverse_3001
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----------------------------------------ATGTGGAGTTTCAGGCCCAG--------------------
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