>input_sequence_72189
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--------------------------------------------------------------ATGTACCACCATAACAAT
GGCGAGGTTGCCAGCTTCCACTTCCTCCCGCCCCCAAACCCTTCCTCCTCCTTCACCACCCACCACCACATGAACATGGC
CTTGCCACCTCAAGCCTACTTCCCGCCCACCTTCGATCCTGCCGCTCTACTTGCCGGCGACGACGACGTGGCAGCAGCCT
TTGAGTTTGACGCTATCCTACTC---GAAGAAGCGGCTCACCTCGCCGGCGGCAATGGCTCGCCCAGCTCGGGCTCCGAC
GCCGGTGGCGGGAACTACCTCCAGGTGGGCGGTCCTGGCGCTGGATTTGGCGCCGCAGAGGAGGAGAGGCGGCGGCGGCG
AATGGTCTCGAACCGGGAGTCGGCGCGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTGAGCGAGCTGTGGGCGCAGGTCA
CCCACCTCCGCGGAGCCAACCGCCGCCTCCTCGACGAGCTCAACCGCGCATTGCGCGGGTGCGCCGACGCCCGCCGCGAG
AGCGCCCAGCTCAGGGACGAGAAGGCCAAACTGAATGAGAAGCTCGAGCAGCTGTTGCAGCAATCGGCACCGGAGAAGAA
GGCCGCCTCCTCCTCCCCTCCGGCCTCGAGCAATCACAGTGGCCGCTCCTCGGAGCCATGCAAGAGCAGCACAGCTGCTG
CAGCTTCTATCGAATGA---------------------------------------------------------------
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>chr7B_1_TraesCS7B01G086100
GAAAGCAAGGTATCACAAGGATAATATGTAAAAGCAACAGGCGGAGTTTGGCATGGACAAACATGGAGGGATTAAATTCA
CCTGCCCGACGAGACTGACTTGGGTCAAGTCATGCATCCATGCAAATATTCTCTTGGTAACTAATAAGCCAAGATATACA
CAGCGCACAGGTCTAGTGCCCTTAGATGC-------TCACTAACCTCGCCCATACTTATGGATGACACAAAGAACAATCT
AGGAGAGTAACACCTATGTAGATGCACTTAGGGCATCTTCAACGGTAACCCGCAAATTTCCTTCTGCATCCGTCCATGAA
C-----AAATAGATGTGGAAGGATACCATCCAATCGCAGTCACATACATTTCGAACCGCATTTCAACTAACAGACTGAAA
TTCACGCAAACCGATTGATATTCATCGAAATTTGGATTAAATATAGCACAAATGATCCATACGTAGCATGCGAATAAGTC
TAGTGCAACAATGTCTCAAATTTGACTACATTAACCAGATGTCCAACAAATTTTTCGTCAATGGATCATGTCGTCCCACA
CATACTGCTCATTTAGCTTTATCCAACA--GTGTGTAGGTAAATACCCAGGCGCCTCCATATCCGCCCCATATTTGGGT-
TTGATATGAGGAGTGCCGGTCAGCCCGGCGTTTGAGACCCGTTTGAGGCGTCTGTCTAGGTTAAAATTTTATGATTAGGT
CGTCCGCTCGAGC-------------GTTTAAGGCGGGTTTGGAGTGCCCGGCCGTAGATGTTTAAGCTACCTACCGAAC
TCTAGCTCCATATAAGAT--------------------------------------------------------------
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-------TCTCAGGCTACAAAAAAAAGGATGACAT-----GATACAGCCCAACATGAGAGAGAAGAGAAGGCATTGTTTC
TCTCTTGGGCAACAAAGGCACTGTGCCACACTATAAAAGGCCATGGCTTCTTCTCCTCGTCTGCCATAGCCAACAAACAA
GATCTACTAGTGCTACTACACTAGAAGCTGCCATAAGCAAAGAAGAGACAAGAAACAGGACCATGTACCACCATAACAAT
GGCGAGGTTGCCAGCTTCCACTTCCTCCCGCCCCCAAACCCTTCCTCCTCCTTCACCACCCACCACCACATGAACATGGC
CTTGCCACCTCAAGCCTACTTCCCGCCCACCTTCGATCCTGCCGCTCTACTTGCCGGCGACGACGACGTGGCAGCAGCCT
TTGAGTTTGACGCTATCCTACTC---GAAGAAGCGGCTCACCTCGCCGGCGGCAATGGCTCGCCCAGCTCGGGCTCCGAC
GCCGGTGGCGGGAACTACCTCCAGGTGGGCGGTCCTGGCGCTGGATTTGGCGCCGCAGAGGAGGAGAGGCGGCGGCGGCG
AATGGTCTCGAACCGGGAGTCGGCGCGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTGAGCGAGCTGTGGGCGCAGGTCA
CCCACCTCCGCGGAGCCAACCGCCGCCTCCTCGACGAGCTCAACCGCGCATTGCGCGGGTGCGCCGACGCCCGCCGCGAG
AGCGCCCAGCTCAGGGACGAGAAGGCCAAACTGAATGAGAAGCTCGAGCAGCTGTTGCAGCAATCGGCACCGGAGAAGAA
GGCCGCCTCCTCCTCCCCTCCGGCCTCGAGCAATCACAGTGGCCGCTCCTCGGAGCCATGCAAGAGCAGCACAGCTGCTG
CAGCTTCTATCGAATGAAATGTTGTTTTTACTCATATATATTATCCACCCAAATTTTTAGAGGATAACTACTACTGTATC
AATAATAAGATTATAAGAGCATGTGTTATTGAATAATGATAAATGA-TTATTTAATGGCGATGGCTGGGGTCATGCATGC
ATGCACCCTGTAATCAGTTTCCCTATCAGGAATATGTTTTGTGTAACAGGTTTTGGTACTTATCCTGTGTCGATAAATTA
ACATGGATAGGATGTAGTG-------------------------------------------------------------
-----------------------------------------------------CTATATATTTGCAAGTTGCAAAGCTTG
TGATGAATGAAACCAATACAACAGTAGCAAGACCAAAGTATGAGAGTGAGAGATCAAGGAAGGATCAAAAACCGGTGAGA
ACGACAAGTGTTTAGCTTTCCATAATGCGGGTGAACTACAAGGGGAAAATATATAGTGCATTCCACTTTTCTTTATGAAA
TTTAATGATTATTATTTTGAAATTTGCCTTCCACTTGATGATGTCATGAGTTCAACTTGTATGTAGTGCTTTGTGATTGC
TAATGTATCGTCTACTTCGTTGATGCCGACTTACGTACCTACCAGCTGCTTTTCTTGGGCAGCTAAGTCGCCCATAGCAT
GCTATAG-TTTTGCAATGTTGTATCGAACAAGGTTCGACATATGTATCTAGCAATTTTGGCATATGAATGTAGCATCAA-
----GATCTCACAACATATCCTATTCACTGAGATGCTTGTGGG-ATATGTTCCCAAGAATCTTGAGCAAAAGCACAGTAA
CATGTGCATGCATGCCGCAAAACAAATCTATGCATGCATGCTTTTTCACAA--TATATAAATTCCATTGCCATGTGCATG
CATAGGTGTGAATGTTTTGTTAATCCAAATGGACAATGAGCTTCAGGAGTTGGTATTGCAGCATGGAAACCTTCAAGCAC
AGGACAAGTGGATTTGCCAAGGGAAAATGCCTAAAAACTAGGAGGAGGCATATTGTCTATTCAAATGGTTGTGGAAAAAA
AAAATTGGCTACTCCTGGATG
>chr7A_1
GAAAGCAAGGTATCACAAGGAGAATATGTAAAAGCAACAGGCAGAGTTTGGCATGGACAAACATGG-GGGATTAAATTCA
CCTGCCCGAAGAGACTGACTTGGGTCAAGTCATGCATCCATGCAAATATTCTCTTGGTAACTAATAAGCCAAGATATACA
CAGCGCACAGGTCTAGTGCACTTAGATGCTCACTAGTCACTAACCTCGCCCATACTTATGGATGACACCGGGAACAATCT
AGGAGAGTAACGCCTATGTAGATGCACTTAGGGCATCTTCAACGATAACCTGCAAATTTTCTACCGCATCCAGGACCAGT
CCACAGACATGGGTGTAGGAGGACGCCATCCAACCGCAGTCGCATACATTTCGAACCGCATTTTAACTAACCGAACAAAA
TTCACACAAACCGGCCGATATTCATCGAAGTTTGGATAAAATGAAGCACAAATCATTCATATGTAGCATGCAAATAAGTC
TAGTATAACAATGTCTTAAATTTGACTACATTAACCAGATGT---ACAAGTTTTTCATCAACGGATCATGTCGTCGCATA
CATACTGCCCATTCAGTTTCATCAAACAGTGTGTGTACGTAAATAGCCGGGCGTCCCCATATCCGCCCCATATTTTGGGC
TGGATATGAGGGATGTCTGTCAGTCCGCG----------CATTTGAAGCGCCCGCCAGGGTCAAAATTTCCTGACCTGCC
AGTGAC--CGGGC-------------GTTTGAGGCGGGTTTGGACTGCCCGGACTCTAAG-----------CTACCGAAC
TCTAGCTCCATATAAGATCTCAGCATAGTTTTACCTTAATCCAATATATTCTTAGTTAAAATATGTCCAAACA-TAATGA
ATTTTGTCTGGTTTATATGAATATCATCCGGTTTCAATGAAGTTTGCCCGACTTGTCTAAAATTTTGAATTGTATGCTGG
CAGCGTTGGATGCCCGTATCCCGCATCCACCCATATCCCGCATCTGTGTCCGCGAACTAATAACTCTATCCGTGGACGGA
TGCGGGAAAGAATTTGCAGGTCAATGTTGAAGATGCACTAAGCTTGCCCATATTTGTAAGCTACCAAACTCTAGCTCGAT
ATAAGATTCTCAGGCTACAAAAAAAAGGATAATAT-----GA-------------GAGAGAGAAGAGAAACCATTGATTC
TCTCTTGGGCAACAAAGCCACTGTGCCACACTATAAAAGGCCATGGCTTCTTCTCCTCGTCTGCCATAGCCAAGAAACAA
GATCTACTAGTGCTACTACACTAGAAGCTGCCATAAGCAAAGAAGAGACAATAAACAGGACCATGTACCACCATAACAAT
GGCGAGCTTGCCAGCTTCCACTTCCTCCCGCCCCCAAACCCTTCCTCCTCCTTCACCACTCACCACCACATGAACATGGC
CTTGCCCCCTCAAGCCTACTTCCCGCCCTCCTTTGATCCTGCCGCTCTACTCGCCGACGTCGACGACGTGGCAGCAGCCT
TTGAGTTGGACGCTATCCTACTAGCAGAAGAAGCGGCTCACCTCGCCGGCGGCAATGGCTCGCCCAGCTCGGGCTCCGAC
GCCGGTGGCGGAAGCTACCTCCAGGTGGGCGGTGCTGGCGCTGGAGTTGGCGCCGCGGAGGAGGAGAGGAGGCGGCGGCG
AATGGTCTCGAACCGGGAGTCCGCGCGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTGAGCGAGCTGTGGGCGCAGGTCA
CGCACCTCCGCGGAGCCAACCGCCGCCTCCTCGACGAGCTCAACCGCGCATTGTGCGAGTGTGCCGGCGCTCGCCGCGAG
AGCGCCCAGCTCAGGGACGAGAAGGCCAAACTGAATGAGAAGCTCGAGCAGCTGCTACAGCAATCGGCACCGGAGAAGAA
GGCC---------------------TCGAGCAATCACAGTGGCTGCTCCTCGGAGCCATGCAAGAACAGCACAGCTGCTG
CAGCTTCTATCGAATGAAATGTTGTTTTTACTC----ATATTATCCACCCAAATTTTTAGAGGATAACTACTACTGTATC
AATAATAAGATTATAAGAGCATGTGTTACTAAGCAATGATAAATAATT-ATTTAATGGCGATAGCTGGGGTCATGCATGC
ATGCACCCTGCAACCAGTTTCCCTATCAGGAATATGTTTTGTGTAACAGATTTTGGTACTTATCCTGTGTTGATAAATTA
ACATGGATAGGAGGATGTAGTGCTATATATTCGAGATAGCCGACCACCCATTTAGTAGTTATCTGAGAAAAAATTAAAAC
CGGTAGTTTTTTGGAACCCTAGGCTGTAAAGTAGTAGTTTTATGCTATTTACTCTATATATTTGCAAGTTGCAAAGCTTG
TGATGAATGAAACCAATACAACAGTAGCAAGACCAAAGTATGAGAGTGAGAGATCAAGGAAGGATCAAAGACCGGTGAGG
ACGACAAGTGTTTGGCTTTCCATAATGCGGGTGGACTACAAGGGAAAAA-ATATAGTGCATTCCACCCTTTTTAACGAAA
TTTAATGATTATAATTTTGAACTTTTTCCTCCACTTGATGATGTCATGAGCTCAACTTGTATGTAATGCTTTGTGATTGC
TAATGTATCGTCTACTTCGTTGATGCCGACTTACCTACCTACCAGCTGCTTTTCTTTGGCAGCTAAGTCGCGC--AGCAT
GCTATAGTTTTTGCAATGTTGTATCGAACAAGGTTCGACATATGTATCTAACAATTTTGGCATATGATTGTAGCATCAAT
GCAAGATCTAACAACATATCCTATTCACTGAGATGCTTGTGGG-ATATGTTCCCAAGAATCTTGAGCAAAAGCACAGTAA
CATGTGCATGCATGCCCCAAAACAAATCTACGCATGCATGCTTTTCACAATAGTATATAAATTCCATTGCCACGTGCATA
AGC----GTGAATGTTTTGTTAATCGAAACGGAGAATGAACTTCAGGAGTTGGTATTACAGCATGGAAACCCTCAAGCAC
AGGACAAATGGATTTGCCAAGGGAAAA-----------------------------------------------------
---------------------
>chr7D_206
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----------------------------------------------------TACTTATGGATGACACCGAGAACAATCT
AGGAGAGTAACGCCTATGTAGATGCACTTAGGGCATCTTCAACGGTAACCTGTAAATTTTCTACCGCATCCAGTACCTGT
CCACGGATATGGATGTGGGAGGACACCATCCAACCGCAGCCGCATACATTTCGAACCGCATTTTAACTAATTGAACAAAA
TTCACGCAAACCGGCCGATATTCATCAAAGTTTGGATAAAAAGAAGCACAAATCATCTATACGTAGCATACAAATAAGTC
TAGTATAACAATGTCTCAAATTTGACTACATTAGCCAGATGTACAACAAGTTTTTCATCAACGGATCATGTCGTCCCATA
CATACTGCCCATTCAATTTCAT-AAACAGTGTGTGTACGTAAATAGCCGGGCACCCCCATATCCGCCCCATATTTGA-GC
TGGATATGAGGGATGTCTGTCAGTCCGCG----------CGTTTGAGGCGTCCGTCAGGGTCAAAATTTCGTGACCTGCC
AGTGAC--CGGGCCGTCTATCTGGACGTTTGAGGCAGGTTTGGGGTGCCCCAACTCTAAG-----------CTACCGAAC
TCTAGCTCCATATAAGATCTCAACATAGTTTTACCTTAATCCAGTATATTTTTAGTTAAAATATGTCCAAAATGTAATGA
ATTTTGTATGGTTTATATGAATATCATCCGGTTTCAATGAAGTTTGTCCGGTTTGTCTAAAATTTTGAATTGTATGCTGG
CAGTGTTGGATGCCCGTATCCCGCATCC-----------------GTGTCCGCGAACTGATAACTCTATCCGTGGACGGA
TGCGGGAGAGAATTTGCATGTCAGCGTTGAAGATGCACTAACCTTGCCCATATTTGTAAGCTACCAAACTCTAGCTTGAT
ATAAGATTCTCAGGCTACAAAAAAAAGATACTATACGAGAGA-------------GAGAGAGAAGAGAAACCATTGATTC
TCTCTTGGGCAACAAAGCCACTGTGCCACACTATAAAAGGCCACGGCTTCTTCTCCTCATCTGCCATAGCCAACAAACAA
GATCTACTAGTGCTACTACACTAGAAGCTGCTATAAGCAAAGAAGAGACAAGAAACAGGACCATGTACCACCATAACAGT
GGCGAGGTTGCCAGCTTCCACTTCCTCCCGCCCCCAAACCCTTCCTCCTCCTTCACCACCCACCACCACATGAACATGGC
CTTGCCCCCTCAAGCCTACTTCCCGCCCTCCTTCGATCCTGCCGCTCTACTCGCCGGTGACGACGACGTGGCAGCAGCCT
TTGAGTTTGACACCATCCTACTG---GAAGAAGCGGCTCACCTCGCCGGCGGCAATGGCTCGCCCAGCTCGGGCTCCGAC
GCCGGTGGCGGAAACTACTGCCAGGTGGGCGGTGCTGGCACTGCAGTTGGCGCCGCGGAGGAGGAGAGGAGGCGGCGGCG
AATGGTCTCGAACCGGGAGTCGGCGCGGCGGTCGCGCATGCGCAAGCAGCGGCAGCTGAGCGAGCTGTGGGCGCAGGTCA
CGCACCTCCGCGGAGCCAACCGCCGCCTCCTCGACGAGCTCAACCGCGCATTGCGCGGGTGCGCCGACGCCCGCCGCGAG
AGCGCCAAGCTCAGGGACGAGAAGGCCAAACTGAATGAGAAGCTCGAGCAGCTGTTGCAGCAATCAGCACCGGAGAAGAA
GGCCGCCTCCTC------TCCGGCCTCGAGCAATCACAGTAGCAGCTCCTCAGAGCCATGCAAGAACAGCACAGCTGCTG
CAGCTTCTATCGAATGAAATGTTGTTTTTACTC----ATATTATCCACCCAAATTTTTAGAGGATAACTACTACTGTATC
AATAA---GATTATAAGAGCATGTGTAACAAAAGAATGTTAAATAATTTATTTAATGGCCATGGCTGGGGTCATGCATGC
ATGCACCCTGCAATCAGTTTCCCTATCAGGAATATGTTTTGTGTAACAGATTTTGGTACTTATCCTGTGTTGATAAATTA
ACATGGATAGGATGTAGTG-------------------------------------------------------------
-----------------------------------------------------CTATATATTTGCAAGTTGC-AAGCTTG
TGATGAATGAAACCAATAGAACAGTAGCAAGACCAAAGTATGAGAGTGAGAGATCAAGGAAGGATCAAAAACCGGTGAGA
ACGACAAGTGTTTAGCTTTCCATAATGCGG-TGAACTACAAAGGAAAAA-ATATAGTGCATTCCACCCTTTTTAATGAAA
TTTAATGATTATAATTTCGAACCTTTTCCTCCACTTGATGATGTCATGAGCTCAACTTGTATGTAATGCTTTGTGATTGC
TAATGTATCGTCTACTTCGTTGATGTCGACTTACCTACCTATCAGCTGCTTTTCTTTGGCAGCTAAGTCTCCC--AGCAT
GCTATAGTTTTTGCAATGTTGTATCGAACAAGGTTCGACATATGTATCTAGCAATTTTGGCATATGATTGTAGCATCAAT
GCAAGATCTAACAACATATCCTATTCACTGAGATGCTTGTGGGTATATGTTCCCAAGAATCTTGAGCAAAAGCACAGTAA
CATGTGCATGCATGCCGCAAAACAAATCTACGCATGCATGCTTT-TCACAA--TATATAAATTCCATTGCCATGTGCATA
GAC----GTGAATGTTTTGTTAATCCAGATGGAAAATGAGCTTCAGGAGTCGGATTTACAGCATGGAAACCTTCAAACAC
AGGACAAGTGGATTTGCCAAGTTAAAATGCCTAAAAACTAGGAGGAGGCATATTTGCTATTCAAATGGTTGTGGAAAA--
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>SNPs
---------------------S--------------------S-----------------------S-------------
---------S----------------------------------------------------------------------
-------------------S------------------------------------------------SS----------
-----------S--------------------------------------S--------S--S-S------SSSSSSSSS
-------S--S-------S----S---------S-------S---------------------S-------S--SSS---
-------------SSS-------------S-------S----SS---------S-----------------S--------
----SS------------------------------------S------S------S----S----------------S-
--------S----S--S--S---S-------------S-------S--S------S----------------------S-
-S---------SS--S-S-----S---SSSSSSSSSSSS-------------S---SS---S-------SS---SSS-SS
S--SSSSS--S-------------------S---------------------S-SSSS-SSSSSSSSSSSS---------
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------------------------------S-S---------SSSSSSSSSSSSS--------------SS-----S---
-----------------S--------------------------------------------------------------
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------S---------------------S----------------------S----------------------------
----------------------S---------------------------------------------------------
-----------S---------------------S-----------S----------S------------S----------
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-S------------------------------------------------------------------------------
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------------SSSSSS-------------------------S---------------------S--------------
---------------------------------SSSS-------------------------------------------
----------------------------S-S--S----------S-----------------------------------
----------S--------------------------------------S--------------------S---------
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--------------------------------------------S----S----------------SS--S--S------
------------S--------S---SS-S---------------------S--------------S--------------
----------------------------------S---------------------S----------------SS-----
-------------------------------------------------------------------S------------
---------S----------------------------------------------------------------------
------------------------------S------------------------------------------------S
S-SSSSS--------------------------S-----------------------S----------------------
------------------------------------------------------SS----------------------SS
SSSSSSSSSSSSSSSSSSSSS
>forward_318
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----------------------------------------------------------TCCTTCTGCATCCGTCCATG--
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>reverse_1543
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----------------------CGAAGAAGCGGCTCACCTC---------------------------------------
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>forward_319
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-----------------------------------------------------------CCTTCTGCATCCGTCCATGA-
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>reverse_1938
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-----------------CTCCGGCCTCGAGCAATC---------------------------------------------
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>forward_698
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--------------------------------------CCGTTTGAGGCGTCTGTCTA----------------------
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>reverse_3018
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---------------------------------------------------------GCAGCATGGAAACCTTCAAGC--
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