>input_sequence_72174
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-------ATGAT------------------------CACCGCTGGAGCCATCCTTTCTCTCGTGATGATCATCTTCTTCT
CCACCGTCTGCAACTCCGACCCGGACCTCCTCTTCGACTACTGCGTCGCCGACACGACGTCTGCCGCCGCGTCGTTCCAC
TTCAACGGCCTGCCGTGCATCGACCCGGCGACGGCGTGCGCCGACCACTTCGCGACCTCGGCGCTCTCCGAGCCCACGGA
CCCGTCCGCCACGCTCTTCGGCTTCAACGCGACGATGACCAGCCCGGCCGCGTCCCTCCCGGGCGCGAACGCGCAGGGGC
TCGCCATGGCGCGCGTCGACCTCGCGCCCGGCGGCATGGCGCCGCTGCACTCCCACCCGCGCGCGTCGGAGGTGGCGCTC
GTGATCTCCGGCGGCGTGCTGGTGGGGTTCGCCGACACGTCGTACCGGCTGTACACGCAGCGGCTGCGCGCCGGCGAGGC
CTTCGTGTTCCCGAGGGGCATGGTGCACTTCATGCGCAACGAGGACGCCTCGTCCCCCGCCGTCGTGCTGTCCGGGCTCA
ACAGCCAGAACCCCGGCGCGCAGCTCGTGCCCTTCTCGGCGTTCCTGACGGAGCCGCGGCTGCCCGACGAGGTCGTCAAG
AAGACGTTCAGGATCACCGGGCAGGGCGTGCAGAGGATCCAAAGGAGCCTCGGTGGGTCGTAG-----------------
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>chr4B_1_TraesCS4B01G294100
GCCTAGTACTGTTTTCACATGTTCCATCGAAATAACTACTTCATGTTATGAGAACAT--T-TTGAACCGTGTTGCCTAGT
AATGTTTCCACATGTTCCATCGAAATAACTACATCAGGTTGTGGGAGTATATTTGAACTGGGA-------TGCCTGGTAC
TATTTTCACATGTTCCAGCGACTCACCACTTCACCATGAACTGCAGGTGACATATTGCCCGGACTGCACGAGGGCGTGCC
AATATGACACACAAGCTCTCGTTGGAAGCCAAGGCCCCATCAGAGGCAGTGATTTTTTCAACACGGTGTTTGGCTGCCTC
TTTCTCGATGATTTGACGAATGTGTCACCACTGTAATCATCTTGTCAAGAGCCGTTTCTCCCTCGAATACCAAGAGCTGT
TGTAACACCAATGTCCTTGCATCATGATATGATCAAGGGTTCTTGTACGCTTATGCATCAACGAACTGCATTTGTGTCAG
------------GATATGATCATGTATTCATGTGAATGAAGCTTAAGAT-GGATTTGCTTGTGTTACTTGATAAATATTG
CTGCTTCTGATACTAATGTTGCATGCATATGAGATTGAACTATA-------------TCAAGTAGCAAATTATTACAATG
CCATGCCATTGCAAGAGTATTGCAATAGTTTACCAGAGTAATAGGAAGTCTCAAGGATGTGTTAGAATATGTTTGTGTTT
CGATGAGTTTTATGTTCTGTGGGTTTCAAAAAGATTCCAAGAAGAGATTGAATGTTACCAAAGGGTTAACTGGTGACTTG
AAAAGAAAACCCTCCATCATCAAAAGTGTGCATGTCTCATTCTCCAAGGCAAGGCAAGGTAACGTAGCCAATGCAGCTAC
TCACCCTCACAGTAACTTTGAAGCATCTCATCTGCCAGCTCCACAAAGCCCAAGAATACATGCTCGAGTGACACACTGAT
TGCACATTATATGTGCACATGAGCCATGGC-------TGCTGATCACTGATCCTACGTACTGCAAGACTAGCGAATT---
-CTAACCATGAT------------------------CACCGCTGGAGCCATCCTTTCTCTCGTGATGATCATCTTCTTCT
CCACCGTCTGCAACTCCGACCCGGACCTCCTCTTCGACTACTGCGTCGCCGACACGACGTCTGCCGCCGCGTCGTTCCAC
TTCAACGGCCTGCCGTGCATCGACCCGGCGACGGCGTGCGCCGACCACTTCGCGACCTCGGCGCTCTCCGAGCCCACGGA
CCCGTCCGCCACGCTCTTCGGCTTCAACGCGACGATGACCAGCCCGGCCGCGTCCCTCCCGGGCGCGAACGCGCAGGGGC
TCGCCATGGCGCGCGTCGACCTCGCGCCCGGCGGCATGGCGCCGCTGCACTCCCACCCGCGCGCGTCGGAGGTGGCGCTC
GTGATCTCCGGCGGCGTGCTGGTGGGGTTCGCCGACACGTCGTACCGGCTGTACACGCAGCGGCTGCGCGCCGGCGAGGC
CTTCGTGTTCCCGAGGGGCATGGTGCACTTCATGCGCAACGAGGACGCCTCGTCCCCCGCCGTCGTGCTGTCCGGGCTCA
ACAGCCAGAACCCCGGCGCGCAGCTCGTGCCCTTCTCGGCGTTCCTGACGGAGCCGCGGCTGCCCGACGAGGTCGTCAAG
AAGACGTTCAGGATCACCGGGCAGGGCGTGCAGAGGATCCAAAGGAGCCTCGGTGGGTCGTAGAGGAAAAAATCGCCTA-
---TGCCTGCATCTAGTATACTACTCGGCTACTCCTTACATAATTACTCATGTGCTACGACAGGAGTCCAAATATTGTAC
GCGATCGTCATGACTTATCTGTCATTTTTTTAC-TAATGTGATTATTATACATACTATCAAAAGGGATCGTGCGTTCCAA
CCGAAGATTTTTTTTCATATTCTCCAA--GGTTATGACCACATTTTGCTACATCACCGAGATACACTATTAC-TCAATTT
CGTGAAATAAACACTTT---TTGAAACTCATGCACATATTTGAAATCGTGAACATTTTTCATATTTTTGATCACTTTTAC
AAATTTTCAAGCATTTTCTAAAATCAAGAACATGTTTTCAATTCATGAAAATTTTATACTACTCCCTCTGTCCGGAATTA
CTTGTCATCAAAATGGATGTATCTAGAACTATAATACATCTAGATACATTCATTTCAATGACAAGTATTTCTGGACGGAG
GGAGTATTAGCAAACATTTTCTAAACAATTTTATTCAATCGGCGAGTATTTATAGAATTGACGGACTTTTTTGGAAATTG
GCGGGACAATTTTTTTAAATTCACAAACATTTTTTTAATTTAACAAACATATTTTAATTTAACAAACATATTTTAATTTA
ACAAACTTTTTTTCAAACGCATGATCATTTTTTGAGTTAACAAACATTCCATGAATGAATAAACTATTTAGTAAGTCCCG
ATCAGTTTTTGAATTTTTAGGATATTTTTCCACTAACGAACATTTTTTGAATTGGCGAAATTTTGTTTAATTTCATTAAC
ATTAACATATTTTAATACATGAACTTTATAAAAAATCATGAACATTTTTTGATTTCCCGAACATCTGTCTTATAAAATTC
AAACTTTTTTTAATATATTCTTTTACAAAATCACGAACACTTTTAGAATCCACAAACATTTTATGATTTACTAAAAAATT
TATTTAAAATTCATTTTTCAATTTTCCGAACATT
>chr4D_1
GCCTAGTACTGTTTTCACATGTTCCATTGAAATAACTA---CATGTTATGAGAACAT--TCTTGAACCGTGTTGCCTAGT
AATGTTTCCACATGTTCCATTGAAATAACTACATCAGGTTGTGGGAATATATTTGACCTGTGA-------TGCCTGGTAC
TGTTTTCACATGTTCCAGCGACTGACCACTACCG--TGAACTGCAGGTGACATATTGCCCGGACTGCACGAGGGCATGCC
AGTATGACACACAAGCTCTCGTTGGAAGCCAGGGCCCCATCAAAGGCAGTGATTTTTTCAACACGGTGTTTGGCTGCCTT
TTTCTCGACGATTTGACGAATGTGTCACCACTGTAATCATCTTGTCAAGAGCTGTTTCCCCCTGAATGT-CAAGAGCTGT
TGTAACACCAATGTCCTTGCATCATGATATGATGAAGGGTTCTTGTACGTTTATGCATCAACGAACTGCATTTGTGACAG
GATAGAAACTCTGATATGATCATGTATTTATGTGAATGAAGCTTAAGATGGGATTTGCTTGTGTTACTTGATAAATATTG
CTGTTTCTGATACTAATGTTGCGTGCTTATGAGATTGAACTATACAACGGTACGGGTTCAAGTAACAAATTA-TACAATG
CCATGCCATTGCAAGAGTATTGCAATAGTTTTCCAGAGTAATAGGAAGTCGGAAGGAAATGTTAGAATATGTTCGTGTTT
AGATGAGTTTTCTGCTCTGTAGGTTTCAAAAAGATTCCAAGAAGAGATTGAATGTAACCAAAGGGTTAACTGGTGACTTG
AAAAGAAAACCCTCCATCATCAAAAGTGTGTATATCTCATTCTCCAAGGCAAGGCAAGGTAACGTAGCCAATGCAGCTAC
TCACCCTCACAGTAACTTCGAAGCATCG--TCTGCCAGCTCCACAAAGCCCAAGAGTACATGCTCGAGTGACACCCTGAT
TGCACATTTTATGTGCACATGAGCCACGACTGCTGAATGCTGATCACTGATCCTACGTACTGCAAGAGCAGCGAATTCTT
TCTAGCCATGATCACCACGGCCGACCATGCCGCTCCCATCGCTGGAGCCATCCTTTCTCTCGTCATCATCATCTTCTTCT
CCACCGCCTGCAACTCCGACCCCGACCTCCTCCTCGACTTCTGCATCGCCGACACGACGGCGGCCGCCGCGT---TCCAC
TTCAACGGCCTGCCGTGCATCGACCCGGCGACGGCGCGCGCCGACCACTTCGCCACCTCGGCGCTGTCCCGGCCCACGGA
CTCGTCCGGCACGCTCTTCGGCTTCAACGCGACGATGACCAGCCCGGCCGCGTCCCTCCCCGGCGCGAACGCGCAGGGGC
TCGCCATGGCGCGCGTCGACCTCGCGCCAGGTGGCATGGCGCCGCTGCACTCCCACCCGCGCGCGTCGGAGGTGGCGCTC
GTGCTCTCCGGCGGCGTGCTGGTGGGGTTCGCCGACACGTCGTACCGGCTGTACACGCAGCGGCTGCGCGCCGGCGAGGC
GTTCGTGTTCCCGAGGGGCATGGTGCACTTCATGCGCAACGAGGACACCTCAGCGCCGGCCGTCGTGCTGTCCGGGCTCA
ACAGCCAGAGCCCCGGCGCGCAGCTCGTGCCCTTCTCGGCGTTCCTGACGGAGCCGCGGCTGCCCGACGAGGTGGTGAAG
AAGACGTTCAGGATCACCGGGCAGGACGTGCAGAGGATCCAAAGGAGCCTCGGTGGGTCGTAGGGGG-------------
----------------------ACTCGGCTACTCCGTACATAATTACTCGTGTGCTACGACAGGGGTCCAAATATTGTAC
GCGATCGTCATGACTTATCTGTCATTTTTTAC-TTAATGTGATTATTATACATACTAGCAAAAGGGTCCGTACGTTGTAA
AGGGAGAAAAAAAATTCATAATCTTTGATGGTCATGACCACATTTTGCTGCATCACCGAGATACACTATCCTATCAATTT
CGTGAAATCATGAACATGTGTTTATACTCGTGCACATGTTTGAAATCGTGAATATTTTCAAATTCA-TGAACACTTTTAC
AAAATTTCAAACATTTTCTAAAACAAGGAACATTTTATGAATTCATGAACATTTTATACTA-------------------
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>chr4A_1
GCCTAGTACTGTTTTCACATGT-CCATCAAAATAACTGCTTCATGTTATGAGGAACATAT-TTGAACCGTGCTGCCTAGT
AATGTTTCCACATGTTCCATCGAAATAACTGCATCAGGTTGTGGGAATATATTTGACTGTGATGCCTTATTGCTTGGTAC
TGTTCTCACATGTTCTAGCGACTCACCACTTGACCATGAAATGCAGGTGACGTATTGCCCGGACTGCACGAGGGCGTGCC
AATATGACACGCAAGCCCTCGTAGGAAGCCAGGGCCCCATCAAAGGCAGTGATTTTTTCAACACGGTGTTTGGCTGCCTC
TTTCTCGATGATTTGACGAATGTGTCACCACTGTAATCATCTTGTCAAGAGCTGTTTTTTCTCAAC-GT-CAAGAGCTGT
TGTAACACCATTGTCCTTGCATCATGATATGCACAAGGGCTGTTGTACGTTTATGCATCAACGAACTGCATCCGTGACAG
GGTAGACACCCATGAACTCTGCTAGTTC----------AAGCTTAAGATGGAGTTTGCTTGCGTGGCTTGATAAAAATTG
CTGCTTCCGATAATAATGTTACAT-CTTATGAGTTTGAACTATA-------------TACAATGATTTATG--TACAATG
CCACGC--------------------------------------------------------------------------
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>chr4A_1005
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-----------T------------------------CATCGCTCGAGCCATCGTTTCTCTCGCCATGATCTTCTTCTTCT
CCGCCGTCTGCAACTCCGACCCGGACCTCCTCTTCGACCACTGCGTCGCCGACACGGCCGCCGCCGCGGCGT---TCCAC
TTCAACGGCCTGCCGTGCATCGACCCGGCGACGGCGCGCGCCGACCACTTCGCCACCTCGGCGCTCTCCGAGCCCACGGA
CCCGTCCGCCACGCTCTTCGGCTTCAACGCGACGGTGACCAGCCCGGCCGCGTCCCTCCCCGGCGCGAACGCGCAGGGGC
TCGCCATGGCGCGCATCGACCTGGCCCCCGGCGGCATGGCGCCGCTGCACTCCCACCCGCGCGCGTCGGAGGTGGCGCTC
GTGCTCTCCGGCGGCGTGCTGGTGGGGTTCGCCGACACGTCGTACCGGCTCTACACGCAGCGGCTGCGCGCCGGCGAGGC
GTTCGTGTTCCCGAGGGGCATGGTGCACTTCATGCGCAACGAGGACGTCTCCGCCCCCGCCGTCGTGCTGTCCGGGCTCA
ACAGCCAGAGCCCCGGCGCGCAGCTCGTGCCCTTGTCGGCGTTCCGGACGGAGCCGCGCCTGCCGGACGAGGTCGTCAAG
AAGACGTTCAGGATCACCGGGCAGGACGTGCAGAGGATACAAAGGAGCCTCGGTGGGTCGTAGGGGGGAAGATCGCCTCC
GCTTGCATCGATTTAGTACTGTACTCGGCTACTCGGTAGATAATTACTCGTGTGCTACCACAGGAGTCTAAATATTGTAC
GCAATCATCATGATTTACCTGTCATTTTTATCATTAACGTGATTATTA--------------------------------
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>SNPs
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----------------------------------------------S---------S-----------------------
-S------------------------------------------------------------------------------
-------------------------------S----------S-------------------------------------
----------------------------------------------------S----------SS-SSSS----------
-------------------------------------------------S--------------------------S---
----------------------------S---------------------------------------------------
--------------------------S-------------------------------------S-------S-------
-------------------------------S------------------SS-----SS--------------S------
S----------S--S-----S----------------------------------S------------------------
------------------------------S--S----------------------------------------------
------------------S--------SSS-------------------------S------------------S-----
--------S-----------------S-S--------------------------------------SS-----------
----S---------------------------------S------------------------S----------------
-----------------------------------------------------------S-S----------SSS-----
------------------------------------S----------------S--------------------------
------------------------------------------------------------S-------------------
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---S----------------------------------------------------------------------------
S--------------------------------------------------SS---------------------------
---------S----------------------------------------------------------------------
-------------------------S-------------------------------------S--SS--S-------S-
------S-SS--S-----SSS--------------S-------------S------------------------------
-------------------------------SS------------------------S--------SS---S----SS--
SS-S---SSSSSSS-SSSSSSSSSSSS-----S----------------S-------------------SSS--------
--------S-SS-SSS------S-S----S-------S--------------S-----SS-SS-SSS---S---------
---S------S------------SS-S------S--S-S----------S-----------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_272
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------------AAGCTCTCGTTGGAAGCCAA------------------------------------------------
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>reverse_1751
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----------------------------------------------------------------------AATCGCCTAT
GCCTGCATCT----------------------------------------------------------------------
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