>input_sequence_72168
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--------------------------------------------------------------------------ATGGCA
------ATGGGGTCCCCTAAATCGAAATCGAGCTCCCCCATGGCGTCCTCCAAGCCCCCCACGCCGTCCTCCGCGAGCCA
CCACCAGGCGCGCCGCCGCTGCCGCCGGTGCCTCGTCGCCACCACGGCCGTCCTGCTCGCCCTGGCCGTCGTCCTCGCCG
TCCTCTTCCTCACCGTCCTCCGCGTCCGCGACCCCACCATCCGCCTCGTGTCCACCCAGTTCGTGGGCGCCGCCCCGCGC
TTCGCGCTCCTCCCGACCCCGTCCCTCCACCTCAACCTCACGCTCCTCGTCACGGTGTCCGTCCACAACCCCAATCCGGC
CTCCTTCACCTACGCCGGCGGCGGCCACACCAACCTATCGTACCGCGGCGCCCACGTCGGGGACGCCGAGATCGACCCGG
GCGCCGTCCCGAGCCGCGGGGACGCGGAGGTCCGGGTCGCGCTCACGCTGGAGGCGGACCGGTTCGTCGCCGCCGGGGAC
GTGAGGCAGCTGGCCGAGGACGTGGAGAGCCAGGCGATGCCGCTAGACGCCGCCACCACCGTCCCCGGCACGGTGCTGCT
GTTCGGCGTGTTCAGGCGCAGCGCCGTGGCATACTCCGAGTGCAGGCTCGTGGTCGCCGTCATGGGGATGCGCGTCCAGA
GCCACGAGTGCAACAGCCGCACCAAGCTCTGA------------------------------------------------
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>chr4A_1_TraesCS4A01G192400
CCAGCTCATGACCAAATGTATGTGGACAACCCCAAACATATTCCTGGACATTTGGGGTCTTGTTTGGTGAACCGTAGAAG
AAGTCTTAAGGGCAACTCCAACGCACGAACGCATTTTGTCTGTTTAGATCTGTGTCGACAGAAATCACAACCCAATGCGC
AGACATAAACACGTTTTGTGTCCATGTGGACGCAAAACCGCCTCAAATTTGGGCTGGGTTTGCATCCACACGAACACGAG
ATAGACACACCGCGCATTCGCTCAGTGTCCGCCCTACAGTCCTTTTAGATGCGCGCGCGTGGGGCCGGAGCGCCCACTCT
TCTCCCTCTCTCTGCCCCCAACCGCTCGATAGTGCCCAACCCTAGCCATTGTTACGGCCGGTCGGAGAGGGTTTCGGTGT
CGGCCATCTCAGCCTCCAGCCGTATGCGCGAGCTCGAGATACACCGCCGGCACTGAGCTCTCCCCGAAGACCTCCTCCAC
GATCCGGCATAGGATGTTGACTCGCCGAACTAGGACGCCTGGTTTGTGGACGAGCACGATGCGCGCCACCGGTCCTTCTT
CGCCTCCCGTGTGCGTGCTCCCAGTCCACCAGCGGCTATTGAAGGGGAGACAGGTGAGGCGTCCGACGAGGCCCACAAGA
AGGCCGGCGAGGAAA---GAGCTCGAGGAGTTCGCCAAGTGGCTGGGCCTGGCATTGATCCTGGCCCGGAGC--------
-----------------AGCCGGAGCACGCGTTGGAGTTGGATTTGCCCCCACCCCAAGATAAGAATGAAAATGTCTGGA
TGATAATCAAAAGGCCCAAAGAAATACTTGAGATT--AAGAAATCTCAAGCAGGCAATCTATGAAGTTTCCTTTTTCCGT
TCCTGTTAACCAGTTCTTTTTGCGCGGTAACCAATTCAGACGCAACGGCACCACGCTGTGCGGTGCTGTCCACGTACGTA
C----GGTACCGTCCATCGTCAACAGCTCGTCAAAATTCCCTCCCCGGCCTTGCCTACGCCATCGCATCCTCGGATGGCA
------ATGGGGTCCCCTAAATCGAAATCGAGCTCCCCCATGGCGTCCTCCAAGCCCCCCACGCCGTCCTCCGCGAGCCA
CCACCAGGCGCGCCGCCGCTGCCGCCGGTGCCTCGTCGCCACCACGGCCGTCCTGCTCGCCCTGGCCGTCGTCCTCGCCG
TCCTCTTCCTCACCGTCCTCCGCGTCCGCGACCCCACCATCCGCCTCGTGTCCACCCAGTTCGTGGGCGCCGCCCCGCGC
TTCGCGCTCCTCCCGACCCCGTCCCTCCACCTCAACCTCACGCTCCTCGTCACGGTGTCCGTCCACAACCCCAATCCGGC
CTCCTTCACCTACGCCGGCGGCGGCCACACCAACCTATCGTACCGCGGCGCCCACGTCGGGGACGCCGAGATCGACCCGG
GCGCCGTCCCGAGCCGCGGGGACGCGGAGGTCCGGGTCGCGCTCACGCTGGAGGCGGACCGGTTCGTCGCCGCCGGGGAC
GTGAGGCAGCTGGCCGAGGACGTGGAGAGCCAGGCGATGCCGCTAGACGCCGCCACCACCGTCCCCGGCACGGTGCTGCT
GTTCGGCGTGTTCAGGCGCAGCGCCGTGGCATACTCCGAGTGCAGGCTCGTGGTCGCCGTCATGGGGATGCGCGTCCAGA
GCCACGAGTGCAACAGCCGCACCAAGCTCTGACCCGATGATCGAT-----------------GGATCTCGCCGGAGAAGA
TTGGGCGCGAGGCATGGCCGTGAAGGGGGGCGACACGTGCAGCCACGCCAGCGCACAGGGGAGTTTGGTGTGCCCCTGTG
CGGTTACACGTTCGATACAAATG---------------GAGGATTGAAATTTAAACAGCGGATTCCCGCAAAATCGATGC
GTGTGTTTCTACACGTACGTGCGAGATTGGGGATTTGTATCTGATCTGACGATAAGCTATGACTTGAACATGGTAGTGTA
GTGTTTTTTTTTAGGAAATCACCGAGGGAAGAGTTCTCTCACGTTATACTAGATCGGAATCGCGCCTTGGCGCGAGGGTG
CTGGTCCAACATTTTGGTCAAGCTGGTAATGTTAAGTCAGTAGTAATCCAAGTTTATAGTACATATTCAAACAAGATAAA
AAAAACAAAAGAATGAAGAAATATTCACACATGGTAGAAGCAAG---------------ACAATATGGAATTCAACATCA
CCATAACATTATCGTAAGGCAGCATCGAGTTTAGTGCATTCACGAGAACACAAAACA----CACTTGACATTAAGTCTGA
TACTAAAAGCGTGAATGCGAGAGAGGCAATGGATAGAGTATGAGCATGATAA-AACAGAACGAACTACA-----------
-------------------------------------------------------ATGCAAATAAGTGGCTTCATTCAAC
TGCCTTGTCAATGAGCTTCATAGGCAACCTGATGCAAACAATATGTGAGATATATGGCATATAATGATTTCTCTATAGAC
AATGCACTTGAAGTTTCGAAGGCAAAGGAACATATCTGATACTCCCTGA-TCCCTGCCGCCTCGACAAAGCTTGACCAAT
TGTTGTTATTGTGGCCCTAGACC-AAAGCGCGCCTTGGCGCACATTGCCCGTCCAAGTGCCATGACCCAGCATGTATAAA
TCTTGTACATTCAAAGGAAATTATGGCACTCTTTCAAGACTAATGAGTTTAGTGGCGATTACAAACAGTAGAGATATATA
AAAAACATGGTATACTGAGTATACTAAGTCAA
>chr4B_1
CCAGCTCATGACCAAATGTCTGTGGACACCCCGG-ACATATCCGTGGACATTTGGAGTCTTGTTTGGTGAACCATAGGAT
AAGTCTTAAGGGTAACTCCAACGCATGAACGCATTTTTTCTGTTTAGATCCGCGTCGACAGAAATCACAGCCCAATGCAC
GGACATAAATCTGTTTTGTGTCCATGTGGGCGCAAATCCGCCTCAAATTTGGGTCGGGTTTGCATCCATACGAACATGAG
ACGACCGCGCCGCGCGTTCGCTCGATGTCCGCCCTACAGTCCTTTTAGATGGGCAGGGGCGGGGGA----CGCCCACTCT
TCTCCCTCTCTTTGCCCCCAATCGCTCGATAGTGCCCAACCCTAGCCATTGTTGCTGTTGGCCGGAGAGGGTTTCGGTGC
CAGCCATCCCGGCCTCCACCCGTGCCGACGAGCTCAAGATACACCCCCGCG---GAGCTCTCCCTGTAGACTTCCTCCAC
GACCCGGCATAGGACGTCGACTTGCTGAATTGGGACACCTGGTTCGTGGACGAGCACGACCCGCGCCGCCAGTCCTTCTT
CGCCTCCCGTGTGCGTGCTCCTAGTTCACGTGCGGCGATTGAGGGGGAGACCGGTGAGGAGGCCGATGAGGCCTACAAGA
AGGCCGTCGAGGACTCCA-AGCTCGAGGAGTTCGCCAAGTGGCCGGGCCTGGCATTGATCCTGGCCGCATTGGCCGCAGG
CGATGTCGTCGTGCCCAAGTCGGAGCACGCGTTGGAGTCGGATTTGCCCCCA-----AGATAAGAATGAAAATGTCTGGA
TGATAATCAAAAGGCCCAAAAAAATGATT----------GAGATTTGAAGCAGGCAACGTATGAAGCTTT-TTTTTTCGT
TCCTGTTAAC---------------------CAATTCAGACGCAACGGCACCACGCTGTGCGGTGCTGTCC----ACGTA
C----GGTACCGTCCATCGTCAACAGCTCGTCAAAGTTCCCTCCCCGGCCTTGCCTACGCCATCGCATCCTCATCCTCGC
ATGG-CATGGGGTCCCCTAAATCAAAATCGAGCTCCCCCATGGCGTCCTCCAAGCCCCCCACGGCGTCCTCCGCGAGCCA
CCACCAGGCGGGCCGCCGCCGCCGCCGGTGCCTCGTCGCCACGGCGGCCGTCCTGTTCGCCCTGGCCGCCGTCCTCGCCG
TCCTCTTCCTCACCGTCCTCCGCGTCCGCGACCCCACCATCCGCCTCGTGTCCACCCAGTTCGTGGGCGCCGCCCCGAGC
TTCGCGCTCCTCCCGACCCCGTCCCTCCGCCTCAACCTCACGCTCCTCGTCACGGTGTCCGTCCACAACCCCAACCCGGC
CTCCTTCACCTACGCCGACGGGGGCCACGCCAACCTCTCCTACCGCGGCGCCCACGTCGGGGACGCCGAGATCGACCCGG
GCGCCGTCCCGAGCCGCGGGGACGCGGAGGTCCGGGTCGCGCTCACGCTGGAGGCGGACCGGTTCGCCGCCGCCGGGGGC
GCGAGGCAGCTGGCCGAGGACGTGGAGAGCCGGGCGATGCCGCTGGAATCCGCCACCACCGTCCCCGGCACGGTGCTGCT
GTTCGGCGTGTTCAGGCGCCGCGCCGTGGCATACTCCGAGTGCAGGCTCGAGGTCGCCGTCATGGAGATGCGCGTCCAGA
GCCACCAGTGCAACAGCAGCACCAAGCTCTGACCC----------------CGATGATCGACGGATCTCGCCGGAGAAGA
TTGGGTGCGAGGCATGGCCGT-AA-GGAGGCGCCACGTGCAGCCACGCCAGCGCACAGGGAGGTTTGGTGT------GTG
CAGCTACACGTTCGAACGTCCGCTCACCGGGTTCGACCGAGGATTGAAATTTAAACAGCGGATTCCCGCAAAATCGATGC
GTTTG-TTCTACCCGTACGTGCGAGATTGGGAATTTGTATCCGATCTGACGATAAGCTATGACTTGAACATGGTAGTGTA
GTGTTTTTTTTTAGGAAATCACCGAGGGGAGAGTTCTCCCATGT------------------------------------
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>chr4D_471
CC------------------------------------------------------------------------------
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------------------------------------------------------------------------TCATCCTC
GACCCGACATACGACGTCGACTAGCCGAACTGGGACACCTGGTTAGTGGACGAGCATGATGCGCGCCGCCGGTCCTTCTT
CGCCACCGCGTCAAGTGCTCCTAGTCCACCAGTGGCAGTTGAGGGGGAGACAGGTGAGGCATCCGACGAGGCCCACAAGA
AGGCCGACGAGGATGTCTGAGCTCGAAGAGTTCGCCAAGTGGCCGAGCCTGGCATCGATCCTGGCCCGGAGC--------
-----------------AGCCGGAGCACGCGTTGGAGTTGGATTTGCTCCCA-----AGATAAGAATGCAAATGTCTGGA
TGATAATCAAAAGACCCAAAGAAATGCTTGAGATTTGAAGAAATTTCAAGCAGGCAACCTATGAAGGTT--TTTTTTCGT
TCCTGTTAACCAATTCTGTTTGCGCGGTAACCAATTCAGACGCAACGGCACCACGCTGTGCGGTGCTGTCC----ACGTA
CGTACGGTACCGTCCATCGTCAACAGCTCGTCAAAGTTCCCTCCCCGGACTTGCCTAGGCCATCGCATCCTCATCCTCGC
ATGGGCATGGGGTCCCCTAAATCGAAATCGAGCTCCCCCATGGCGTCCTCCAAGCCCCCCACGCCGTCCTCCGCGAGCAA
CCACCAGGCGCGCCGCCGCCGCCGCCGGTGCCTCCTCGCCACGGCGGCCGTCCTGCTCGCCCTGGCCGTCGTCCTCGCCG
TGCTCTTCCTCACCGTCCTCCGCGTCCGCGACCCCACCATCCGCCTCGTGTCCACCCAGTTCGTGGGCGCCGCCCCGCGC
TTCGCGCTCCTCCCGACCCCGTCCCTCCGCCTCAACCTCACGCTCCTCGTCACGGTGTCCGTCCACAACCCCAACCCGGC
CTCCTTCACCTACGCCGGCGGGGGCCACACCAACCTATCGTACCGCGGCGCCCACGTCGGGGACGCCCAGATCGACCCGG
GCGCCGTTCCGAGCCGCGGGGACGCGGAGGTCCGGGTCGCGCTCACGCTGGAGACGGACCGGTTCGTCGCCGCCGGGGAC
GTGAGGCAGCTGGCCGAGGACGTGGAGAGCCGGGCGATGCCGCTAGACGCCGCCACCACCGTCCCCGGCACGGTGCTGCT
GTTCGGCTTGTTCAGGCGCAGCGCCGTGGCATACTCCGAGTGCAGGCTCGTGTTCGCCGTCATGGAGATGCGCGTCCAGA
GCCACGAGTGCAACAGCAGCACCAAGCTCTGACCCGATGATCGCGGAATTCCGATGATCGCCGGATCTCGCCGGAGAAGA
TTGGGTGCGAGGCATGGCCGTGAA-GGAGGCGCCACGTGCAGCCACGCTAGCGCACAGGGGAGTTTGGTGTGCCCCTGTG
CGGTTACACGTTCGATACAA-TG---------------GAGGATTGAATTTTAAACAGCGGATTCCCGCAAAATCGATGC
GTGTG-TTCTACACGTTCGTGCGAGATTGGGGATTTGTATCTGATCGAGAGAAG--------------------------
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>chr4A_1973
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--------------------------------------------TATACTAGATCGGGGTCGCGCCATGACGCGAGGGTA
CCGGTCCAACATTTTGATCAAGCAGTTAATGTTAAGTCTGTAGTAATCCAAGTTTATAGTACATATCCAAACAAGATAA-
AAAAACAAAAGAAGGAAGAAATATTCACACGTGATAGAGGCAAG---------------ACAATATGGAGTTCAACATCA
CCATCACATTATCGTAAGGCAACATCGAGTTTAGTGCATTCACGAGAACACAAAAGATAGCCACTTGACATTAAATCTGA
TACTAAAAGCGTGAATGCGAGAGAGGCAGTGGATAGAGTATGAACATGATAA-AACAGAACGAACTACAGAGTCATAGAT
ATATGGCATCTAATAAGTGGCTTCATTCAACTGTGAGATAAGTGGCGAGGGAAGCATGCTAATAAGTGGCTTCATTCAAC
TGCCTTGTCGATGAGCTTCATAGGCAACCCGATGCAAACAATCTGTGAGATATACGGCATATAATGATTTTTCTATAGAC
AATGCACTTGAAATTTTGAAGGCAAAGGAACATATCTGATACTCGCTGAATCCCTGCCGCCTTGACAAAGCTTGATCAAT
TGTTGTTATTGTGGCCCTAGATCGGAAGCGCGCCTTGGCGCACATTGCCCGTCCAAGTGCCATGACCCAACATGTATAAA
TCTTGTACATTCAAAGGAAATTATGGCACTCTTTCAAGACTAATGAGTTTAGTGCTGATTACAAACAGTAGAGATATATC
AAAAACATGGTATACTGAGTATACTAAGTCAA
>chr3A_1974
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---------------------------------------------ATACTAGATCGGAATCGCGCCTTGGCACAAGGGTG
CCGGTCCATCATTTTGGTCAAGCAGTTAATGTTAAGTCAGTAGTAATCCAAGTTTATAGTACATGTTCAAACAAGATAAA
AA--ACAAAAGAAAGAAGAAATTTTA--ACATGGTAGAAGCAAGACAATATGGAGTTCAACAATATGGAGTTCAACATCA
CCATGACATTATCGTAAGGCAGCATCAAGTTTAGTGCATTCACGAGAACACAAAAGA----CACTTGACATTAAGTCTGA
TACTAAAAGCGTGAATGCGAGAGAGGCAGTGGATAGAGTATGAGCATGAT-A-AACAGAACGAACTACAGAGTCATAGAT
AACCG--------------------------------------------------ATGCAAATAAGTGGCTTCATTCAAC
TGCCTTGTCAATGAGCTTCATAGGCAACCTGATGCAAACAATCTGTGAGATATATGGCATATAATGATTTCTCTATAGAC
AATGCACTTGAAATTTCGAAGGCAAAGGAACATATCTGATACTCCCTGA-TCCCTGCCGCCTTGACAAAGCTTGACCAAT
TGTTGTTATTGTGGCCCTAGACC-GAAGCGCGCCTTGGCACACATTGCCCGTCCAAGTGCCATGACCCAGTATGTATAAA
TCTTGTACATTCAAAGGAAATTATGGCACTCTTTCAAGACTAATGAGTTTAGTGGCGATTACAAACAGTAGACATATATC
AAAAACATGGTATACTGAGTATACTAAGTCAA
>chr5B_1975
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----------------------------------------------TACTAGATCGGGGTCGCGCCATGGCGCGAGGGTG
CCGGTCCAACATTTTGATCAAGCAGTTAATGTTAAGTCTGTAGTAATCCAAGTTTACAGTACATATTCAAACAAGATAAA
AA--ACAAAAGAAAGAAGAAATATTGATACGTGATAGAAGCAAGACAATATGGAGTTT---------------AACATCA
CCATCACATTATCGTAAGGCAACATCGAGTTTAGTGCATTCACGAGAACACAAAAGATAGCCACTTGACATTAAGTCTGA
TTCTAAAAGCGTGAATGCGAGAGAGGCAGTGGATAGAGTACGAACATGAT-AAAACAGAACGAACTACAAAGTCATAGAT
ATATGGCATATAATAAGTGGCTTCATTCAACTGTGAGATAAGTGGCGAGGGAAGCATGCTAATAAGTGGCTTCATTCAAC
TGCCTTGTCGATGAGCTTCATGGGCAACCTGATGCAAACAATCTGTGAGATATATGGCATATAATGATTTTTCTATAGAC
AATGCACTTGAAATTTTGAAGGCAAAGGAACATATCTGATACTCCCTGAATCCCTGCCGCCTTGACAAAGCTTGACCAAT
TGTTGTTATTGTGGCCCTAGATCGGAAGCGCGCCTTGGCGCACATTGCCCGTCCGAGTGCCGAT----------TATAAA
TCTTGTACATTCAAAGGAAATTATGGCACTCTTTCAAGACTAATGAGTTTAGTGCCGATTACAAACAGTAGAGATATATC
AAAAACATGGTATACTGAGTATACTAAGTCAA
>chr5A_1976
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-----------------------------------------------ACTAGATCGGAATCGCGCCTTGGCGCGAGGGTG
CCGGTCCAACATTTTGGTCAAGCAGTTGATGTTAAGTCAATAGTAATCCAAGTTTATAGTACATATTCAAACAAGATAAA
AA--ACAAAAGAATGAAGAAATATTC--ACATGGTAGAAGCAAGACAATATGGAGTTCAACAATATGGAGTTCAACATCA
CCATGACATTATTGTAAGGAAGCATTGAGTTTAGTGCATTCACGAGAACACAAAAGA----CACTTGACATTAAGTCTGA
TACTAAAAGCTTGAATGCGAGAGAGGCAGTGGATAGAGTATGAGCATGAT-AAAACAGAACGAACTACATAGTCATAGAT
AACCG--------------------------------------------------ATGCAAATAAGTGGCTTCATTCAAC
TGCCTTGTCAATGAGCTTCATAGGCAACCTGATGCAAACAATCTGTGAGATATATGGCATATAATGATTTCTCTATAGAC
AATGCACTTGAAATTTCGAAGGCAAAGGAACATATCTGATACTCCCTG-ATCCCTGCCGCCTTGACAAAGCTTGACCAAT
TGATGTTATTGTGGCCCTAGACC-GAAGCGCGCCTTGGCGCACATTGCCCGTCCAAGTGCCATGACCCACCATGTATAAA
TCTTGTACATTCAAAGGAAATTATGGCATTCTTTCAAGACTAATGAGTTTAGTGGCGATTACAAACAGTAGAGATATATC
AAAAACATGGTATACTGAGTATACTAAGTCAA
>SNPs
-------------------S--------S---SSS------S-S-----------S-----------------S---S-S
------------S------------S-----------S------------S-S----------------S--------S-
S--------SSS-----------------S------S----------------SS-------------S-------S---
-SSSS-S-S------S-------SS--------------------------S--SS-S-S----SSSSSS----------
-----------S---------S-------------------------------S-S-SS--S-----------------S
-S------S-S-------S----SSSSS-------S---------S---SSSSS----------S-S----S--------
--S-----------S--S----S--------S----S-------S----------------------S------------
---------------------S--------------S-----S-------------------------------------
------S------SS----------------------------S------------------------------------
----------------------------------------------------SSSSS-----------------------
-------------------------S------------------S------------S--------S--SS-----S---
------------S----S-----------------------------------------------------SSSS-----
-----------------------------------S------------------------------------SSSSSSSS
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-------------------S----------------------SS------------------------------------
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----------------------------S---------------------------------------------S-----
---------------------S----------------------------------------------------------
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-------------------------------S------------------------------------------------
-----------------------------------------------------------------S--------------
-----------------S-------------------------SS-----------------------------------
-----S------------------S--S----S-----------------------------------------------
--------------------S-----------------------------------------------------------
-----S--------------------------------------------------------------------------
----------------------------S---------S--S--------------------------------------
-S---------------------S-S------------------------------------------------------
---------------------------------------------------------------------S----------
----S--------------------------------------------------S------------------------
----------------------------S---------------------------------------------------
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------------------------------------------S-------------------------------------
------------S-------------------------------------------------S-----------------
------------------------S-------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------
>forward_296
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------------------------------------CAGTCCTTTTAGATGCGCGC------------------------
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>reverse_1724
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-------------------------------------------ATGGATCTCGCCGGAGAAGA-----------------
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