>input_sequence_72164
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-------------------------------ATGGGCAGCCACCGCGAGCTCCACATCTGCCACCTCCTCACAGGCGAGC
GAGTCCGCCTGCCAGATGCTCTGAAATACTACTACGAAGGAATCATCTTTGCCGGCGACCTCATTCTCAGCTTTAATCGA
TACCATTACCACAACACCGTCCACTACTGCCGC------------------CACTGTCGAGAGGCGCGGTGCGATGAAGG
CTACAGGTTTCGTGACCCGATTTTCGTGACAGGCACCCTGTACGCATTGATCTATCCAAATCACTGCCTCGCTGTCATCG
AGCTTGACAACAATTCCGTGGTATTGTTGTTTCTTGGAGGTGAACCGAGTGCAGAAATAGTTCAAAATTGTTCGAT---G
TTGAGACTAGCAGAGTGCCGTGGTGAGCTATTGCTCGTTACTGCTGTGAGTTACCCGGTGGGG----TACCATGTTTTCC
AGTGGCAATCTGATAATAGGAAGTGGGTGAGGACTACCACCCTTGGTGGCTGTAGCTTGTTCTTTAATATTCTCCAGTTT
GCAGGTTGCCTTGGTCCGGATCATCCCACAGTTCGAGGGAATTGCTTGTACATCATTAAGTCCAATGGGCAGTGTATCAA
GTATTCTCTGGTTGATGGATCTTCTCATGAACTCGTTGTCGACTACCCAGCAC---------------------GACCAC
GGGCTTGGGTCCTTCCAAGCATTTGTTGA---------------------------------------------------
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>chr3B_1_TraesCS3B01G535600
GCCGAGCGCCTACAATGGGTCACACTACATTTGGCGAACCACATTTTAAGTTGGAACTTCAGATCCTCGATGATCGCAGC
ATACTGCGAGGAATCAGCTATTCTCATGTTCATGGCATCAACAAGCAGCTGCGAGTCCGTTTCAAAGACGACTCACGTGG
CACCCAGCTCCGTCGCAGTTGAAATGGCCGCTGCCAACGCGTTGATTTCAGCCCCAAAGGTGTGTAGTGCTTGGTCTTGG
CGCCCGACACGAGCGACCACCACTTGGCCATCAAAACCTCGAGCCACAACACCCCATCCAATCATGGACTGTCCAGCAGT
AAAAGCCCCGTCTAGGTTGAACTTGAGCGTATCAGTTTCAGGCGGTTCCCATTTTGCCAAGGGCATGTTTCGTTTTCCCG
GCGCAAACACATGTTCATACTCCAAAGCAGTGCTTCTAATGCGCCGTATAAGCTCCGGGGCTTGCAGCGGTAGCTAGCCG
TCGCACACATTATTGCGCTGGTTCCACCATTGCCACCAGAAGACAATGATCACCGCCCTTCGCCTCTGCACTCCTCGGCA
ATCGGCATCT-----CAATGTCTTCGTCAACGACGCACCGGACAAGCATATCTGGCCGTCGGCCACCGCCGTCGCCTCCA
GCACCACGACCACCTCCTGTTCCTCGACAGATCCGGCAGAAACCGCCTCGTCCTCATCGTACTTCCTACCGGAGCTGATC
CCACTGGTCGCGAGCCGACTGACGACCCTACAGGATTTCTTTGCCCTCCGCGCCACCTGCCGCACCTACCGGGCTCTCCT
CCCGCTGTCGCCGTCCAACCTCGCCTCCCAGGCTCTGCTCCTCCTCGTCCCGCACAAGGTATCTTCCTCGGAAGCCCTCT
TCCACATCCCACTCCACCGCATCCTCCGCTTCCGGCTCCCCCGCACCGCCCTAGCTCAACATGA----------------
-------------------------------------------------------CCCCAGCAATGCCGAATTCGATTCC
TTCGGTTGCCGT--------------------------------------------------------------------
-GTCGCCATCGAGGACAGC------GATGCCATGGGCAGCCACCGCGAGCTCCACATCTGCCACCTCCTCACAGGCGAGC
GAGTCCGCCTGCCAGATGCTCTGAAATACTACTACGAAGGAATCATCTTTGCCGGCGACCTCATTCTCAGCTTTAATCGA
TACCATTACCACAACACCGTCCACTACTGCCGC------------------CACTGTCGAGAGGCGCGGTGCGATGAAGG
CTACAGGTTTCGTGACCCGATTTTCGTGACAGGCACCCTGTACGCATTGATCTATCCAAATCACTGCCTCGCTGTCATCG
AGCTTGACAACAATTCCGTGGTATTGTTGTTTCTTGGAGGTGAACCGAGTGCAGAAATAGTTCAAAATTGTTCGAT---G
TTGAGACTAGCAGAGTGCCGTGGTGAGCTATTGCTCGTTACTGCTGTGAGTTACCCGGTGGGG----TACCATGTTTTCC
AGTGGCAATCTGATAATAGGAAGTGGGTGAGGACTACCACCCTTGGTGGCTGTAGCTTGTTCTTTAATATTCTCCAGTTT
GCAGGTTGCCTTGGTCCGGATCATCCCACAGTTCGAGGGAATTGCTTGTACATCATTAAGTCCAATGGGCAGTGTATCAA
GTATTCTCTGGTTGATGGATCTTCTCATGAACTCGTTGTCGACTACCCAGCAC---------------------GACCAC
GGGCTTGGGTCCTTCCAAGCATTTGTTGATGCAATAAAATCTGTACCAAAACTATACAGAA-GTTCTCAATGTGCATTTG
CTCCCTAGCAACTTGT--TATAATTGCTTAGT---TTA-CGTTTTCTGTCTGTTAATATCAAAATATGTCAAGGAACTCT
TTTGCAACAAATGTGTATATGAACTTGGTATGAATGGACATCCTGCTCACTTCAAATATTTGATAATAATGTACAGAAGG
CCTTTAAATTAGTTGAGCATACTTTACTTATTTCTCTATAACACTGCTTGACGACATCAGCAAATAGTGGAATTAGTATT
TAAGGAATGAATGGAGACTATCACTTGGTAATAATAGAACACATACATATCACAGACCAAGATTGCGATCTAATTAAGCA
AGTCGAATGATCTGATCGAAGACGTGGTAGGCGTGAAAACTGGATGACGCCCTACTGGGGGAAGGGTTAACCTT------
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------------------------------------------------------------------------------GA
ACTCCGTCACGTTCGACCGCCACATGCAAAAGGCTGATGGGTCGTTCAGCTAGTTGGACAATTGGGCAAATCGAATAATA
ATAACGCCAGGCTGTTTTGAGGTTGCCATATCCATTCAGGAGTCAAAAGATGGAGTTTCCATTAAGATTATAGCAGACTA
GTCATCAGCCCTGCTACACATTTCGAATAATTCTATACAACACATACTAGTCAATATATGAATGAGTCTAAATTTAAGCC
CTGCTACCACATGGCGAATGATTCTATATAATGCATACTGGTCATTATATGAACATGTCTAAATTTAATTGGGTATATGA
ATAAATTTAAGTTTGATAGGGTGTATGTTTTCAAGTTTATAATTAAAAGCATAGATCATATTTCTCTAATTATTTGTGGA
ACTTTACACCTATGCTATTTGAAATTGTGTTGTTACCGACTGTTTTTTCAATGTGTTGTAGATGTACGTATGTCATTCAA
TTTGTCTGGTCACTAAATTTGCATTGACCTGAGAAAATTCTTTTCAGATTGATTTGTAGATAAAGATTTCAGTTGCTACT
>chr2B_1
GCCGAGCGCCTACAATGGGTCACACTACACTTGGCGAACCACATTTTAATTTGGAACTTCAGGTCCTCGATGATCGTAGC
ATACGGGGAGGAATCAGCTATCCTCATGTTCATGGCATCAACAAGCAGCTGCGAATCCGTTTCGAAGGCGACTCGCGTGG
CACCCAGCTCCGTTGCAGTTGAAATGGCTGCTGCCAGCGCGTTGATCTCAGCCCCAAAGGCGTCTGTTGCTTGGTCTTGG
CGCCCGGCACGAGCGACCACCACTTGGCCATCAACACCTCGAGCCACAACACCCCATCCAATCATGGACTGCCCTGCAGT
GAAAGTCCCATCTAGGTTGAACTTCAACATATCGGTTTCAGGCGGTTCCCATTTGGGCACGGTCATGTTTCGTTTTCCTG
GAGCAAACACATGTTCATACTCCAAGGCAGTGCCTCTAATGTGCCTTATAATCTCCGGAGCTTGCAGCGGTAATTGCCCA
TCACGCACATTATTGCGTTGGTTCCACCATTGCCACCAGAATGCAATGATCA----------------------------
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>chr3D_1
GCCGAGCGCCTACAATGGTTCACATTACATTTGGCGGACCACATTTTAAGCTGGAATTTCAGATCTTCGATGATCGCAGC
ATGCTGCGAGGAGTCAGCTACTCTGACATTCATGGCATCAACAAGCAGCTGCAAGTCAGTTTCAAAAACGACTCGTGTGG
CGCCCAGCTCGGTCGCAGTCGATATGGCCGCTACCAACGCGTTTACTTCAGCCCCAAAGGAGTCTAGTGCTTGGTCTTGG
CGCCCGGTGCGAGCGACCACCACTTGGCCATCAGAGCCTCGAGACACTACACCCCATCCAATCATGGACTGCCCAACAAT
GAAGGCCCCGTCTAGGTTAAACTTGAGAGTATCAGCTTCAGGCGGTTCCCATTTTGCCAAGGGCATACTTTGTTTCTCCG
GCGCAAACACTTGTTCGTACTCCAAAGCAGTGCTTCTGATTCGCCTTATAAGCTCCGGAGCTTGCAGCGGCAGCTGGCCA
TCACGAACTTTGTTGCGCTGGTTCCACCATTGCCACCAGAAGATAATGATTAGGGCCCTTTGCTTCT-------------
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>chr5B_1
GCCGAGCGCCTACAGTGGGTCACATTACATTTGGCGAACCACATTTTAAGCTGGAACTTCAGATCCTCGATGATCGCAGC
ATACTGCGAGGAGTCAGCTATTCTGACATTCATGGCATCAACAAGCAGCCGCGAATCAGTTTCAAAGATGACTCATGTGG
CA-CCAGCTCCGTCGCAGTCGATATGGCCGCTGCCAACGCTTTGACTTCAGCCCCAAAAGCGTCTAGTGCTTGGTCTTGG
CGCCCGGCGCGAGCGACCACCACTTGGCCATCAGAGCCTCGAGCCACAACACCCCATCCAATCATGGACTACCCAGTAGT
GAAAGCCCCGTCTAGGTTGAACTTGAGAGTATCAGCTTCAGGCGGTTCCCATTTTGCCAAG-----------------CG
ACGCAAACACTTGTTCGTACTCCAAATCAGTGCTTCTGATTCGCCATATAAGCTCCGGAGCT-----------CTGGCCA
TCGCGAACTTTGTTGCGCTGGTTCCACCATTGCCACCAGAAGATAATGATCA----------------------------
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>chr6D_1
GCCGTGCGCCTACATGGGATCACGCTACATTTCGGGAACCACATTTTGAGCTGGAGCTTCAGATCTTCGATGATCACAGC
ATACTGCAAGGAGTCAGCTATTCGGATGTTCATAGCATCAGCAAGCAGCTGCGAATCAGTTTCAAAAACGACCCGTGTGG
CACCCAGCTCCGTCGCAGTCGTGATTGCCGCCGACAACGCGTTGACTTCAGCCCCAAACGCATCCAGTGCTTGGTCTTGG
CGCCCAGCGCGAGCAACCACCACTTGGCCATCAGAATCACGAGCCACCATGCCCCAGCCACTCATGGACTGTCCAGGGAT
GAAAGCCCCATCCAGATTAAATTTGAGAGTATCAGCTTCAGGTGGTTTCCATTTTGCCAAGGGAATGCTTTGCTTCTCCG
GCGCAAACACTTGTTCATACTCCATAGCGGTGCTTTTGATCCTCCTTATGAGCTCCGGAACCTGCAGCGGCAACTGCCCT
TCACGTATTTTGTTGCGCTGGTTCCACCATTGCCACCAGAAGATTATGAT------------------------------
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>chr6D_6
-----GCCCCTACATGGGATCACGCTACATTTCGAGAACCACATCTTGAACTGGAACTTCAGATCTTCAATGATCGCAGC
ATACTGTGAGGAATCAGCTATTCGGACGTTCATAGCATCAGCTAGCAACCGCGAGTCAGTTTCAAAAACGACCCGTGTGG
CACCCAGCTACGTCGCAGTCGTGATTGCCGCCGCCAACGCGTTAACTTTGGCCCCAAACGCATCCAGTGCTTGGTCCTGG
CGCCCAGCGCGAGCAACCACCACTCGGCCATTGATATCACGAGCCACCACACCCCATCCACTAATGAACTGTCCAGGAGT
GAATGCCCCATCAAGATTAAATTTGAGCATATCAGCTTCAGGTGGCCGCCATTTCCCCAAGGGCGTTCTTTGCTTCTCTG
GTGCAAACACTTGTTCATACTCCATTGCAGTACTTCCGACCCGCCTTA-GACCTCCGGAACCTGCAACAGCAACTGTCCT
TCACGGATTTTGTTGCGCTGGTTCCACCATTGCCACCAGAAGA-------------------------------------
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>chr3D_7
------CGCCTACAATGGATCACGCTACACTTGGCGAACCACATTTTGAGCTGGAGTTTCAGATCTTCGATCATCGCAGC
ATACTGCAAGGAGTCAGCTATTCGAACATTCATGGCATCCACAAGCAGCTGCGAGTCAGTTTCAAAAACGACTCGTGTGG
CACCCAGCTCCGTCGCAGTCGTTATTGCCGCCGACAACGCGTTGACTTCAGCTCCAAAAGCATCCAGTACCTGGTCTTGG
CGCCCGGCGCGAGCGACCACCACTTGCCCATCAGAATCGCAAGCCACCACGCCCCATCCATTCATGGACTGTCCAGGAGT
GAAAGACCCACCCAAATTAAACTTGAGAGTATCAGCTTCAGGCGGTTTCCATTTTGCCACTGGCATGCTTCGCTTCTCCA
GCGCAAACACTTGTTCATACTCCATAGCGGTGCTTCTAATCCGCCTTATAAGCTCCGGAACCTGTGGC-GCAGCTTTCCT
TCACGTAACTTGTTTCGCTGGTTCCACCATTGCCACCAGAAGATTATGAT------------------------------
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>chr3D_531
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--------------------------------------------------CACCGCCCCTCGCCTCTGCACT-CTCGGCA
ATCGGCACCTGCGAGCAATGTCTTCGTCAACGACGCACCGGACGGG--TATCTGGCCGTCGGCCACCGCCGTCGCCTCCA
GCACCACCACCACCTCATGTTCCTCCACAGACCCGGCAGAAACTGCCTCGTCCTCGTCGTACTTCCTACCGGAGCTGATC
CCACTGGTCGCGAGCCGACTGACGACCCTACAGGATTTCTTCGCCCTCCGCGCCACCTGCCGCACCTACCAGGCTCTCCT
CCCGCTGTCGTCGTCCAACCTCGCTTCCCAGGGTCCGCTCCTCCTCGTCCCCCACAAGGCATCTTCCTTGGAAGCCCTCT
TCCACATCCCACTCCGCCGCATCCTCCGCTTCCGCCTCCCCCGCACTGCGCTAAGCTATGGCTGCTGCCGCGAAATCCTC
TACATATCCTCTAAATAGCTAAAATATCAGCAGAACCCTCCAAAATCATCTCTCCCACCAGAAAAATTTCCGCTATTTGC
CGCGATTGCCCGCTATGGCGGCCGCAATAGCTGCTGGGAGAGGCCGCGGCGAAATCGTTTCTCCCGCGATCTTAATCTAT
GGTCGGCATCGAAGACAGCGATGCCG------TGGGCAGCCACCGCGAGCTCCACATCTGCCACCTCCTCACAGGCGAGC
AACTCCGCCTGCCTGATCCCCTGAAATACTAC---GAAGGAATTGTCTTTGCCGGCGACCTCATTCTCACCTTTAATCGA
TACCACC------ACAGCGTCCACTACTGCCGCATTGG------GGACAATCACTGGCGTGAGGCGCGGTCCGATGAAGG
CTACAGGTTTCGTGACCTGATTTTCGTGAAAGGCACCCTCTACGCATTGATCTATCCAAATTACTGCCTCGCTGTCGTTG
AGCTTGACAACACTTCCGTGGTATTGTCATATCTTGGAGATGCATTAAGTGCAGAGATAGTTCCGTATTGTTCGAT---G
TTCTGGCTTGCAGAGTGCCGCGGTGAGCTATTGCTCATTGTCTCTGAGTACCGTGCACTCCGG----TACCATGTTTTAC
GGTTGCAA------GAGAGGAAATGGGCGAGGACTACTAGCCTCGGTGGTTGTAGCTTGTTCTTTAATATTCTTCAGTTT
GCTGGTTGCCTTGGTCCCGATCATCCGACAGTTCGAAGGAACTGCTTGTACTTCATTAGGGTCCCTGGTGAGTGTATCGA
GTATTCTTTGGTTGATGGATCTTTGCATAAACTCGCTGCCGACTACCCAGGGCGAGCAA---CGGAGGATTACGGACAAT
TTGCTTGGGTCCTCCCAAGCATTTTATGATGCAATACAATGGGTATCAGAACTGTACAGATCGTTCTCAAGGTAGATTTG
CTTCCCACTGACTTTT--ATACTCACTTGATT---TTA-CATTTTCTATCTGTTACTCAATAAT---ATTTGAAGGGACT
CTAGCAAGAAATGTGTATA-------------------------------------------------------------
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>chr3B_636
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GCACCACCACCACCTCCTCTTCCTCAATAGACCCGGCAGAAACCGCCTCGTCCTCGTCGTACTTCCTACCAGAGCTGATC
CCACTGGTCGCGAGCCGACTGACGACCCTACAGGATTTCTTCGCCCTCCGCGCCATCTGCCGCACCTACCGGGCTCTCCT
CCCGCTGTCGCAGTCCAACCTCGCCTCCCAGGCTCCGCTCCTCCTCGTCCCGCACAAGGCATCTTCCTCGGAAGCCCTCT
TCCACATCCCACTCCGCCGCATCCTCCGCTTTCGCCTACCCCGCACCCCCTTAGCCCACCGCGA----------------
-------------------------------------------------------CCCCAACAATGCCGAATTCCATTCC
TTCGGTTGCCGT--------------------------------------------------------------------
-GTCGCCATCGAAGACAGC------GATGCCATGGGCAGCCACCTCGAGCTCCACATCTGCCACCTCCTTACAGGCCAGC
AAGTCCGCCTGCCCGATCCCCCAAAAGACTAC---GAAGGAATCATCTTTGCCGGCGATCTCGTCCTCACCTTTAATCGA
TACTACC------ACACCGTCCGCTACTGCCGCATTGGAGGCAAGGACAATGACTGGCGAGCAGCGCGGTGCGCTGAAGG
CTACGGGCTTCGTGACCTGATTTCCCTGAATGGCACCCTCTACGCATTGATTTTTCCAAATTACTGCCTCGCTGTCGTCG
AGCTTGACAACAGTTACGTGGTATTGTCGTTTCTTGGTGGTGAATTGAGTGCAGAGACAGTTGAGAATTCTTCAAT---G
TTGAGGCTAGCAGAGTGCCGTGGTGAGCTATTGCTCATTAGTGCTGTTAGGTACCCGGTGGGG----TACCAAGTTTTCC
AGTGGCAATCTGGGGATAGGAAGTGGGTGAGGACTACTGCCCTTGGTGGGTGTAGCTTGTTCTTTAATATTCTCCAGTTT
GCAGGTTGCCTTGGTCCAGATCATCCAGCAGTTCAAGGGAACTGCTTGTACATCATTAAGTACAATGGGCAGTGTATCAA
GTATTCTCTGGTTGATGGATCTTCGCATGAACTCGTTGCCGACTACCCAGGACA---------------------ACCAC
GGGCTTGGGTCCTTCCAAGCATTTGTTGATGCAATACAATTGGTACCAAAACAATACAGAA-GTTCTGGATGTGCATTTG
CTCCCTAGTGACTTGT--TATAATTGCTTAGT---TTA-CGTTTTCTCTCTGCTAATATAAAAATATTTCAAGTAACTCT
TTAGCAACAAATGTGTATATGAACTTGGTATGAATGGACATTCTGCTCACTTCAAATATTTAGTAATAATGTACATAAGG
CCTTTAAATTAGTTGAGCATACTTTACTTATTTCTCTATAACACTGCTTGATAACATCAGCAAATACTGGAATTAGTATT
TAAGGAATGAACGGAGGCTATTACTCTGTAATAATAGAACACATACATATCGCAGAACAAGATTGTGGTCTAATTAAGCA
TGTCGAATGATCTAATTGAAGAAGTAGAACCAAAGTAAAAGATTTGATCTGCATACACTACAAAAAAATATTAACCGTGA
GATATGGTTTTGCATTGATTATCTGTTCATGTAGTTGAATGATTTAGTTACATCCGAATTGCTTTCAGAATTTGCTTTAT
GAAAACTTCTGATTGAAATTGAATTTATTCATAGCTCGTGCCAATTTTCTTTGCTTGATTAGGATATATAGTTCATCAAC
CTAGGCGATTGTTCCACTAAAAAAAACTAGGCTATCATGTCTCGGCATGGTCTCCTTATAAGTTTACGCACTGAAGGCGA
ACTCCGCCTCATTCGATCACCACATGCAAAAGGCTGATGCGTCGTTCAGCTAGTTGGATAATTAGGCAAATCGAGTAATT
GTAACGTCGGGCTGTTTTGAGGTTGCCAAATCCCTTCAGGAATCAAAAGATGGAGTTTCCATTAAGATTACAGCAGACTA
GTCACCAGCCCTGCTACACATGGCCAATAATTCTATATAACACATACTAGTCAATATATTAATGAGTCTAAATTTAAGCC
CTCCTACCACATGGCCAATAATTATATATAACACATACTAGTCATTATATGAATAAGTCTAAATTTAGTTGGGCATTTGA
ATAAACTGAAGTTTGACAGGGTGTATATTTTCAAGTTT------------------------------------------
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>chr3A_639
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---CCACCACCACCTTCTCTTACTCGATAGACCCAGAAGAAACCGCCTCGTCCTCGTCGTACTTCCTACTGGAGCTGATC
CCACTTATCGCGAGCCGGCTGACGACCCTACAGGATTTCTTCGCCCTCCGCGCCACCTGCCGCACCTACCGGGCTCTCCT
CCCGCTGTCGCCGTCCAACCTCGCCTCCCAGGCTCCGCTCCTCCTCGTCCCCCACAAGGCATCTTCCTCGGAAGCCCTCT
TCCACATCCCACTCCGCCGCATCCTCCGCTTCTGCCGCCCCTGCACCACCCTAGCCCAACAAGA----------------
-------------------------------------------------------CCCCAGAAACACTGAATTTGATTCC
TTCGGTTGCCGT--------------------------------------------------------------------
-GTCGCCATCAAAGACAGC------G------TGGCCAGCCACCGTGAGCTCCGCATCTGCCACCTCCTCACATGCGAGC
GAGTCCGTCTACCCGATCCCTGGAAAGGCTAC---GAAGGAATCATCATTACCGGCAACCTCGTCCTCACCTTTAATCGA
TACCACC------ACACCCTCCATTATTGCCGCATTGG------GGACAATCACTGGCGGGAGGCGCGGTGCGATGAAGG
CTACAGGTTTCGTGACCTGATTTTCGTGAAAGGCACCCTCTACGCATTGATCTATCCAAATTACCGCCTCGTTGTCGTTA
AGCTTGACAACAATTCTGTGGTATTCTCGGATCTTGGAGATGCATTAAGTGCAGAGATAGTTCCGTACTGTTCGAT---G
TTCTGGCTAGCGGAGTGCCGCGGTGAGCTATTTCTCATTGTCTCTGAGTACCGTGCACTCAGG----TACCATGTTTTCC
GGTTGCAA------GAGAGGAAGTGGGTGAGGACTACTAGCCTCGGTGGGTGTAGCTTGTTCTTTAATA-----------
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>chr3D_956
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-----------------------------------------------------------------------TTCCACTCC
TTCGGCTGTCGC--------------------------------------------------------------------
-GTCGCCATACAAGGCATGAGC------GCCGGCGCCAGCCGCCCCGAGCTCCGCATCCGCCACCTCCTCACAGGTGAGC
GAGCCCGCCTGCCTGATCCCCCGAAATGCGTT---GGAGGTATTCTCTTTTCCAATGACCTAATCCTTGCCTTCACGCCA
TGGCACC------GCGACATCTACTACTGCCGCATTGG------GGATGCTCAGTGGCAAGCGGCGCGGTGCGATGAGGG
CTACAACCTTCACAGTCTGATGTTCGTGAAAGACACCCTCTATGCGTTGATTTATCCAAATTATCGTCTTGCTGTTGTCG
ATCTTGACAACAATTCCGTGGTATTGTCGTTTCTTGGGGATGAACTCAGCGCACATACAGTACCAGATGGTAATTTGGCG
GACTGGCTCGCAGAGTGTCATGGTGAGCTATTGCTAATTATCAGAAGGAGG---------CTG----TACCGTGTGTTCC
AGTGGCAATCTAAGGAGAGGAAGTGGGCGAGGACACATAGCCTTGGTGGTTGTAGCTTGTTCTTTAATATGCATGAGTTT
GCTGGTTGCCTTGGTCCAGATCATCCGGGAGTTCGAAGAGACTGCTTGTACTTTACTGGAAGCTTTGGGAACTGGAGCGA
GTATTCTTTGGTTGATAGATCTTTGAATGAAATTGTTGCCGAGTACCCAGGGCAATCAGTATCGAAGGATTTTGTATCAC
TGGCTTGGGTCCTTCCAAGCATTTGTTGACGCAGTACAATGCGTATAAGAACTGCCCAGAA-GTTCTCAAGGTACATTTG
CTCCCTTGAGACTATTGTTAATGGATTAGAGT---TTTTTATTTTATGTTTATTAATCAAAATA---TTTATGTGACTCT
TTAGCAACAAATGTATATGAACTTGT-GTATGAATGGACACCCTGACTCA------------------------------
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>chr3D_956
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-----------------------------------------------------------------------TTCCACTCC
TTCGGCTGCCGC--------------------------------------------------------------------
-GTCGCCATACAACGCATGAGC------GCCAACGCCAGCCGCCCCGAGATCCGCATCCGCCACCTCCTCACAGGTGAGC
GAGCCCGCCTGCCCGATCCCCCTGAATGCGTT---GGAGGTGTTCTCTTTTCCGACGACCTAATCCTCGCCTTCACGCCA
TGGCACC------GGGACATCTACTACTGCCGCATTGG------GGATGCTCAGTGGCAAGCGGCGCGGTGCGACGAATG
CTACCACGTTTACAGTCTGATGTTCGTGAAAGGCACCCTCTACGCGTTGATTTATCCAAATTATCGTCTTGCTGTTGTCG
AGCTTGACAAGAATTATGTGGTATTGTCGTTTCTTGGTGAGGAACTTAGCCCACAGACAGTTCCAAAAAGTTCGGT---G
GCCTGGCTCGCAGAGTGTCAGGGTGAGCTAATGCTAATTATCAAAATCAGG---------TTG----TATCGTGTTTTCC
AGTGGGGATCCGGGGAAAGGAAGTGGGCGAGGACACATAGCCTTGGTGGTTGCAGCTTGTTCTTTAATATGCATGAGTTC
GCTGGTTGCCTTGGTCCAGATCATCCGGGAGTTCGAAGAGACTGCTTGTACTTTACTGGAAGCCTTGGGAACTGGAGCGA
GTATTCTCTGGTTGATAGATCTTTGCATGAAATTATTGCTGACTACCCAGGGCAAGCAGTACGGAAGGATTTTGTGCCAC
TGGCTTGGGTCCTTCCAAGCATTTGTTGATGCAGTACAATGTCTATAAGAACTGCCTGGAA-GTTCTCAAGGTACATTTG
CTCCCCTGTGACTCTTGTTAATGGATTAGTTCTGC----TTTTTTACATTTGTTAATCAAAATA---CTCAAGGGGCTTT
TTAGCAACAAATGTATTTGAAGTTGT-GTATGAATGGATATCCCGCT---------------------------------
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>chr3B_962
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-----------------------------------------------------------------------------TCC
TTCGGCTGTCGC--------------------------------------------------------------------
-GTCGCCATACAAGGCATGAGC------GCCAGCGCCAGCCGCCCAGAGCTCCGCATCCGCCAGCTCCTCACAGACGAGC
GAGCCCGCCTGCCCGATCCCCCGAAATGCGTT---GGAGGTATTCTCTTTTCCAATGACCTAATCCTCGCCTTCACGCCA
TGGCACC------GCGACACCTACTACTGCCGCATTGG------GGATGCTCAGTGGCAAGCGGCGCGGTGCGATGAGGG
CTACAACATTCACAGTCTGATGTTCGTGAAAGGCACCCTCTACGCGTTGATTTATCCAAATTATCGTCTTGCTGTTGTCG
AGCTTGACAACAATTCCGTGGTATTGTCGTTTCTTGGGGATGAACTTAGCGCACATACAGTACCAGATGGTAATTTGGCG
GCCTGGCTCGCAGAGTGTCATGGTGAGCTATTGCTAATTATCAGAAGGAGG---------CTGTACGTACCGTGTGTTCC
AGTGGCAATCCAAGGAGAGGAAGTGGGCGAGGACACATAGCCTTGGTGGTTGTAGCTTGTTCTTTAATATGCATGAGTTT
GCTGGTTGCCTTGGTCCAGATCATCCGGGAGTTCGAAGGGACTGCTTGTACTTTACTGGAAGCTTTGGGGACTGGAGTGA
GTATTCTTTGGTTGATAGATCTTTGCATGAAACTGTTGCCCACTACCCAGGGCAATCTGTATAGAAGGATTTTGGATCAC
TGGCTTGGGTCCTTCCAAGCATTTATTGATGCGGTACAATGCGTATAAGAACTGCCCAGAA-GTTCTCAAGGTACATTTG
CTCCCTTGTGACTATTGTTTATGGATTAGAGT---TTT-CATTTTATGTTTATTAATCAAAATA---TTTATGTGACTCT
TTAGCAACAAATGTATATGAACTTGT-GTATGAATGGACATCCCGACTCACT----------------------------
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>chrUn_1006
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------------------------------------CAGCCGCCCCGAGCTCCGCATCCGCCACCTCCTCACAGGCGAGC
GAGCCCGCCTACCCGATCCTCCGAAATGCGTT---GGAGGTATTCTCTTTTCCAATGACCTAATCCTTGCCTTCACGCCA
TGGCACC------GCGACACCTACTACTGCCGCATTGG------GGTTGCTCAGTGGCAAGCGGCGCGGTGCGATGAGGG
CTACAACATTCACAGTCTGATGTTCGTGAAAGGCACCCTCTATGCGTTGATTTATCCAAATTATCGTCTTGCTGTTGTCG
AGCTTGACAACAATTCCGTGGTATTGTCGTTTCTTGGGGAAGAACTTAGCGCACGTACAGTACCAGATGGTAATTTGGCG
GCCTGGCTCGCAGAGTGTCATGGTGAGCTATTGCTAATTATCAGAAGAAGG---------CTG----TACCGTGTGTTCC
AGTGGCAATCCAAGGAGAGGAAGTGGGCGAGGACACATAGCCTTGGTGGTTGTAGCTTGTTCTTTAATATGCATGAGTTT
GCTGGTTGCCTTGGTCCAGATCATCCGAGAGTTCGAAGAGACTGCTTGTACTTCACTGGAAGCTTTGGGAACTGGAGCAA
GTATTCTTTGGTTGATAGATCTTTGCATGAAATTGTTGCCAACTACCTAGGGCAATCAGTATCGAAGGATTTTGTATCAC
TGGCTTGGGTCCTTCCAAGCATTTGTTGATGCAGTACAATGCGTATAAGAACTGCCAAGAA-GTTCTCAAGGTACATTTG
CTCCCTTGTGACTATTGTTAATGGATTAGACTCCCTTTGCATGTTATGTTTATTAATCAAAATA---TTTATGTGACTCT
TTAGCAACAAATGTATATGAACTTGT-GTATGAATGGACATCCCGACTCA------------------------------
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>chrUn_1171
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-----------------------------------------------------------AGTGGCGTGGTGCGACGAAGG
CTACCACCCTTACAGTCTGATGTTCGTGAAAGGAACCCTCTACGCGTTGATTTATCCAAATTACCGTCTTGCTGTTGTCG
AGCTTAACAACAATTCTATGGTATTGTCGTTTCTTGAGGATGAACTTAGCGCACGGACAGTTCCAGATAGTTCGGT---G
GCCTTGCTCGCAGAGTGCCATGGTGAGATATTGCTAATTGTCAGAACCAAG---------TTG----TACCATGTTTTCA
AGTGGCAATCCGGGGAGAAGAAGTGGGCGAGCACTGACAGCCTTGGTGGTTGTAGCTTGTTCTTTAATAGGCATGAGTTT
GCTGGTTGCCTTGGTCCAGATCATCCAGGAGTTCGAAGAGACTGCTTGTACTTTACTGGAAACTTTGGGTACTGGAGTGA
GTATTCTTTGGTTGATAGATCTTTGCATGAAATTCTTGCCGACTACCCAGGGAGACCACTACGGGAGGATTGTTTTCCAC
TGGCTTGGGTCCTTCCAAGCATTTGTTGATGTAGTACAAGGTGTATAAGAACTGCCCAGAA-GTTCTCAAGGTACATTTG
CTCCCTTGTAACTTGT--TAATGCATT--AGT---TTTGGAGTGTATGTTTGTTAA-----AAT---AGTCAAGGGTTCT
TTAGCAACAAATGTATATGAA-----------------------------------------------------------
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>SNPs
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------------------------------------------------------------S--S----------------
------S-------------------------------------------------------------------------
S-------------------------------------------------------------------------------
---------------------------------------------S------------S----------------S---S
----S-------------------------------------------------------------------S-------
-------S-----------------------------------SS-SS--------------------------------
-------S-----------------------S-----------------------S------------------------
-----------------------------------------S--------------------------------------
-----------------------------------S-----------------------S--------------------
---------------S------------------S--------------------S-----S------------------
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------------S-------------------------------------------------------------------
-------------S---S--------------SSS----------------------------------S----------
-----SSSSSSSS-------------------------------------------S-----------------------
-----------------S-----------S---------S---------------------S--------------S---
---------------------------S-----------------S---------S------------------------
-----S------------------------------S---S---------S-----------------------------
-------------SS----------------------------------S------------------------------
-----------------S--------S--------------S-------------------S------------------
------------------------S-------------S-----------S-----------------------------
------------------------------------S---S---------------------------------------
--------S--------------------------------------------------S-------S------------
--S----------------------------------------------------------SS------------S----
---------------------------------------------------SS-------------S-------------
-----------S----S----S---SS------------------------S----S--------S-S------------
S------------S--S-----S--S-S-SSSSS-S---SSSSS---SSSS-SSSSSSSSS--SSSSSS-SSSS------
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------S-S-S-----S-S--------------------S------------------S----S----------S----S
S-----S-S-------------------S----S-------S----------------------------S---------
----S----------------SS-S------------S---------------------S--------------------
--S------------S---S---S-------SS------S-------------S-S-----------S-----S--S---
-----S-S--------S---------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_942
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-------------------------------------------CACCGCCCTAGCTCAACAT------------------
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>reverse_2647
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------CCAGGCTGTTTTGAGGTTGC------------------------------------------------------
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