>input_sequence_72155
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------ATGTTTACTCCAACATCATCGGCTCGAGCGCTGGGGAAATCTCTGGTGGTGCCGGCA---GACATC
TCGACGGCCATGGTGACCACCGCCGCAGCAGCGGGCAAGGCGAAGATGACGGCCCTGGCGATCACGGCGGGAGAGAGCAT
GGCGGAGATGAAGAAGAATCTGGCAGTGAACATCGCCGCCGCCGCCGACGACAAAAACACCC---GCAAGGAGATCGTTG
TTGCCGCAGCACCAGCACTGCCACCGGCACCCACACGGCCCAACATCTTCGCCGTGATCACCAGGCTCGCCGACCGTCCC
TTCCTCAGCGCTGACGCGTCGGGGAAGCTGACCACACTCGGGAAGAAGCTGGCGAAGAAGCTGACGGCGGAAGCGGCCCG
CACCATGATCAAGATGGACGTGAAGCAGCTGGTGGACGACCTCGACGCGGCGCTCCAGGCGGCCGAGCTCGCGCTGGACG
ACATCGAGCACCAGCACCTGTGCCTCCAGGCGCTCATCATGTCGCACCAGGACGACAAGAAGAACCTGGCGAGCAAGCTG
CGGTTCGGCCTCAGGCGCTCCCGCATGATGCTCCGGATCGCGAAGCGCCAGGACGAGGTCGAGACCATCGTCAACAAAGC
GTACCGCCGGGTCGTCGGGTCCAGGAAGAAATCCAAGACGCCAAAATATTAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>chr2D_1_TraesCS2D01G045000
AAACTTACATGATGAGATTTCTTCACGGAGGTGTGAGCTGAGCCTTGCACACATGCTAGATGCAAGAAGAGTTGCAAGAT
TGTGACATTAACTAGTGCTTCGGCATGTGAGAACTGGGAAGTGATGATTAATCAGGGTAGTATTGTAGCAAGCACTAGCA
GGCTGCAGGCGTGAGGTGTGATATTATTTCTGCCGGTTCGCATCAGCATGTGCAAATCTGTATTCAGTTTCTGTATACAG
TTCGTCAGCCTGAAACCATAGCATTAGCATAGCAGCAGCCGTTCTACTGAGCCTGAACTAGAAGACAAGTACGAATAGTT
GGGTGTTGTTGCGCGGCAATCAGAGCAGAGCACCTGATGAATCCGGAGAGTGGGAGCTGAGCATTCACCTTCTGGAGGCG
CCCGGCGGCGAGGTACGGACGGGCGAGATCCGATCTGGACTCTCAACCCCGTCGCGAGAGAGACGGAAGGGGGCCGAAAG
CTCGCGAGGAAGCAAAGCTGAGTGGCGCTGGTATAGTAGAGGCACCACGGTAAAAGGCGCCCGGCGGAGCGACGGCCGGC
GGTGGAGGTGTCCGGAGCGGCGGATTGGGCGGCAGTGCCTCCGCGAGTCTC-------------TCTGTTCTTTTTTAGA
AGACCTCG------------------------------------------------------------------------
----------------------------GCAAACGCGAGCAAGCAGCTCGCCCGGCCCATCCCGG----CCAATGGACCG
GTCCA--CATTGGGGAATTTGCAGCCCAT-CTGATCATGGGCTTTTATTTATGTTTGGGCACGCTACTGGGTAGTAATAC
GGGCCGGAGGCACGAAAGAGGTGGTGT--------CGAATCGGACAAGAGACGAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GACCTGCGTTTGGTAATTTGGTACTGCCGTAG
TCGGATCGGGAATCCTAGCGATCGAGGCGCACACCAGGTCCAACTCAACATACACAGGTCCTTCGATGCTATATATA---
-CGCACACCCAGCACGTCGTGACTCGTTAGTTCTTTCAGAAAGACGTTTGCTCC---------TGCTACTACTTCCTCGG
AGAAGAAGTAGAAGATGTTTACTCCAACATCATCGGCTCGAGCGCTGGGGAAATCTCTGGTGGTGCCGGCA---GACATC
TCGACGGCCATGGTGACCACCGCCGCAGCAGCGGGCAAGGCGAAGATGACGGCCCTGGCGATCACGGCGGGAGAGAGCAT
GGCGGAGATGAAGAAGAATCTGGCAGTGAACATCGCCGCCGCCGCCGACGACAAAAACACCC---GCAAGGAGATCGTTG
TTGCCGCAGCACCAGCACTGCCACCGGCACCCACACGGCCCAACATCTTCGCCGTGATCACCAGGCTCGCCGACCGTCCC
TTCCTCAGCGCTGACGCGTCGGGGAAGCTGACCACACTCGGGAAGAAGCTGGCGAAGAAGCTGACGGCGGAAGCGGCCCG
CACCATGATCAAGATGGACGTGAAGCAGCTGGTGGACGACCTCGACGCGGCGCTCCAGGCGGCCGAGCTCGCGCTGGACG
ACATCGAGCACCAGCACCTGTGCCTCCAGGCGCTCATCATGTCGCACCAGGACGACAAGAAGAACCTGGCGAGCAAGCTG
CGGTTCGGCCTCAGGCGCTCCCGCATGATGCTCCGGATCGCGAAGCGCCAGGACGAGGTCGAGACCATCGTCAACAAAGC
GTACCGCCGGGTCGTCGGGTCCAGGAAGAAATCCAAGACGCCAAAATATTAATTTTTTCCTCAGTTATTGAACCTGATGA
ACATACGTACTCTTGTGTGGCGTGCTACATATTCTCATGTGGTACGTACTATGTAGAAGTGTCTCGTCATGATGAAAAAT
ATCTTCTTTTTTTTCAAAGCTATTGATCTATTCATCATCGATCATGACC-AAAAATATGTTATATGTACTA-GCTAGTGG
TAATTTCCGAATTAAGGCGTGTCCGACTGCGATCTGGACGCACCTCCACGTTACCTACGTATTGCGGTTGTGTTTGGTGT
AGTATAAATCTTGTTTTCTCAACTTGTTTTTGTCAATATTTGTGATTGTTTGACTTGTTTTT-T-ACCAGTGTATTTATT
ATGTGGGTAGAAACAGTTTCTTTAAAACACATCACATATGTAGACGCTTACAACAACACACATATACTCATCCCTAT-GG
ATACACGCACG-TAACCTCGTCCTCGTAGGCGATGGACATGCCATACCACACCATTCCACGACAATAAACCTGAACATCC
AAACGAGTCTTGGTTGGCATAGAAGCAATCTTTTATGGGGAGACACTCTCTCACAATTGTACTGGATG--------GGAG
CGAACAAACCTCTTAAAATAAACTACATGTGATGAGTAGAGGCCGAAGGACATACAACTTTGGAGAAGTGTTGAAATCAA
CCGGTTGATCCATCAGCAAACCCCCTCGTCCTATCGACATGTGTCTCGCGTGGGCCCCAACTACAAGCACGCCTTATCCC
TTTTCCCCCTTTCCCCTTTCTTCTACCTTCGTCCTCGCCTCACATTCATCACGAATCCATCTCCTTCCACCTCTCGTGCT
TCCCTCTTTTTTGCCTTCACGGCCCCGAGCGGAGCCGTGCTGCGAGCCCGGCGTGGCGGAGTTGGGAGTGCTCGATCTCG
CCGATGCTGCAACCAGTCGGAGCCCCACCGAGCCATGATGTCACGATGAAGCTACAACTTGCCGCCGTCAAGGCCATCCC
GTCGGTGCTGCAATGAAGCTACTATG
>chr2A_95
GTGCTTTGA-----------------------------------------------------------------------
-----------------------CATGTGAGAACTGGGAAGTGATGATTAATCAGGGTAGTGTTGT--------------
------AGGCGTGAGCTGTGATATTGTTTCTGCCGGTTTGTATCAGCATGTGCCGATCCGTA------TTCTGTATACAG
TTGGTCGTCCTGAAACCATAGCATG------GCAACAACCGTTCTAGACA-----------------------AATAATT
GGGTATAGTTGAACCGCAATCAGGGCACACCACGGATAA-----GGAGAGTAGGAGCTGAGCATTCACCTTCTGGAGGCG
CCCGGCGGCGAGGTGCGGACGGGCGAGATCCGATCTGCAGTCTCAACCCCGTCGCGCGGAAGACGGACGGGGGCCGAAAG
CTTGCGATGAAGAAAAAATGAGTGGCGCTGGTG-----GAGGCACCACGGTTGAGGGCGTCCGGCGGATCGACGGCCGAC
AGTGGAGGTGGCC--------------GGCGGCAGTGCCTCGGCGAGTCTGTGTAGAGAGAGATTCTTTTTTTTTCTAGG
AGACTGTGTAGAGAGAATTTGTTTTTTTGAGACACTGTGTATAGAGAGATTTTTTTTAGGGCTCTGTGTATAGAGAGATA
TGCGTGCGTGTGGGGCTGTGGGAAACACGCAAACGCGAGCAAGCAGCTGGCCCAGCCCATCCCGACCGACCAATGGACCG
ATCGTTCCATTGGGGAATTTGCAGCCCCTGCTGATAATGGGCTTTTGCATGTGTTTGGGCCCAGTACTGAGTAGTAATAC
GGGCCGGAGACACGAAAGAGGTGGTGTAATCCGATCGGATCGGACAAGAGACGACCCGTGTTTGTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCCGTGTTTGGTAACTTGTTA------TAG
TCGGATCGGGAATCCTACCGATGGAGGCGCACACG---------------TACAGAGGTCCTTCGATGCTATATATATAT
ACGCACACCCAGCACGTCGTGACTCGTGACTTTTTTGAGAAGATCGTTAGTTTGTACAGTACGTGCTACTACATCCGCAC
AC-AGAAGAAGAAGATGTTTCCTTCAACATCATCGGCTCGAGCGCTGGGGAAATCTCTGGTGGTGCCGGCGGCGGACATG
TCGTCGGCCATGGTGACCACCGCCGCGGCAGCGGGCAAGGCGAAGATGACGGCCCTGGCGATCACGGCGGGAGAGAGCAT
GGCGGAGATGAAGAAGAATCTGGCAC---CGACCATCGCCGCCGCCGACGAGAAAAACAACACCGGCAAGGAGATCGTTG
TCGCCGCAGCACCAGCACTGCCACCGGCACCCACACGGCCCAACATCTTCGCCGTGATCACCAGGCTGGCCGACCGCCCC
TTCCTCAGCGCTGACGCGTCGGCGAAGCTGACGACGCTCGGGAAGAAGCTGGCAAAGAAGCTGACGGCGGAGGCGGCCCG
GACCCTCATCAAGATGGACGTGAAGCAGCTGGTGGACGACCTCGACGCGGCGCTCCAGGCGGCCGAGCTCGCGCTGGACG
ACATCGAGCACCAGCACCTGTGCCTCCAGGCGCTCATCATGTCGCACCAGGACGACAAGAAGAACCTGGCGAGCAAGCTG
CGGTTCGGCCTCAGGCGCTCCAGCATGAAGCTCCGGATCGCCAAGCGCCAGGACGAGGTCGAGACCATCGTCAACAAGGC
GTACCGCCGGGTCGTCGGGTCCAAGAAGAAATCCAAGACGCCAAAATATTAATTTTTTCCTCAGTTATTGAACCTGATGA
ACATACGTACTCTTGTGTGGCGTGCTATATATTCTCGCGTG----GTACTATGTAGAAGTTTCTCACCATGATGAAAAAT
ACC-----TTTTTAAAAAGCTTTTAATCTATTCATCATCGATCATGACAAAAAAATATGTTATATGTACTA-GCTAGTGG
TAATTTCCGAATTAAGGCGTGTCCGACTGCGATCTGGACGCACCTGCACGTTACCTATGTATTGCGGTTGTGTTTGGTGT
AGTATAAATCT-------------TGTTTTTGTCTATATTTGTGATTGTTTGACTTGTTTTT-TTACCGGTGTACTTATT
GTGTGGGTAGAAACAGTTTCTTTAAAACACATCACATATGTAGACGCTTACAACAACATACATATACTCACCCCTAT-GG
ATACACGCACGTTAACCTCGTCCTCGTAGGCGATGGACACGCCATACCACACCATTCCACGACAATAAACCTGAACATCC
AAACGAGTCTTGGTTGGCATAGAAGCAATCTTTTATGGGGAGACACTCTCTCACAATTGTACTGGATG------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>chr2B_929
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ACGTCGTGAGTCGTTAGTTCTTTCAGAAACACGTTTGTTCC---------TGCTACTACTCCTCGAT
CGGAGAAGAAGAAGATGTTTACTTCAACATCATCGGCTCGAGCGCTGGGGAAATCTCTGGTGGTGCCGGCA---GACATG
TCGTCGGCCATGGTGACCACGGCCGCGGCAGCAGGCAAGGCCAAGATGACGGCCCTGGCGATCACGGCGGGAGAGAGCAT
GGCGGAGATGAAGAAGAATCTGGCAGCAGCGAACATCGCCGCCGCCGACAACAACAACAACACCTGCAAGGACATCGTTG
TTGCCGCAGCACCAGCGCTGCCACCGGCACCCACACGGCCCAACATCTTCGCCGTGATCACCAGGCTGGCCGACCGCCCC
TTCCTCAGCGCGGGCGCGTCGGGGAAGCTGACGACGCTCGGGAAGAAGCTGGCAAAGAAGCTGACGATGGAGGCGGCCCG
CACCATGATCAAGATGGACGTGAAGCAGCTGGTGGACGACCTCGACGCGGCGTTCCAGGCTGCCGAGCTCGCGCTGGACG
ACATCGAGCACCAGCATCTCTGCCTGCAGGCGCTCATCATGTCGCACCAGGACGACAAGAAGAACCTGGCGAGCAAGCTG
CGGTTCGGCCTCAGGCGCTCCCGCATGAAGGCCCGCATCGAGAAGCGGCAGATCGAGGTCGAGGCCATCGTCAACAAAGC
CTACCGCCGGGTCGTCGGGTCCAAGAAGAAGTCGAAGTCGCCAAAATATTAATTTTTT-CTCAGTTATTGAACCTCATGA
GCATACGTACGCTTGT--------------------------------------ACAAGTCTCTCCCTATGACGAAAA--
---------------------------------------------------AATATATTTCATCTGTACTATGCTAGTGG
TTATTTCCGAATTAAATCTTGTTTTTTCGA--------------------------------------------------
---------CT-------------TGTTTTTGTCTATATTTGTGTTTGTTTGACTTGTTTTTCTTACTAGTGTACCTATT
ATGTGGGTAGTAACAGTTTATTTAAAACACATCACATACGTAGACGCTTACAACA-----CATATATTCACCCCTATGGG
ATACGCGCACG-TAACCTCGTCCTCGTAGGCGATGGACACACCATTCCACACCATTCCACGACAATAAACCTGAACATCC
AAACTAGTCTTAGTTGGCATAGAAGCAATCTTTTATGGGGAGACACTCTCTCACAATTATACTGGATGATTGTAGGGGAG
CGAACGGACCTCTTAAAATAAACTACATGTGACGAGTAGAGGCCGAAGGATCTACACCTTT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>SNPs
SSS---SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--------------------------------------S----SSSSSSSSSSSSSS
SSSSSS---------S---------S------------S-S------------SS---S---SSSSSS------------
--S---SS----------------SSSSSSS---S--S--------SSS-SSSSSSSSSSSSSSSSSSSSSSS----S--
----S-S----SS-S--------S---S-S---SSSSSSSSSSS-------S----------------------------
--------------S----------------------S-S----------------S-SS-------S------------
--S----S----S---SS--------------SSSSSS-------------SS-S----S--------S---------S-
S---------S--SSSSSSSSSSSSSS--------------S--------S----------------S--S----S---S
----SSS-------------------------------------------------------------------------
------------------------------------------------S----S----------S---------------
S--SS----------------------S-------S----------SSS-S---------S-SS-----S----------
---------S---------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S-S---------S---S--SSSSSS---
-----------------S----S-----------SSSSSSSSSSSSSSSS----S-------------------------
------------------------------------------S-------S-------------------------S-SS
--S-----S--------------S-------------------------------------------------------S
---S----------------------S-----------------------------------------------------
--------------------------SSSSS-S-SS-----------------------S-S------------------
-------------------------------------------------------------------S--------S---
--------------------------------S--S-----------------S-----------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
-----------------------S--------------------------------------------------------
---------------------------S--------SS---SSSS---------------S----SS-------------
-S-SSSSS-----SS------S--S-----------------------S-------------------------------
---------------------------------------------S-----------S----------------------
-----------SSSSSSSSSSSSS----------S---------------------------------------S-----
----------------------------------------------------------S-----------S---------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
-----SS-------------------------S-----------------SS----S----SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_918
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CACGAAAGAGGTGGTGTCGA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>reverse_2738
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAACCCCCTCGTCCTATCGA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
