>input_sequence_72138
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------------------------------ATGGCAATGGCATTGCAGCTCGCCATCCAATCACTCGCCGCAAGCCTCTC
CCGCTCTCCTAACAAACCCGCCACCAAGCCCCCGAGCAATGGCCACCACCACCCGCAGGAACCAACCGGCAGTAGCAGCT
GCAGCGGCAGAAGGAGCCTAGCGGCGGCGGCAGCGGCGACC------GGCGCGGCGCTCCTCGCGTCCCAGCTGCTGCCG
CCGACGGCGGGCATCGCAGGCGCGTTCGACCTCGACCTCCGGATCACCATCCCGGAGCAGTCGAGCGAGGAGGCCGAGGC
CGTGGTGAGGACGCACGCGAGGAACCTGGTGCGCGTCAAGCAGTTCATTGACGCCAGGTCGTGGCGGGAGCTGCAGACGG
CGCTGCGGGCCAGCGCCGCCAACCTCAAGCAGGACCTGTACGCCATCATCCAGGCGAGGCCGCCGGGCCAGCGCCCCGAG
CTCCGGAGGCTCTACTCCGACCTCTTCAACAACGTCAGCAGAGTAGGGGATCGCACACAAATCAATCCGCCTTTTGAGCC
TCTGGCATTGCTCATGGCGCGCTGACATTGCTCTGCTCTTGTGCGCGCAGCTGGACTATGCGGCCAGAGACAAGGATGAG
CTCCAGGTGCAGGAATGCTACGGCAACATTGTGGCCGCCATTGACCAGATTTTTGCCAGAATCATGTAG-----------
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>chr2D_1_TraesCS2D01G374900
ATCACCACACAATCATATCTATACATGTGAGCATAGAATTGTCATATAACGCAGTGAGCCAA--ATATCTCCGGGAGCCA
TCTCACTCACACATGCTGCGGAAAC-CCTATGGCAGAGGTCGTTAGTGACAACAGGGTCGAGAACTCCATGGCCGCCACA
TGCCATAGCCGTACCATCCCAGGGTCGCTGCTACACATCTTCGCGTCGCCGTTGTCATTGCGGCTTCGCCACTGCCACCA
TCAACCAGCTGCCAAAGACACCATTGTCGGATTTAGGCATCGGAAGCCCATCACTACACACAACCACCCACACCGTCCAT
TGTTGCCCACGCAGCACGACCACCACCTAGGGCACTCGGAGTCCTCGCCTCGACATTCATGCTCCATCGACGGTGTCGCG
CCATTCTGGGTTGTCGTGCCTCGCGATTGGAGAGCTCCCCTCACGAGAGATTCACCGCACGAGAAGGCATACCTACCAGC
GGTGACAGCTGGGGGAGAGAAGGAGACAACCAGGTTTCGTGGGAGATGCGGAAGATGGGTTGTTTCCCTAGGTTGCATAC
TATTAATAGATTAGAGGATTTTTCTTAAA-AAGAACAATTAGACCAT--CCGGAGATGCTCTGATGGAATATGACACGCG
TTCTAGTATGTATCGGAGGAAAAGAATGGGAGCAACATCGGACAATTCATCTTCTTTTTTCTTTGAAACAATGAGCCTCT
TTGTCGATTTTCATTAAAGAAACCACCATCAAGTTTTACAAAGGTTATAGCAAAACAGGGAAACACACCCAACTACAAGT
GAACAACAAACCA-------------------------------------------------------------------
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----------------------------------------------------------------------------GCAA
TTCAGTCCAAAAAAAAAACCAGCAACTAAACCTAAACCCATGGCAATTCGTCTAAACAGCAGACGACCGCCAGATTAGCT
CCTGGCGAACGTGACGAACCTTATCCTCGGAATACATGGCTACTATGCTGTGCATACCTGAACCCATGGAGAACCGAACA
AGATTCCACC-AAGGTGGAAAGGGTCCGCCATGGCAATGGCATTGCAGCTCGCCATCCAATCACTCGCCGCAAGCCTCTC
CCGCTCTCCTAACAAACCCGCCACCAAGCCCCCGAGCAATGGCCACCACCACCCGCAGGAACCAACCGGCAGTAGCAGCT
GCAGCGGCAGAAGGAGCCTAGCGGCGGCGGCAGCGGCGACC------GGCGCGGCGCTCCTCGCGTCCCAGCTGCTGCCG
CCGACGGCGGGCATCGCAGGCGCGTTCGACCTCGACCTCCGGATCACCATCCCGGAGCAGTCGAGCGAGGAGGCCGAGGC
CGTGGTGAGGACGCACGCGAGGAACCTGGTGCGCGTCAAGCAGTTCATTGACGCCAGGTCGTGGCGGGAGCTGCAGACGG
CGCTGCGGGCCAGCGCCGCCAACCTCAAGCAGGACCTGTACGCCATCATCCAGGCGAGGCCGCCGGGCCAGCGCCCCGAG
CTCCGGAGGCTCTACTCCGACCTCTTCAACAACGTCAGCAGAGTAGGGGATCGCACACAAATCAATCCGCCTTTTGAGCC
TCTGGCATTGCTCATGGCGCGCTGACATTGCTCTGCTCTTGTGCGCGCAGCTGGACTATGCGGCCAGAGACAAGGATGAG
CTCCAGGTGCAGGAATGCTACGGCAACATTGTGGCCGCCATTGACCAGATTTTTGCCAGAATCATGTAGTTTTTGCACTG
GCTCGATCGTCTAGGATAGAGGGGGAGATTGGGTA---AAACCAGACATCCGGATTTACGTTTGCATACAAGGAGAAGCA
AATTAATAGTGACCGGCAAAAAGGCTTTTCTTTTGCTATGTAGCTAATTCTTATTATCTTCTTGTTGTTGCTACATCTTC
TACTAAT----------------------ATTTACTCTACTCTCTGGAGGAGAAACCCAAAAAAAGATTCAACATTTGCA
GGTGCAGCAGGACGAGAAAAACTGCAATTTCCTGAAACCATCACTGCTCGATC-AATGTTCAGCCACCAATATACAGGCT
TGTCGCAATGCAATGCAGAGTGGTTCCTCAGTCACCACTCACCTCTCCTTTGCTTCCAGATAGAGGAAACAAGGTTCCTT
GGTGACTCTATTCGTCGCCATCCGGCGTACATGCTGAAGCAGTATTTATCTTCCTATAACTCGTCGAACTACCGATGAAG
TTTCAGTATCTGGCTCATCTGTGACCTGCTTTGGCTGCGACTCACCATCCTCTTGGCTCCTCCTTCAAATGGCTATTTCC
AAGAACTTGTGCCTAGAGAGAAAGGTTACTTGGTAAGTTGGTTTACTAGATCAAGAACAACACAAAATTGTGCATTTCGA
ACTCCAAAGCAGTTCATGGAAGGATATGAAATCACTAGGTAAAATGCAGAACCTCAAACTGGTTTGTGATAAAAAAGAGT
GTTAAGTAGTGACATCAACTGGAAGAACTGACCATTGTAAGATCTGGGAGCAAGTAACTGGCAAGGTTTTCATTCACCGC
AACTCCCAACTGAGGCATCTGACTCATTTTTCCCGGCATTTGGCTCATGCTGTTTATAGAAGAAGCATCATTAGAGGCAG
GGATTTATTTTTTCTTCACAAGCACAGCTTTAATATTTCTGCAACTGAATTATGCATGGATCATAGGTGGAATAATATGT
TTACATTTTCAAAAGGCCATCAATGTTCCTTCTCACGCGATTGAAGAGATCGTTG
>chr2A_35
----------------------------------AGAATTGTCACGGAGCACAGAGAGCCGAATATATCTCCGGAAGCCA
TCTCACGCACACATGGTTCAGAATTTCCTATGGCAGAGGTCGTAAGTGACAACAATATCGAGAACTCTGTGGCCGCCCAT
AGCAACACA------ATCCCTGGGTCGCCGCTACACATCTTCCCGTCGCCGTTGTCGTTGCAGCTTCGTCGCTGCCACCG
TCAACCAGCCGCCAAGC-CACCATTGTCAGATTTAGGCATCGAAAGCCCATCACTACACACGACCACCCGTGCCATCCAT
TGCTACCCATGCAGCACGACCACCACCTAGGGCACTCGGAGTCCTCGCCCCG-CATCCATGCTCCATCGACGGTGTCGCA
CCATTTGAGGCCGTCGTGCCTTGCGATTGGAGAGCTTCCTTCCCGAGAGATCG-CCGCATGAGAAGGCATCCCTACCAGC
GGCGACAGCTGAGGGAGAGGAGGAGACGACCAGGTTTCATGGGAGATGCAGAAGATGGGTTGTTTCCCTCCATTGCATAC
TACTAATAGATTAGAGGATTTTTTTTTCTTAAGAACAATTAGACCATATCCGGAGATGCTTTGATGGAATATGACGCACA
TTCTAGTGTGTATCCGAGGAAAAGAA-GGGAACCACAACGGGCAATTAATCCTCTTTGTCGA------------------
---------TTCATTAAAGAAACTGCCATCAAGTTTTACAAAGGTTATAGCAAAACAGGGAAACATACCCAACTAAGGGC
TCCTTTGATTCAAAGGAATTATTTAGGATTTTTGAAGGATTGAAATCCTTAGAATTTTTTTCTATATCGGCTCTTTGATT
CATAGGATTGGATCCCATAGGAATTTATCCTATGGAATTTTTTGTACTACATTTTATAGGAAATCTAACATCCACTCCAA
CCTCTTTTTACAATTCCTTTGTTTTTCATGTGACATCAAACACTCTTTGCTAATCCTATAGGATTCAAGTTGACATGCCA
CTGCAATCCTATACTTTTCATATTCCTACATTTTCAAAATCCTGTGAATCAAAGAGGCCCTAAACCTAAACCCATGGCAA
TTCAGTCACAAAAAAAAAACAGCAACTAAACCTAAACCCATGGCAATTCATCTAAACAGCAGACGACCGCCAGATTAGCT
CCTGGCGAACGTGACGAACCTTATCCTCGGAATGCATGGCTACTATGCTGTGCGTACCTGAACCCATGGAGAACCGAACA
AGATTCCACCAAAGGTGGAAAGGCTCCGCCATGGCAATGGCATTGCAGCTCGCCATCCAATCACTCGCCGCAAGCCTCTT
CCGCTCTCCTAACAAACCCGCCACCAAGCCCCCGAGCAACGGCCACCGCCACCCGCAGGAACCAACCGGCAGCAGCAGGT
GCAGCGGCAGAAGGAGCCTTGCGGCGGCGGCGGCGGCGGCGGCAGTTGGCACGGCGCTCCTCGCGTCCCAGCTGCTGCCC
CCCACGGCAGGCATCGCGGGCGCGTTCGACCTCGACCTCCGGATCACCATCCCGGAGCAGTCGAGCGAGGAGGCCGAGGC
CGTGGTGAGGACGCACGCGAGGAACCTGGTGCGCGTCAAGCAGTTCATCGACGCCAGGTCGTGGCGGGAGCTGCAGACGG
CGCTGCGGGCCAGCGCCGCCAACCTCAAGCAGGACCTGTACGCCATCATCCAGGCGAGGCCCCCGGGCCAGCGCCCCGAG
CTCCGGAGGCTCTACTCCGACCTCTTCAACAACGTCACCAGAGTAGGGGATCGCACACAGATCAATCTGCCTTTTGAGCC
TCTGACATTGCTCATGGCGTGCTGACATTGCTCTGCTCTTGTGTGCGCAGCTGGACTATGCAGCCAGAGACAAGGATGAG
CCCCAAGTGCAGGAATGCTACGGTAACATTGTGGCCGCCATTGACCAGATTTTTGCCAGGATCATGTAGTTTTTGCACCG
GCTCGATCGTCTAGGATAGAGGGAGAGATTGGATAGACAAACTAGACATCCGGATTCACGTTTGCATACAAGGAGAATCA
AATAAATATGGACCGGCAAAAAGGCATTTCTTTTGCTATGTAGCTAGTTCTTATTAGCTTCTTG----------------
------TTGTTGCTACATCTTCTACTAGTATTTACTCTA---------------------------------------CA
GGTGCAGCAGGACGAGAAAAACTGCAATTTCCTGAAACCATCACTGCTCGACC-AATGTTCAGCCACCAATATACAGGCT
TGTCGCAATGCAATGCAGAGTGGTTCCTCAGTCACCACTCACCTCTCCTTTGCTTCCAGATAGAGGAAACAAGGTTCCTT
GGTGACTCTATTCGTCGCCATCTGGCATACATGCTGGAGCACTATTTATCTTCCTATAATTCGCCGAACTACCGATGAAG
TTTCAGTATCTGCCTCATCTGTGACCTGCTTTGGCTGTGACTCACCATCCTCTTGGCTCCTCCTTCAAATGGCTATTTCC
AAGAACTTGTGCCTGGAGAGAAAGGTTACTTGGTAAGTTGGTTCACTAGATCAAGAGAAACACAAAATTGTGCATTTCGA
ACTCCAAAGCAGTTCATGAAAGGATATGAAATCACTAGGTAAAATGCAGAACCTCAAACTGGTTTGTGAT-AAAAAGAGT
GTCAAGTAGTGACATCAACTGGAAGAACTTACCATTGTAAGATCTGGGAGCAAGTAACTAGCAAGGTTTTCATTCACCGC
AACTCCCAACTGAGGCATCTCGCTCATTTTTCCAGGCATTTGGCTCATGCTGTTCATAGAAGAAGCATCATTAGAGGCAG
GGATTTTTTT--TCTTCACAAGCACAGCTTTAATATTTCTGCAACTGAATTATGCATGGATCGTAGGTGGAATAATATGT
TTACATTTTCAAAAGGCCATCAATGTTCCTTCTCACGCGATTGAAGAGATCGGTG
>chr2B_802
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-------AAATCA-------------------------------------------------------------------
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----------------------------------------------------------------------------GCAA
TTCAGTAAAAGAAAAAC-CCAGCAACTAAACCTAAACCCATGGCAATTCGTCTAAACAGCAGACGACCGCCAGATTAGCT
CCAGGCGAACGTGACGAACCTTATCCTCGGAATACATGGCTACTATGCCGTGCACACCTGAACCAATGGAGAACCAAACA
AGATTCCACC-AAGGTGGAAAGACTCCGCCATGGCAATGGCATTGCAGCTCGCCATCCAATCACTCGCCGCAAGCATCTC
GCGCTCTCCTAACAAACCCACCACTAAGCCCCCGAGCAATGGCCACCACCACCCGCAGGAACCAACCGGCAGCAGTAGCA
GCAGCGGCAGAAGGAGCCTTGCGGCAGCGGCGGCGGC---C------GGCACGGCGCTCCTCGCGTCCCAGCTGCTGCC-
-----GGCGGGCATCGCGGGCGCGTTCGACCTAGACCTTCGGATCACCATCCCGGAGCAGTCGAGCGAGGAGGCCGAGGC
CGTGGTGAGGACGCACGCGAGGAACCTGGTGCGCGTCAAGCAGTACATCGACGCCAGGTCGTGGCGGGAGCTGCAGACGG
CGCTGCGGGCCAGCGCCGCCAACCTCAAGCAGGACCTGTACGCCATCATCCAGGCGAGGCCGCCGGGCCAGCGCCCCGAG
CTCCGGAGACTCTACTCCGACCTCTTCAACAACGTCACCAGAGTAGGGGATCTCACACAGATCAATCTGCCTTTTCAGCC
TCTGACATTGCTCATGGCGCGCTGACATTGCTCTGCTCTTGTGCGCGCAGCTGGACTATGCGGCCAGAGACAAGGATGAG
CTCCAAGTCCAGGAATGCTACGGCAACATTGTGGCCGCCATTGACCAGATTTTTGCCAGAATCCTGTAGATTTTGCACTG
GCTCGATCGTCTAGGATAGAGGGAGAGATTGGATAGACAAACTAGACATCCGGATTTACGTTTGCATACAAGGAGAA---
AATAAATATGGACCGGCAAAAAGGCACTTCTTTTGCTATGTAGCTAGTTCTTATTAGCTTCTTG----------------
------T----------------------ATTTACTCTACTCTCTGGAGGAGAAACCCAAAAAAAGAGTCAACATTTGCA
GGTGCAGCAGGACGAGAAAAACTACAATTTCTTGAAACCATCACTGCTCGATCAAATGTTCAGCCACCAATATTCAGGCT
TGTCGCAATGCAATGCAGAGTGGTTCCTCAGTCACCACTCGCCTCTCCTTTGCTTCCAGATAGAGGAAACAAGGTTCCTT
GGTGACTCTATTCGTCGCCATCTGGTGTACATGCTGAAGCAGTATTTATCTTCCTATAACTCGCCGAACTACCGATGAAG
TTTCAGTATCTTCCTCATCTGTGACCTGCTTTGGCTGCGACTCACCATCCTCTTGGCTCCTCCTTCAAATGGCTATTTCC
AAGAACTTGTGCCTAGAGAGAAAGGTTACTTGGTAAGTTGGTTTACTAGATCAAGAACAACACAAAATTGTGCATTTCGA
ACTCCAAAGCAGTTCATGAAAGGATATGAAATCACTAGGTAAAATGCACAACCTCAAACTGGTTTGTGAT-AAG-AGAGT
GTCAAGTAGTGACAGCACCTGGAAGAACTTACCATTGTAAGATCTGGGAGCAAGTAACTGGCAAGGTTTTCATTCACCGC
AACTCCCAACTGAGGCATCTGACTCATTTTTCCCGGCATTTGGCTCATGCTGTTTATAGAAGAAGCATCATTAGAGGCAG
GGATTCTTGT--TCTTCACAAGCACAGCTTTAATATTTCTGCTAATGAATTATGCATTGATCATAGGTGGAATAATATGT
TTACATTTTCAAGAGGCCATCAATGTTCCTTCGCACGCGATTGAAGAGATCGATG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SSS-S-S---S-----S-------------S-----
------S--------S-S-S---SS------------------S----------SSS----------SS--------SSS
S--S-S-SSSSSSSS-----S-------S-------------S-------------S----S------S-S--------S
---------S-----SSS----------S-------------S------------------S-------SSS--S-----
--S-S----S---------------------------------------S--S---S----------------------S
-----SSS--SS---------S--------------S--S--S--------SSS-----S----------S---------
--S--------S-------S-------S----------S----------S-------------------SSS--------
--S--------------------S--SSS-------------------------------S--------------S-S-S
-------S------S-----------S----S-S---S---S-----S---S-----S-SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS--------------SS----------------------------------------S---------SSS-S
SSSSSSS-------------------------------------------------------------------------
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-------S------------------------------------------------------------------------
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-----------------------S--------------------------------------------------------
------------------------------------------------------------------------S-------
-------------------S-----------S------S-----------S----------------------------S
--S--------------S--------------------------------------------------------------
------------------------------------------------S-------------------------------
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-------------------------------------S---------------------S-------S------------
----S---------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
-----------------------S--------S---------S----------------------------------S--
---S----SS---------------S--------------------S---------S-------SSSSSSSSSSSSSSSS
SSSSSS-------------------------------------------------------------S------------
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----------------------S----------------------------------------S----------------
------------S-------------------------------------------------------------------
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------------------S---------------------------------------------------S---------
--S--------------------------S--------------------------------------------------
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------S---SS--------------------------------------------------------------------
----------------------------------------------------S--
>forward_452
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--------------------------------AGCTCCCCTCACGAGAGATT----------------------------
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>reverse_2089
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--------GTGACCGGCAAAAAGGCTTT----------------------------------------------------
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