>input_sequence_72136
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--------------------------------------------------ATGCGTCTCGTCAGCCTCACCCGCGCGGCC
ACTCA---CGTCCGCGCGGCGTCGACGACGGCAACCAT------AGCGGCGGCGCTGAAGGTGGGCGACGCGCT---GCG
CCCGCGCCGGCGGCGGTTCACGGAGGACGACGTGGCGGCGTACGCGGGGGTGAGCGGCGACCGCAACCCCGTCCA-CCTT
GATGATGCCTTCGCGCGCGGGAC--------------------GGGCGGGTTCCAGCGTGGCCGCGTGGTGCACGGCATG
CTCGTCGCCTCCCTCTTCCCCGCCCTCATCGCCTCCCACTTCGTGCGCTCCTTT----CCTCCCCCTC------------
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-----------------------------TTTGCCATTCCGCCGAACGGCTGGCGGGCT-------------------TC
CCACCCTGATCTGACGGCTGCTTCCTCG--------TGCAGCCTGGAGCCGTGTACGCGAGCCAGTCCCTCAAGTTCGCG
GCGCCGGTGCACGTCGGAGACGAGGTGGTCGCGCAGGTGCAGGCGCTCCACATCAAGGCCACCGGCGGAAGGCACATGTA
----T-ACTACCAC---CTAGCGCCATTTTTGTATCT---------TCTAGCATTGCGCTTCCTGGCAACTAATAGCA--
---AT-----ATCTGTTGGGCAGCGTCAAGTTCGCCACCAAGTGCTTCATGGACGATGAGGAGACTCTCGCCATCGACGG
CGAGGCCATGGC-TTTTCTGCCCACGCTGCAGCTCAGCGCCGAGGCAATCGAGTGA------------------------
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>chr1A_1_TraesCS1A01G370000
TTGAATCCCTATGCTATGTTTGTTATGCTATTGATCTGTTTCTGTGTTTCATCA--AATTCATTTTGTTGCCATCTGATT
TAGCAAGTTTGAAGTTCTTAATGTA-TTTACCAGTATCTGAGGTAGTCGCCCTCCATGTGTTGTATTTGGCCATACTATA
TTGTCTCCATTTGCATGTTTGTCCACTTATTTATCAAGCAGCTGTATCGACGAG-TA---TTCTAATATAGACCA-----
------TGTTTCTGGTCTTGCAGAAAATGCTGCTTCCCTGTGGCCTCCCTCCTGAGAGAGATGAAGACTGAGG-AGTCAG
TACTGTAGTGCTACCTCC------ACAGCAGCTTGTGTTCAGA-------TGATGTTTGTTACCAAAGTCTT-AAGCTC-
AG-----------------GCACTTTGTGTGGTTGTGTTTGAACATC---------TTTAGCACTGTGCACCCTGTTCTT
GCTTGTAGTCCTCTCTATCTCTATGGATCCTTACCCGTTCAGATTGGTTTGGTTATCCCGCTACCATCTCGTTTAAATTA
TGGACGCAGGTGGCTATCTTTTCTCATGAATGGGTAAATGTAATGTGATG-TCGTATCTGCATCTTGCCATC--TGTGAA
--CGACTGAATCGAATTGCAGCAGAACATGTCGAAACTGCAATATTTTTGAGAGTTCATG--------------------
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----------TCGGTTTCTGAAGCAA-----------------------CAGCAAATTCGATGGATCTGTTTGCTGAAGT
TTTTGA---------------CAGAGTCTGCCATACATATACGTGAACACTGCAACTAGT--------------------
-----------CTGAATCCAATTTTCTTCTGCCTTCTGTATCCTGATCATACCAAATGTCACTCCAGCCAGTAACGAAAT
CACCGTGGCATACGGTGTAATACGCGTAAGCAGTCCTAGAGAGTAGTATACGCACTGGCGGTTTCGATTTCTTGGGCCGG
GTCCAGTACATCGGCAGATGGCCTGGTG---------------GGCCGCGATGCATACACACAGGCCATCGTTTTCCTTT
GCAGCGGCCCTCTCTCGCTTCATCCC--CACATCCCGGCGCCGGGAGGAA------------------------------
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-----------AA---------------------------GCTACC-AGGATGCGTCTCGTCAGCCTCACCCGCGCGGCC
ACTCA---CGTCCGCGCGGCGTCGACGACGGCAACCAT------AGCGGCGGCGCTGAAGGTGGGCGACGCGCT---GCG
CCCGCGCCGGCGGCGGTTCACGGAGGACGACGTGGCGGCGTACGCGGGGGTGAGCGGCGACCGCAACCCCGTCCA-CCTT
GATGATGCCTTCGCGCGCGGGAC--------------------GGGCGGGTTCCAGCGTGGCCGCGTGGTGCACGGCATG
CTCGTCGCCTCCCTCTTCCCCGCCCTCATCGCCTCCCACTTCGTGCGCTCCTTT----CCTCCCCCTC------------
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-----------------------------TTTGCCATTCCGCCGAACGGCTGGCGGGCT-------------------TC
CCACCCTGATCTGACGGCTGCTTCCTCG--------TGCAGCCTGGAGCCGTGTACGCGAGCCAGTCCCTCAAGTTCGCG
GCGCCGGTGCACGTCGGAGACGAGGTGGTCGCGCAGGTGCAGGCGCTCCACATCAAGGCCACCGGCGGAAGGCACATGTA
----T-ACTACCAC---CTAGCGCCATTTTTGTATCT---------TCTAGCATTGCGCTTCCTGGCAACTAATAGCA--
---AT-----ATCTGTTGGGCAGCGTCAAGTTCGCCACCAAGTGCTTCATGGACGATGAGGAGACTCTCGCCATCGACGG
CGAGGCCATGGC-TTTTCTGCCCACGCTGCAGCTCAGCGCCGAGGCAATCGAGTGACAAGTATGTT-----GATTCGATG
CTA---------------TGATTGATCAATTTGGAACAGGGCGACTTTTATCTCATGATGAACCATTCCGCCTTCGCATA
AGCTTCGGGCCTCAGGGACATGAGATTGCAGCTTTGTTGGGAATAGCTCGTTGCAGTCTTCCTGTTATGATTAACAGCAT
GAGCAAAGAGTAGTATATCACTTCAGTTTTCTGAACATTCAATGGGTTGGGTGTTCATGCTGACTGTGATAGGAGCTGAA
GAATTTCAACAGATTAATTTGAACCACTAGGCATACTCAGTA---GATTACTTCAGT-TGCTCAGTACTACTTCTTGCTG
CTGCTCCATACTATTTCTGCCGCTGCTCAGTACTACTTCTTGCTGCTGCTCCATACCATTTCTGCCGCTGCTCTGTTGTG
AAGAGTGGAAGATAGGAAATAACGT-GGTCTGCTTAGTTCGCAAAATAACAAATCTGAATCTTGTACATTTAAACTGAAA
TCTTCTAGGAACTGAAGAATTTCAACAGAATAACTTGAACCACTAGGC--------------------------------
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------------------------------------------------------------TGTAACCTGAGAAGATGTGT
TCCCTCTTTCCCTCCAAAACTGAGCAGAAGCAAGTTGTAGTACTAAGCAAAAGGGAGTAATTGACAAAAAACTACCACAT
TTCACGTATCCGTCCCACTGAACTACCACATTTTGAAAACTGACCAAAAACTCCAGATTAGTGATAATTTTGTGACAAAA
AACTACCAGGTTGAGTTGATGATCGTTTTTATGATTTTAAACCTGTTTATGACATGCGGGACCCGCGTGTCAGAGCTGAT
GTGGCGGAAAAGTTACCTCCGTTTATTTCGACAGTTAGATTAACCGTTATTACAGGTGGGTCCCACATGTCAGCATCTAC
CTTCTTCTTCCTCATCCTCTTTCTCTCTTAAGCATTTCAACGAACACTTGGTGTTCGTACCCGCGTGGTGAAACAGAGCA
TGGGCACGCTGTCGAGGACGCGGAGCTCGCCCTACCGCGTCGCCGGTGGCCTT
>chr1A_1
TTGAACACCTATGCTATGGTCGTGGCACTGTTGATCTGTTCATGTGTTTCATCACAAGTTCATTCTATTGCCATCTGCTT
TAGCAAGTTTGAAGTTCTTAATGTA-TTTACAAGTATATGAGGTAGTCGCCCGCCGTACGTAG--------CATACCACA
GTTTCTCCATTTGCATGTTTGTCCACTTATTTA-CAAGCTGTTGTATCAACAATGTA---TTTTACTATAAATTATTAAA
ACCTTTTGTTTCTGGTCTTGCAGAAAATGCTGCTTCCCTGTGGCCTCCCTCCTGAAAGAGACGAAGACTGAGG-AGCTGG
TGCTATAGTGCTACCTCC------AGAGCAACTTGTGTCCAGA-------TGCTGTGCGTTACCAAAGTCTC-GAGGCCT
GTCTGGACTAGCGACATGAGCACTCTCTGTGATTGTGTTTGAACATCGCGAACATGTTTG--------------------
------------------------------------------------------------------TCTAGTTTAATTTC
TGGACGGCCTTGCCCATCTTGCCTCAT-AAAGGGGTAATGTACCGTGATG-TCGTATCTGCATCTTACTATA--TATGAG
AACGGTATAATCAAATTGCAGCAGCGCACGTTGAGACAGGAATGTTTTTTTCTTTTGAAACTAGCTGTTTTCGTAATCTT
GCTAGCCGGGATTCGTTGTCTCCACCTGCTTCGCTCCATTGGCGCCTGAGGAGGAGATTGA-------------------
-----------GGCAGCCCTTGCATTTCTTTTTCGATGAACATCACATCTGTACTCCACTACCTGATATACCTTGGATGT
CAGTTTCGCATCAGTGTCTGAAGCAAGCAAAATTTGCTATACTGTTGGTTCTCAAAGTAAGACAAAAGGTTTGCTATACT
GTCATACGTACACGAACACTGCAA---------------------------------AGT--------------------
-----------CTGAATGCAATTTCCTT-TGCCTTCTGTACTCTGATCGTGCCAAGTATCACTCCAGTCCTCAGCCCTCA
TTTTTTTTTACTGGTGTCA------------------------------------------TTTCGATTTCTTGGGCCGG
GTC--GCGCGGCAGCGGATGGGTAGGCCGGGCCGCGATAAGCAGGCGGCGATGCACGCACTCTCGCGGAGGGACTACTAA
GCCCGTTTGTGCA---GCTCGTGCCCTTCACCTCCGGAAAGAAGAAGGGAACTTCCTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
GAAGAAGAAGGGAAAAAAACCCTCCGAAAAGAAGAAGGAAGCTGCC-GGGA---------TGCGCCTCGCCCGCGCGGCC
CCTCTGCTCGTCCGCACGGCGGCGACGGCGGCCACCGCCGACCCAGCGGCGGCGCTGAAGGCTGGCGACGCGCT---GCG
CGCGCGTCCGCGGCGGTTCACGGAGGACGACGTGGCGGCGTACGCGGCGGTGAGCGGCGACCGCAACCCCGTCCA-CCT-
-------------------GGACGACGCCTTCGCCCGCGGGACGGGCGGGTTCCAGCGCGGCCGCGTGGTGCACGGCATG
CTCGTCGCCTCCCTCTTCCCCGCCCTCATCGCATCCCACTTCGTATGCTTCCTCCCTCCCTCCCTCTC------------
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-----------------------------TTTGGCATTCCGCCGAACAGGTGGTGGGCATGGCGCCTGGTCGACGGGATC
CCACCCTGCTCTGACGGGTGCTTCTTCGCGTTGCGATGCAGCCTGGGGCCGTGTACGCGAGCCAGTCCCTCAAGTTCGCG
GCGCCGGTGTACGTCGGAGACGAGGTGGTCGCGCAGGTGCAGGCGCTCCATATCAAGGCCGCCGGCGCAAGGCACATGTA
CTACTTACTACTAC---CTGGCACCATTTTGC----A--TCTTCTTTCTAGCCTTGTGTTTGCTGGAAACTGATAGTAA-
--TAT-----ATCTATTGGGCAGCGTCAAGTTCGCCACCAAGTGCTTCATGGCCGATGAAGAGACTCTCGCCATTGACGG
CCAGGCCATGGC-TTTTCTGCCCACACTGCAGCTCAGCACAGAGGCGATGGAGTGACATGTTTGTT-----CATTAGACG
CTACCGAAGCAGATGCTACACCA-ATCAATTTGAAATGGGGTGATTCTTATCTCATGATGAACTATTTAGCCTTCATATA
AGCTTCAGGCCTTGGGGACATGGGATTG----------------------------------------------------
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>chr1D_1
TTGAACCCCTATGCTATGTTCTGAATGCTATTGATCTGTTATTGTGTTTCATCA--AATTCATTTTATTGCCATCTGATT
TAGCATGGTTGAGGTTCTAAATGTATTTTACCAGTATCTGAGGTAGTCGCCCTCCATGCGATGTATCTGGCCATACCACA
ATGTCTCCATTAGCATGC-TGTCCACTTGTTTAACAAGCAGTTGTATCGACGAGGCA---TTTTAATATAAATTATTAAA
ACATGAGC-TTCTGGTGTTGCAGAAAATGCTGCTCCCCTGTGGCCTCCCCCCTGAGAGAGACGAAGACTGAGG-AGTTGG
TACTATAGTGCTACCTCCACAGCAACAGCAGCTTGTGTTCAGA-------TGATGGCTGTTACCAAAGTCTA-AAGTCGA
AG-----------------GCACTTTGTGTGGTTGTGTTTGAACATCCTGAACATCTTTAGCACCTTGTACCCTGTTTTT
ACATGTATTGCACTCC------ATGGATCTTTATCTCTGTTCA-------------------------------------
---------------------------------------------TGATG-TCGTATCTGCCTCCTACCATC--TGTGAA
--TGATCGAATCGAATCATAGCAACACATGTTGAAGTTGGTATGTTGTTGAGATGCTATGCTCTGGTTTTTCATGTTCCT
GCGAGGAGGC-------------------------------------------------------GGGGCCAGCACGGAC
CAACGTCTGCTGGCAGCCGCCACATTTCCTTTTACAGGAACTACAGACGG-------ACTAGCTGATATCTTACCTCGAT
TTTACTGGAGATG--------------------------------TCGGTAGCAAATTGGATGAATCTATTCGCTAAACT
GTTCGA---------------CAG---------------------------------AGTCTGAATCCAATTTCCTTTTT
TTTTTGAGACACTGAATCCAATTTCCTTGTGCATTTTGTATTCTGATCGTGCCAAGTGGG--------------------
------------------------------------------------------CTGGCGGTTCCGATTTCTTGGGCCGG
GTCCAGTACATCGGCGGATGGCTTGATG---------------GGCCGC------------CACGCCATAGTTCTTCTTT
GCCGTGGC-CTCTCTCGCTCCATCCCCAACATCCCCGGCGCCGGGGGGAA------------------------------
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-----------AA---------------------------GCTACCAGGGATGCGTCTCGTCAGCCTCGCGCGCGCGGCC
CCTCG---CGTCCGCGCGGCGTCGACGGCGGCCACCCCCACCCTGGCGGCGGCGCTGAAGGTGGGCGACGCGCT---GCG
CCCGCGCCGGCGGCGGTTCACGGAGGAGGACGTGGCGGCGTACGCGGGGGTGAGCGGCGACCGCAACCCCGTGCA-CCTA
GACGACGCCTTCGCGCGCGGGAC--------------------GGGCGGCTTCCAGCGCGGCCGCGTGGTGCACGGCATG
CTCGTCGCCTCCCTCTTCCCCGCCCTCATCGCCTCCCACTTCGTACGCTCCTCTC--CTCCCCCTCTC------------
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-----------------------------TTTGCCATTTCGCCGAGCAGCTGGTGGGCATGACG---GGTGA---GGATG
CCACCCTGATCTGACGGGTGCT------TCTT--CGTGCAGCCTGGAGCCGTGTACGCGAGCCAGTCCCTCAAGTTCGCG
GCGCCGGTGCACGTCGGGGACGAGGTGGTCGCGCAGGTGCAGGCGCTCCACATCAAGGCCACCGGCGCAAGGCACATGTA
CTACT-ACTACTAC---CTAGCGCCATTTTTCTATCTCCTTTTCTTTCTAGCATTGCCCTTGCTGACAACTAATAGTAAT
GCTAT-----ATCTGTTGGGCAGCGTCAAGTTCGCCACCAGGTGCTTCATGGACGACGAGGAGACTCTCGCCATCGACGG
CGAGGCCATGGC-TTTTCTGCCCACACTGCAGCTCAGCACAGAGGCAATCGAGTGACAAGTATGTTATGTTGATTAGAAC
C---------------------------ATTTGGAATAGGACGACTTTTATCTCATGATGAAACATTTTGCCTCCGCATA
AGC-----------GGGACATAAGATTGCAGCTTTGTTGGTAATAGTTCGTTGCAGTCTCCCTGTTATGATTAACAGCAT
GGGCAAAGAGTAGTAGATCACTTCAGTTTTCTGAACATTCAATGGGCTGGGTGTTCATGCTGACTGTGATAGGAGCTGAA
GAATTTCAACAGATTAACTTGAACCACTAGGCATATTCAGTATG-GATCACTTCAGTCTGCTCAGTATTACTTCTTGCTG
CTGCTCCATATTACTTCT---------------------------------------------GCCGCTGCTCTGTTGTG
AAGAGAGGAAGAAAGGAAATAAC-CCGGTCTGCTTAGTTCACAAAATAACAAATCTGAATCTTTTACATTTAAACTGAAA
TCTTCTAGGAACTGAAGAAGTTTAACAGAATAACTTGAACCACTAGGCATGTTCAGTACTTCAGTGAACCTTGTAATGTG
CTTGTATCATGTTTGTTTGAATTTGCACCGGATTGGTTCTTCATTAGAGATCGACTCCAACAATTTGAACTCTTAGCCAA
TCTGAGAACTGGACGTGGTTCTCACGCTCATATTGTGCTCTGGGTAGGTTTCAGGAAAGTGGGAGAAGGAACAATGGAGC
GTGAGAAGTAAGGCGGGGGATAATATGCGGGAGTAGCAAAGACAGTGATCCCATATTGGCTGTAACCTGAGAAGATGTGT
TCCCTCTTTCCCTCCAAAACTGAGCAGAAGCAAGTTGTA---CTGAGCAAAAGGAGAG----------------------
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>chr1B_1
TTGAACCGCTATGTTATGTTCGTGGTGCTATTGATCTGTTTCTCTGTTTCATCA--AATTAATTTTA-TGCAATCTGATT
TAGCAAGTTCGAAGTTCTTAATCCA-TTTACCAGTATCTGAGGTAGTCGCCCTTCGTGCGTGGTATTTGGCCGTACTACA
TTGTCTCCATTTGCATGTTTGTCCACTTGTTTAACAATCAGCTGTAGTAATGAGGTATTCTTCTAATATAAAGCATTAAA
ACCTATT-TTTCTGGTGTTGCAGAAAATGCTGCTTCCGTGTGGCCTCCCCCCTGAGAGAGACGAAGACTGAGGGAGTTGG
TACTATAGTGCTACCTCC------ACAGCAGCTTATGTTCAGAATTCAGATGATGTTTGTTACCAGAATCTTTAACTCTA
AG-----------------GCACCTTATGTGGTTGTGTTTGAACTTCCTGAACATCTTTAGCACCGTGTACCCTGTT---
-----TATTGCACTCC------ATGGATCTTTATCCCTGTTCA-------------------------------------
---------------------------------------------TGATGGTCGTATCTGCCTCCTGCTATC--TGTGAA
--TGATTGAATCGAATTGCAGCAGCACATGTTGAAGTTGTAATGTTGTTGAGATGCTATGCTCTGGTTTTTCATGTTCCT
GCGAGCTGGCCTCT-----------CTGCCAGGCTTCATTGCTGCCACCAGTGGCGGAGGAGGCGGGGGGAAGCATGAAC
CACCGTCCGCCGGCAGCCGCCACATCTCCTTTTACTGGAACTACAGATGCAGTAGC----ACCTGATATCTCACCTCGAT
TTCACTTGAGATG--------------------------------TTGGCAGCAAATTGGATGAATCTGTTGGCTAAACT
GTTCGA---------------CAG---------------------------------AGT--------------------
-----------CTGAATCCAATTTCCTTGTGCATTTTGTATTCTGATCGTACCAAATGGG--------------------
------------------------------------------------------CTGGCGGTTTCGATTTCTTGGGCCGG
GTCCAGCACATCGGCAGATGGCTTGATG---------------GGCCGC------------CACGCCATCGTTCTTCTTT
GCCGTGGC-CTCTCTCGCTCCATCCCCACACATCCCGACGCCGGGAGGAA------------------------------
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-----------AA---------------------------GCTACCGGGGATGCTTCTCCTGAGCCTCGCGCGCGCGGCC
CCTCT---CGTCCGCGCGGCGTCGACGACGG------CCACCCTGGCGGCGGCGCTGAAGATGGGCGACGCGCT---GCG
CTCGCACCGGCGGCGGTTCACGGAGGAGGACGTGGCGGCGTACGCGGGGGTGAGCGGCGACCGCAACCCGGTCCA-CCT-
-------------------GGACGACGCCTTCGCGCGCGGGACGGGCGGGTTCCAGCGCGGCCGCGTGGTGCACGGCATG
CTCGTTGCCTCCCTCTTCCCCGCCCTCATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCATTCCGCCGAACGGGTGGCGGGCATGGCGCATGGTCGACGGGATC
CCGCCCTGATCTGACGGCTGCTTCTTCGTGTT--CGTGCAGCCTGGAGCCGTGTACGCGAGCCAGTCCCTCAAGTTCGCG
GCGCCGGTGCACGTCGGAGACGAGGTGGTCGCGCAGGTGCAGGCGCTCCACATCAAGGCCACCGGCGCAAGGCACATGTA
CTACT-ACC------ACCTAGCGCCATTTTT-TATCTCCTCTTCTTTCTAGCATTGCGCTTGCTGACAACTAATAGTA--
---ATGCTACATCTGCTGTGCAGCGTCAAGTTCGCCACCAAGTGCTTCATGGACGATGAGGAGACTCTCGCCATCGATGG
CGAGGCCATGGC-TTTTCTGCCGACACTGCAGCTCAGCGCGGAGGCAATCAAGTGACAAGTATGTT-----CATTAGAAC
C---------------------------ATTTGGAATAGGACGAATTTTATCTCATGACGAAACATGTCGCCTTCGCATA
AGCTCCGGGCCTAGGGGACATGAGATTGCAGCTTTGTTGGTAATACTTCGTTGCAGCCTTCCTGTTATGATTAACAGCAT
GAGCAAAGAGTAGTAGATCACTTCAGTTTTCTGAACATTCAATTGGTTGGGTGTTCATGCTGACTGTGGTAGGAACTGAA
GAATTTCAACAGAATAATTTGAACCACTAGGCATATTCAGTG---GATCACTTCAGTCTGCTCCAT--------------
-------------------------------ACTATTTCTCGCTGCTGCTCCATACTATTTCTGCCGCTGCTCTGTTGTG
AAGAGAGGAAGAAAGGAAATAAC-TCGGTCTGCTTAGTTCACAAAATAACAAATCTGAATCTTTTACATTTAAACTTAAA
TCTTCTAGGAACTGAAGAATTTCAACAGAATAACTTGAACCACTAGCCATGTTCAGTACTTCAGTGAACCTTGTAATGTG
CTTGTATCATGTTTGTTTGAATTTTCATTGGATTGATTCTTCATTAGAGACCGACTCCAACAATTTCAGCTCTTAGCCAA
ACTGAGAACTGGACGTGGTTCTCACTCTCATATTGTGCTCTGAGTAGGTTTCAGGAAAGTGGGAGAAGGAACAATTGAAC
GTGAGAAGTAAGGCGGGGGATAATGTGCGGGAGTAGCAAAGACAGTGATCCCATATTGGCTGTAACCTGAGAAGATGTGT
TCCCTCTTTCCCTCCAAAACTGAGCAGAAGCAAGTTGTA---CTGAGCAAAAGGAGAG----------------------
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-----------------------------------------------------
>chr1D_27
--------------------------GCTGTTGATCTGTTCATGTGTTTCATCA--AGTTCATTTTATTGCCATCTGCTT
TAGCAAGTTTGAAGTTCTTAACGTA-TTTACAAGTATATGAGGTAGTCGCCCGCCGTACGTGG--------CATACCACA
GTTTCTCCATTTGCATGTTTGTCCACTTATTTA-CAAGCTGTTGTATCGACAATGTA---TTTTAATATAAATTATTAAA
ACATTTTGTTTCTGGTCTTGCAGAAAATGCTGCTTCCCTGTGGCCTCCCTCCTGAAAGAGACGAAGACTGAGG-AGCTGG
TGCTATAGTGCTACCTCC------ACAGCAACTTGTGTCCAGA-------TGCTGTGCGTTACCAAAGTCTC-AAGGCCT
GTCTGGACTAGCGACATGAGCACTCTCTGTGATTGTGTTTGAACATCACGAACATCTTTG--------------------
------------------------------------------------------------------TCTAGTTTAATTTC
TGGACGGCCTTGGCCATCTTGCCTCAT-AAAGGGGTAATGTACCGTGATG-TCGTATCTGCGTCTTACTATATATGTGAA
--CGGTATAATCGAATTGCAGCAGCGCATGTTGAGACAGGAATGT-TTTTTCTTTTGAAACTAGCTTTTTTCGTAATCTT
GCTAGCTGGGATTCGTTGTCTCCACCTGCTTCGCTCCATTGGTGCCTGAGGAGGAGACTGA-------------------
-----------GGCAGCCCTTGCATTTCTTTTTCGATGAACTTCATATCTGTACTCCACTACCTGATATACCTTGGATGT
CAGTTTCGCATCAGTGTCTGAAGCAAGCAAAATTTGCTGTACTGTTGGTTCTCAAAATAAGAGAAAAGGTTTGCTATACT
GTCGTACGTACACGAACACTGCGA---------------------------------AGT--------------------
-----------CTGAATGCAATTTCCTT-TGCCTTCTGTACTCTGATCGTGCCAAGTATCACTCCAGTCCTCAGACCTCA
TTTTTTTC-ACTGGTGTGA------------------------------------------TTTCGATTTCTTGGGCCGG
GTC--GTACGGCAGCAGATGGGTAGGCCGGGCCGCGATAAGCAGGCGGCGATGCACGCACTCTCGCGGAGGGACTACTAA
GCCCGTTTGTGCA---GCTCGTGCCCTTCACCTCCGGAAAGAAGAAGGAA------------------------------
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-----------GAAAAAAACCCTCCGGAAAGAAGAAGGAAGCTGCC-GGGA---------TGCGCCTCGCCCGCGCGGCC
CCTCTGCTCGTCCGCACGGCGGCGACGGCGGCCACCGCCGACCCAGCAGCGGCGCTGAAGGCGGGCGACGCGCT---GCG
CTCGCGTCCGCGGCGGTTCACGGAGGACGACGTGGCGGCCTACGCGGGGGTGAGCGGCGACCGCAACCCCGTCCA-CCT-
-------------------GGACGACGCCTTCGCCCGCGGGGCGGGCGGGTTCCAGAGCGGCCGCGTGGTGCACGGCATG
CTCGTCGCCTCCCTCTTCCCAGCCCTCATCGCCTCCCACTTCGTGCGCTCCCTCCCTCCT----CCTC------------
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-----------------------------TTTGCCATTTCGTCGAACAGCAGGTGGGCATGGCG---GGTCAACGGGA-T
CCCGCCTGATCTGACCGGTGCTTCTTCGCGTT--TGTGCAGCCTGGGGCCGTGTACGCGAGCCAGTCCCTCAAGTTCTCG
GCGCCGGTGTACGTCGGCGACGAGGTGGTCGCGCAGGTGCAGGCGCTCCAAATCAAGGCCGCCGGCGCAAGGCACATGTA
CT--------CTAC---CTAGCACCCCTTAGACTGTA--TCTTCTGTCTAGCCTTGTGCTTGCTGAAAACTAATAGTA--
---AT-----ATCTGTTTGGCAGCGTCAAGTTCGCCACCAAGTGCTTCACGGACGATGAAGAGACACTCGCCATTGACGG
CGAGGCCATAGC-TTTTCTGCCCACACTGAAGCTCTGCACAGAGGCAATCGAGTGACAAGTATGTT-----GATT-----
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>chr1B_990
--------------------------------------------------------------------------------
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-----------AA---------------------------GCTGCC-GGGATGCGTCTGGCGCGCCTCGCCCGCGCGGCC
CCTCTTCTCGTCCGCACGGCGGCGACGGCGGCCACCGCCGACCCAGCGGCGGCGCTGAAGGCGGGCGACGCGCT---GCG
CTCGCGCCGGCGGCGGTTCACGGAGGACGACGTGGCGGCGTACGCGGGGGTGAGCGGCGACCGCAACCCCGTCCA-CCT-
-------------------GGACGACGCCTTCGCGCGCGGGGCGGGCGGGTTCCAGCGCGGCCGCGTGGTGCACGGCATG
CTCGTCGCCTCCCTCTTCCCAGCCCTCATCGCCTCCCACTTCGTACGCTCCCTCCCTCTCCCCCTCTC------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------TTTGGCATTCCGCCGAACAGGTGGTCGGCGTGGCG---GGTCGATGGGA-T
CCAGCCTGATCTGACGGGTGCTTCTTCGCGTT--GATGCAGCCTGGGGCCGTGTACGCGAGCCAGTCGCTCAAGTTCGCG
GCGCCGGTGTACGTCGGAGACGAGGTGGTCGCGCAGGTGCAGGCGCTCCAAATCAAGGCGGCCAGCGGAAGGCACATGTA
CTACCTAGCACCA-----------------------TCCTCTTGTTTCCGACCTTGTGCTTGCTGACAACTAACAGTAAC
---AT-----ATCTGTCGGGCAGTGTCAAGTTCGCCACCAAGTGCTTCACGGATGACGATCAGACTCTCGCCATTGACGG
CGAGGCCATGGC-TTTTCTGCCCACACTGCAGCTCAGCACAGAGGCGATGGAGTGACATGTTTGTT-----CATTAGACG
CTACCGAAGCAGATGCTATGATCGATCAATTTGGAATGGGGTGATTCTTATCTCATGATGAACCATTTCGCCTTCATAAA
AGCTTGAGGCCTTGGGGACATTAGACTGCAATTTTGTT------------------------------------------
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>chr7A_1045
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-----------------GGCATCGACGACGGCCGT------CCCAGCGGCGCTGCTGAAGGTGGGCGATGCGCT---GCG
CGCGCCCCGGCGGCTGTTCACGGAGGACGACGTGGCGGCGTACGCCGGGGTGAGCGGCGACCGCAACCCCGTCCA-CCT-
-------------------GGAC--------------------GGGCGGGTTCCAGCGCGGCCGCGTGGTGCACGGCATG
CTCTTCGCCTCCCTCTTCCCCACCCTCATCGCCTCCCGCGTCGTACGCTCCTTTCCTCCCCC------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------TCTGCCATTCTGCCGAATGGCTGGCGGGCATGGCGCCCGGTCGACGGGA-C
CCCGCCTGATCTGACGGCTGCTTCTT-GTCTT--CGTGCAGCCTGGAGCCGTGTACGCGAGCCAGTCCCTCAAGTTCGCG
GCGCCGGTGCACGTC--------GGTGGTTGCGCAGGTGCAGGCGCTCCACATCAAGGCCACCGGCGCAAGGCACGTGTA
CTACT-ACCACTACTACCTAGCGCCATTTTTGTATCTCCTCTTCTTTCTAGCATTGCGCCTGCTGAGAACTAATAGTAAT
GCTAT-----ATCTGTTGGGCAGCGTCAAGTTCGCCACCAAGTGCTTCACGGACGATGAGGAGAGTCATGCCATTGACGG
CGAGGCCATGGC-TTTTCTGCCCACGCTGCAGCTCAGTGCAGAGGCAATCGAGTGACAAGTATGTT-----GATTAGAAC
C---------------------------ATTTCGAATGGGATGACTTTTATCCCATGATGAACCATTTCGCCTTCGCATA
AACTTCGGGGCCGGGGGACATGAGATTGCAGCTTTGTCGGTAATAGTTCGTTGCAGTCTTCCTGTTATGATTGATAGCAT
GAGCAAAGAGTAGTAGATCACTTCAGTTTTCTAAACATTCAATGGGCTGGGTGTACATGCTGAC--TGATAGGAACTGAA
GAATTTCAACAGGTTAACTTGAATCACTAGGCATATTCAGTACTAGATCACTTCAGTCTGCTCAGTG-------------
--------------------------------CTACTTCTTGCTGCTGCTCCATACTATTTCTGCCGTTGCTCTGTTGTG
GAGAGAGGAAGAAAGGAAATAAC-T-GGTCTGCTTAGTTCACAAAATAACAAATCTGAATCTTTTACATTTAAACTGAAA
TCTTCTAGGAACTGAAGAATTTCAACAGAATAACTTGAACCACTAGGC--------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------TGCAACCTGAGAAGATGTGT
TCTCTCTTTCCCTCCTAAACTGAGCAACAGCA------------------------------------------------
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>chr1A_1070
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------------------------------------------------GCGGCTCTGAAGGCAGGCAGGCGATTGTCGCG
CTCGCGCCGGCGGCGGTTCAGGGAGGACAACATGGCGGCCT-CGTGTGGGTGAGCGGTGACCGCAACCCCGTTCATCCTG
GATGACGCCTTCGTGCGCGGGGC--------------------GAGTGGGTTCCAGTGCGGCCGCATGATGCACGGCATG
CTCGTCGCCTCCCTCTTCCCCGCCCTCACCGCCTCCAACTTCGTACACTCTCTCTCT----CCCTGTC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TTTGGCATTCCGTTGAACAGGTGTTTTGCGTGGCG---GGTCGATGGGA-G
CCCGCCTGATTTGACCAGTGCTTCTTCGTGTT--GATGCAGCCTGGGGCCGTGTACATGAGCCAGTCGTTCAAGTTCGCG
GCACCGGTGTATGTCGGAGACGAGGTGGTCGCGCAGGTGCAGGCGCTCCATATCAAGGCCGCCGACGCAAGGCACATGTA
GTACT-ACTAGCAC---CAA--------TTTGCATCTCGTCTTCTTTCTTGCCTTGTTCTTGCTGACAACTAATGGTA--
---AT-----ATCTGTTGGGCAGCGTCAAGTTCGCCACCAAGTGCTTCACGGACGATGAGGAGACTCTGGCCATTGACGG
CGAGGCCATGGC-TTTTCTGCCCACGCTGCAGCTCAGCACAGAGGCGATGGAGTGACATGTTTGTT-----CATTTGACG
CTACCGAAGTAGATGCTACGATCGATCAATTTGGAATGGGGTGATTCTTATCTCATGATGAACCATTTCGCCTTCACAAA
AGCTTGAGGCCTTGGGGACATTAGACTGCAATTTTGTT------------------------------------------
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>chr2D_1075
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-----------------------------------------------------GCTGAAGGTGGGCGAGGCGCT---GCG
CGCGCCCCGGCGGCTGTTCACGGAGGATG-CGTGGCGGCGTACGCCGGGGTGAGCGGCGACCGCACCCCCGTCCA-CCTG
GACAACGCCTTCGCGCGCGGGAC--------------------GGGCGGGTTCCAGCGCGGCCGCGTGGTGCACGGCATG
CTCGTCGCCTCCTTCTTCCCCGCCCTCATCGCCTCCCACGTCGTACGCTCCTTTCCT----TCCCCTC------------
--------------------------------------------------------------------------------
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-----------------------------TCTGCCATTCCGCCGAACGGCTGGCGGGCATGGCGCCCGGTCGATGGGATC
CCGCCCTGATCTGACGGCTGCTTC-TCGTCTT--CATGCAGCCTGGAGCCGTGTACGTGAGCCAGTCTCTCAAGTTCACG
GCGCCGGTGCACGTCGGAGACGAGGTGGTCGCGCAGGTGCAGGCGCTCCACATCAAGGCCACCGGCGCAAGGCACGTGTA
CTACT-ACCACTACAACGTAGCGCCATTTTTGTATCTCCTCTTCTTTCTAGCATTGCGCCTGCTGAGAACTAATAGTAAT
GCTAT-----ATCTGTTGGGCAGCGTCAAGTTCGCCACCAAGTGCTTCACGGACGATGAGGAGACTCTCGCCATTGACGG
CGAGGCCATGAC-TTTTCTGCCCACGCTGCAGCTCAGCGCAGAGGCAATCGAGTGACAAGTATGTT-----GATTAGAAC
C---------------------------ATTTCGAATGGGACGACTTTTATCTCATGATGAACCATTTCACCTTCGCATA
AACTTCGGGGCCGGGGAACATGAGATTGCAGCTTTGTCGGTAATATTTCGTTGCAGTCTTCCTGTTATGATTGATAGCAT
GAGCAAAGAGTAGTAGATCACTTCAGTTTTCTGAACATTCAATGGGCTGGGTGTACATGCCGACTGTGATAGGAACTGAA
GAATTTCAACAGGTTAACTTGAATCACTAGGCATATTCAGTACTAGATCACTTCAGTCTGCTCAGT--------------
-------------------------------ACTACTTCTTGCTGCTGCTCCATACTATTTCTGCCGTTGCTCTATTGTG
GAGAGAGGAAGAAAGGAAATAAC-TCGGTCTGCTTAGTTCACAAAATAACAAATCTGAATCTTTTACATTTAAACTGAAA
TCCTTTAGGAACTCAAGAATTTCAACAGAATAACTTGAACCAC-------------------------------------
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>chr6A_1181
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---GACGCCTTCGCGCGCGGGAC--------------------GGGTGGGTTCCAGCGCGGCCGCGTGGTGCACGGCATG
CTCGTCGCCTCCCTCTTCCCCGCCCTCATCACCTCCCACGCCGTACGCTCCTTTCCTCCT----CCTC------------
--------------------------------------------------------------------------------
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-----------------------------TCTGCCATTCCGCCGAACGGCTGGCAGGCATGGCGCCCGATCGATGGGATC
CCACCATGATCTGACGGCTGCTTC-TCGTCTT--CGTGCAGCCTGGTGCCATGTACGCGAGCCAGTCCCTCAAGTTCGCG
GCGCCCGTGCACGTCAGAGACGAGGTGGTCGCGCAGGTGCAGGCGCTGCACATCAAGGCAACCGGCGCAAGGCACATGTA
CTACT-ACCACTACTACATAGCGCCATTTTT-TATCTCCTCTTCTTTCTAGCATTGTGCCTGCTGAGAACTAATAGTGAT
GCTAC-----ATCTGTTGGGCAACGTCAAGTTCGCCACCAAGTGCTTGACGGACGATGAGGAGACTCTCGCCATTGATGG
CGAGGCCATGGCTTTTTCTGCCCACGCTGCAGCTCAGCGCAGAGGCAATCGAGTGACAAGTATGTT-----GATTAGAAC
C---------------------------ATTTTGAATGGGACGGCTTTTATCTTATGATGAAACATTTCGCCTTCGCATA
AACTTTAGGGCCGGGGGGCATGAGATTGCAGCTTTGTCAGTAATAGTTCGGTGCAGTCTTCCTGTTATGATTGATAGCAT
GAGCAAAGAGTAGTAGATCACTTCAGTTTTCTGAACATTCAATGGGCTGGGTGTACATGCCGATTTTGATAGGAACTGAA
GAATTTCAACAGGTTAACTTGAATCACTAGGCATATTCAGTACTAGATCACTTCAGT-----------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------
>SNPs
-----S--------------S--S------------------------------------------S-------------
----------------------------------------------------------S-------------------S-
---------------------------------S------------------------------------S-S-------
-------------------------------------------------------------S---------------SS-
----S-----------------------------------------------------------------------SS--
----------------------------------------------------------------S---S--------S--
S-S----S-S-S---SSSSSSS-------S---S--S-SSSS-SSSSSSSSSSSSSSSSSSSSSSS---S------S--S
------SSSS----S-----SS-----S--S---SS------SS------------------------------------
-----S------------------S------S-------S---S---------S--S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S------------------------------------------S----S-----------S--S-
S--S--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
------------------------S---S------------S------S------------------S-SSS-S-SSSSS
SSSSS-SSS-SSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
----------------------S--------------------------------SS---S--S---------S-S----
--S-S---S----------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------S-----------
S---S---------------------------S---SS------------------------------------------
-------------------------------------------------------------------------------S
-----S----------------------------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S--------------S---
--------------------------------------------------------------------------------
----------------------------------------S----------------------------------S--S-
----------------------S-------------S------------------------------S------------
------------SS--------------------------S-----S---------------------------------
---------------S----------------------------------------------------------------
-----------------------------------S------------S------------------S------------
----------S--S----SSSSSSSSSSSSS-------------------------S-----------------------
-----S------S----------S----------------S----------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------SSS--S---------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_581
--------------------------------------------------------------------------------
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-GGACGCAGGTGGCTATCTTT-----------------------------------------------------------
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>reverse_3912
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-----------------------------------------------------------------------AGAGCTGAT
GTGGCGGAAAA---------------------------------------------------------------------
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-----------------------------------------------------
