>input_sequence_72132
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-----CCATAAATAGACGTGCGTTTTGGTTGCCCGCGGTTACCGCAGCAAGGCAGCATATAAGATCTGCGTCTCCTGTGT
CACCTTCTATTCACCTTATCTCACCTCACCTAGCTAGCAACAGAGACCAAATCTCTGCGTCTTGCGGCGATCTTTCTTTC
ACCAGAAGC-GGGGGGCGATGGAGCCGATGGCGATCATGACGGTGACCGGCGGCGTGCTCGGGCCGGTCTTCGTGCTGCT
GTCGCGGATCCAGCCGGTCGTCGACTTCTTCCGGCGGCTCTGCGACTGTCTCCGCCACCCTAGCCGCCGCCCCGCCAGGC
CGGTCGTAGCACCGTGGAAACGTCAGGCTGCACAAGAGTGATATTTT-CTATGGAATTTTTCTGTTCTAACAGAAAGAGA
GAGATAGGTGTTAACTGTGGATGGATGGATGGATGATTGAACCACATATATGC-GTACGTGACTGCATGTTCTTGCTTTA
CCGGGTGTACGTATATATC-----TACATATGCT---TATGGGAACAAAATTGCTATTCCTACTCTTAACTTGTGCAAAC
AAATTACGGAAACACTAAAAATCTGACGTCGGATTTTTAGGTATGACAGATCTAACACTTTTCATGACAGTTTATATTGG
TGAGATGATGAAAAATTTAGTTTGCAAGCACGACAATTTTCTAACAAAAA------------------------------
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>chr5D_1_TraesCS5D01G174300
CTGACTTTTTGGGGTGGTGGTCCAGTTGATCTGACTTTGTAGCTGCTGATGAGCCCCATCCAGCCATGACACAT------
-TGGCGAGGTTTCTGATTTGAACCTACTGTATTTGCTGGCCAT--CGCAGGTTATGGACTACGCGTCACTCCCGCACTTC
TGCAAGAGGGAAGGGTCCGGTTCGGGTTCGTCGTCGGATGAAGTCGACTGCTACTCGTATGATCATCCATTCCACCAGGA
GCTGTACAACTATGTGAAGCAGCAAGCTCTGAGGAACCAGGACAGCGTCGGCCCCGCGAAGCAAGGGTCGATGCATGTGA
GGGTGCCGACGCCGGACCTGGAGGAGGCCAAGATCATGGAGACGATCCAGTCGGAGCTCCACAACCTCAAGGGGGGCGAC
GGCATTTCCCGCTCCTTCAGCAGGATCACCATCGAAGGTCCATGATATC-TTATTTCCTGCTCGTATCCAAGATCGTCGT
GGATGTGATCCATGATGATCGGAGTGCCTCGAGATGCGCGGAGCAGGTAATCGCTTATTTTATCTTATTTGACGCCAGAA
GATTATTCTGGGGTTTATAACGGTTCTTGCTTGCGTTGTAACCGCTGGCTGCAAAGCTCGAGTAGG-----ATCATATCA
GTAGAGGAAG------TAGCAGCAGTAG-----------CATCGGATTCTAATAACCGAGTGAGTCTGTATCGTGGTGTC
GAAGATGGTAGTAATTAGTT-TGATTAACCTGTCTA----ATGGATGTACCATTTGCGAGTTACTGTTTCCAT----GCT
TCTCATGGCAGGGAAATTGCCATGCTCCCAGACATGAGTAACACCAGCACTATGTATCGGACCA---ATCAGTATATAGT
ATATGTATGTATATGTAATCGCCTTCTGATGTTGCAACTGGTATAT-CATTATGTATTTGATTTGATGTTACCTGAACCA
CGACTTAAAAAGAAATCTGCTGTCTGTTTCAACCTGCATGCACTGAATCAGATCTTGGCCAAGCACTGATAACTGCTCCC
TCCCTCCATAAATAGACGTGCGTTTTGGTTGCCCGCGGTTACCGCAGCAAGGCAGCATATAAGATCTGCGTCTCCTGTGT
CACCTTCTATTCACCTTATCTCACCTCACCTAGCTAGCAACAGAGACCAAATCTCTGCGTCTTGCGGCGATCTTTCTTTC
ACCAGAAGC-GGGGGGCGATGGAGCCGATGGCGATCATGACGGTGACCGGCGGCGTGCTCGGGCCGGTCTTCGTGCTGCT
GTCGCGGATCCAGCCGGTCGTCGACTTCTTCCGGCGGCTCTGCGACTGTCTCCGCCACCCTAGCCGCCGCCCCGCCAGGC
CGGTCGTAGCACCGTGGAAACGTCAGGCTGCACAAGAGTGATATTTT-CTATGGAATTTTTCTGTTCTAACAGAAAGAGA
GAGATAGGTGTTAACTGTGGATGGATGGATGGATGATTGAACCACATATATGC-GTACGTGACTGCATGTTCTTGCTTTA
CCGGGTGTACGTATATATC-----TACATATGCT---TATGGGAACAAAATTGCTATTCCTACTCTTAACTTGTGCAAAC
AAATTACGGAAACACTAAAAATCTGACGTCGGATTTTTAGGTATGACAGATCTAACACTTTTCATGACAGTTTATATTGG
TGAGATGATGAAAAATTTAGTTTGCAAGCACGACAATTTTCTAACAAAAAA--TAAAATAATAAACTCAGGCGTATTTGC
CATGTTCGTCAACTAAA--TGTCATCCTCAAAAAACATAATTTGCCATAGT-AAAAAATCTGACGTCAGATTTACAATGG
AGTCCACAAATTAAGTACCGTGAGAGAAAGCAATAATCATCTGAAAGAAAACGTGGCAATAACCGGGTGTTGTAAAGCAA
GTACGTACTT------ATGGGTGTTAGGCTCCCCATGATATCATACGAAAACCAACATTCGGTGAAAGCCGATGAAAACC
AGGGTATATTAACACCATGAAAGAAATACCGCTTTCGTTAAGAGACAGACACAAACATAGAGAGA---------------
----------GAGGAGGACGACGACCAGGCTGCGCCGGCGATGAACTAAACTAGGCG-----------------------
-----CATATTCTGAGAATGCCACTTAATAGCATTTTAGGTCGCAA------------ATGATGCATTTTGGCCACCGAA
TATATGCACTATAGTCGTTAACTAGTAATATATACTATTTCCTATGTAAACTAATATAATATAAGACATTACTTTAGTGA
TAAAAAACGTCTTATATTATTTTATAGAGAGTAGTTGATAATTATCATGCTAATACATGTTTTTGGTTAGATTAAATTCA
GCTTAAATTGCCCCATAAATTTGTAGGAAATGACAGCAAAAGAAGAAGGCAGCCGTTTGGCAACACTGTATTTACACACA
TGCCTAACAAGCGTCACTTCATATGATGGATGGCGATCGACGATACGGCGAATCTACGGTAGTTAGTCTTAGGCAATACT
ACTTAGAGCATCTACAATCACAACTCACAAATTCCATCCAACAAACGCTCGCGGATGCGCCCGGACGCTTCCGCGGACAA
TGACCAGACAACACACTAAAAGTCCTTTCCACGACCAGATACCTCATTTTCGAGTCATCAAATCCATACAATTACATGCA
ACGTAAACCTAGTCTAAATATGCGCCGAAGACCGTCCTTGTTGTTTCGCTCTGTCCACGTCTGACGGATGGGTAAGCCCC
TCGAAG
>chr5B_16
---------------GGTGGTCCAGTTGATCTG-----GTAGCTGCTGATGAGCCCCATCCAGCCATGACACAT------
-TGGCGA-GTTTCTGATTGAAACCTACTGTATTTGCTGGCCAT--CGCAGGTTATGGACTACGCGTCACTCCCGCACTTC
TGCAAGAGGGAAGGGTCCGGTTCGGGTTCGTCGTCGGACGAAGTCGACTGCTACTCGTACGACCATCCTTTCCACCAGGA
GCTGTACAACTATGTGAAGCAGCAAGCTCTGAGGAACCAGGACAGCGTCGGCCCCGCGAAGCAAGGGTCGATGCATGTGA
GGGTGCCGACGCCGGACCTGGAGGAGGCCAAGATCATGGAGACGATCCAGTCGGAGCTCCACAGCCTCAAGGCAGGCGAC
GGCATTTCCCGCTCCTTCAGCAGGATCACGATCGAAGGTCCATGATGACCTTGTTTCCTGCTCATATCGAAGATCGTCAT
GGATATGATCCATGATGATCGGAGTGGCTCGAGATGCGCGGAGCAGGTAATCGA-----TTATCTTATTTGACGCCAGGA
AATTATTCTGGGGTTTATAGCAGTTCTTGCTTGCATTGTAACCGCTGGCTGCATAGCTCGAGTAGGATCATATCATATCG
GTAGAGGAAG------TAGTAGTAGTAGGAGCAGCAAAACATCGGATTCTAATAACC----GAGTCTGTATCGTGTTGTC
GAAGATGGTAGTAACTAGCTCTGATTAACCTGGCTAATGGATGGATGTACCATTTGCGCGTTACTGTTTCCAT----GCT
TCTCATGGCAGGGAAATTACCGTGCTCCCAGACATGAGCAGCACGAGCTCTATGTATCTTATCAATCAGTA-TATATAGT
ATATGTATGTATATGTAATCGCCCCCTGATGTTGCAACTGGTATAT-CATTATGTATTTGAT-----GTTACCTGAACCA
CGACTTG-AAAGAAATCTCCCGTATGTTTCAACTTGCATGCACTGAATCAGATCTTGGCCAAGCACTGATAACTGCTCCC
TCCCTCCATAAATAGACGTGCGTTTTGGTTGCCCGCGGTTACCGCAGCAAGGCAGCATATAAGATCTGCATCTCCTGTGT
CACCTTCCAT---------------TCACCTAGCTAGCAACAGAGACCAAATCTCTGCGTCTTGCGGCCATCTTTCTTTC
ACCAGAAGC-GGGGGGCGATGGAGCCGATGGCGATCATGACGGTGACCGGCGGCGTGCTGGGGCCGGTCTTCGTGCTGCT
GTCGCGGATCCAGCCGGTCGTCGACTTCTTCCGGCGGCTCTGCGACTGTCTCCGCCACCCTAGCCGCCGCCCCGCCAGGC
CGGTCGTAGCGCCGTGGAAACGTCAGGCTACACAGGAGTGATATTTTTCTGTGGAA--TTTCTGTTCTAACAGAAAGAAA
GAGATAGGCGTTAACTG----TGGATGGATGGATGATTGAACCATATGCAGTATGTACGTGACTGCATGTTCTTCTTTTA
CCGGGTGTACGTAT--ATAGTACATACATACGCTTA-TATGGAAACAAAATTGCTATTCCTACTCTCAACTTGTGCAAAC
AAATTACGGAAA----AAAAATCTGACTG-GGATTTTTAGGAGTGATAAATCTGACGCTTTTCATGATGGTTTATATTGG
CGCGATGATGGCAAATGTAGTTTGCAAGCACGGCAATTTTCTGACAGAAAAAATAAAATAATAAACTCAGACGTATTTGT
CATGTTCGTCAACTAAACTTGCCATCCTCGAAGAACAAAATTTGCTATGGTAAAAAAATCTGACATTAGATTTATAGTGG
AGTCCACAAATAACT-----------------------ATCTGAAAGAAAACATGGGAATAACTGGGTGTTGTAAAGCGT
GTACGTACTTATGGAAATGGGTGTCAGGTTCCCCGTGTTATCATACGAAAACCAACATTCGATGAAAACCGGCAAAAACC
AAGACATATGGAACCATAAAA--AAATACCGCTTTCGTTAAGAGACAGACACATACAGAGAGAGAGAGAGTAAGAGAGAG
AGAGAGAGAGGAGGAGGAGGAGGACCAGGCCGGCGCACCG----ACTAAACTAGGCGGTTCTAGCAATGTCGAATAGCGA
CATTGCATATTTTGAGAATGTCACTTAACAACATTTTAGGTCGCAAAATATATGTAATATGATGCATTTTAC--------
-------------------------TAATATATAGTATTTCCTTTCTAAACTAATATGAGAAGTTTTAGATCATTA----
---------------------------AGAGTAGTTGATAATTATCGTGCTGATGCATGTTTTTGGTTAGATTAAATTCA
GCTTAAATTGCCCAATAAATTTGAAGGAAATGACAAAAACAAAATGAAGGCCGCCATTGGCGACACTGTATTTACACACA
TGCCTAACAAGCGTCACTTCATATGATGGATGGCGATCGACGATATGGCGACTCTACTTGAGTTAGTCTTAGACAATACT
ACTTAGAGCATCTAAAATCACAACTCGCCAATTCCATCCTCCAAACGCCCGCGGACACGCACAGACGCTTTCGCGGACAG
TCACCGGACAACACACTAAAATTCCGGTCCACAATCGGGTACCTTATTTCTGAATCATCAAATCCATACGATTACATGCA
ACATAAACCTAGTCTAAAATTGAGCCGACGACCGTCCTTGCTGTTCCGCTTTGTCCATGTCTGACGGCCGGCTGAGCCCC
TCAAAG
>chr5A_16
---------------GGTGGTCCAGCTGATCTGACTTTGTAGCTGCTGATGAGCCCCATCCAGCCATGATACATGATACA
CTGGCGA-GTTTCTGATTAAAACCCACTGTATTTGCTGGCAATCGCGCAGGTTATGGACTACGCGTCACTCCCGCACTTC
TGCAAGAGGGAAGGGTCCGGTTCAGGCTCGTCGTCGGATGAAGTCGACTGCTACTCGTACGACCATCCATTCCACCAGGA
GCTGTACAACTATGTGAAGCAGCAAGCTCTGAGGAACCAGGACAGCGTCGGCCCCGCGAAGCAAGGGTCGATGCATGTGA
GGGTGCCGACGCCGGACCTGGAAGAGGCCAAGATCATGGAGACGATCCAGTCGGAGCTCCACAGCCTCAAGGGAGGCGAC
GGCATTTCCCGCTCCTTCAGCAGGATCACCATCGAAGGACCATGATGGTATTATTTCCTGCTCATATCCAAGATCGCCAT
GGATGTGACCCATGATGATCGGAGTGCCTCGAGATGCGCGGAGCAGGTAATCGCTTATTTTATCTTATTTGACGCCAGGA
AATTATTCTGGGGTTTATAGCAGTTCTTGCTTGCATTGTAACCGCTGGCTGAAAAGCTCGACTAGG-----ATCATATCG
GTAGAGGAAGCAGCAGTAGTAGTAATAGTAGTAGTAAAACAACGGATTCTAATAACCGAGTGAGTCTGTATCGTGTTGTC
GAGGATGGTAGTAATTAGTT-TGATTAACCTGGCTA----ATGGATGTACCATTTGCGTTTTACTGTTTCCATCCATGCT
TCTCATGGCAGGGAAATTACCATGCTCCCAGACATGAGTAGCACCATCTCTATGTATCGTATCAATCATCAGTATATAGT
ATATGTATGTATATGTAATCGCCCTCTGATGTTGCAACTGGTATTACCATTATGTATTTGGT-----GTTTACCTG----
-------AAAAAGAATCTGCTGTCTGTTTCAACTTGCATGCACTGAGTCGGATCTTGGCCAAGCACTGATAACTGCTCCC
TGCCTCCATAAATAGACTTGCGTTTTGGTTGCCCGCGGTTACCGCAGCAAGGCAGCATATAAGAT-----------GTGT
CACCTTCCATTCACCTCACCTCATCTCACCTAGCTAGCAACAGAGACCAAATCTCTGCATCTTGCGGCGAGCTTTCTTTC
ACCAGAAGCGGGGGGGCGATGGAGCCGATGGCGATCATGACGGTTACCGGCGGCGTGCTCGGGCCGGTCTTCGTGCTGCT
GTCGCGGATCCAGCCGGTCGTCGACTTCTTCCGGCGGCTCTGCGACTGTCTCCGCCACCCTAGCCGCCGCCCCGCCAGGC
CGGTCGTAGCGCCGTGGAAACGTCAGGCTGCACAGGAGTGATATTTTTCTATGGAA-TTTTCTGTTCTAACAGAAAGAGA
GAGATAGGTGTTCACTG----TGGATGGATGGATGATTGAGCCATATGCAGTATGTACGTGACTGCATGTTCTTGTTTTA
CCGGGTGTACGTAT--ATA-----TACATATGCTTATTATGGAAACAAAATTAATATTCCTACTATCAGCTTGTACAAAC
AAATTACGGAAACA------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSS-----------------------------------------------------------------
-------S----------SS------------------------------------------------------------
-----------------------------------------------------------S--S-----------------
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---------------------------------------------------------------S---------S------
----------------------------------------------SS---------------S--------------S-
------------------------------------------------------------------------------S-
S------------------S-S------------S--------------------------------------------S
-------------------S--S----------------------------------------------------S----
--------------------------------S-------------------------S---------------------
------------------S---------------------S-------S----------S-S------------------
-----------------------S--------------------------------------SSSSS-------------
------S--------------------------S----------------------------------------------
---------------------------------------------------------------------S----------
-------S--------S-S----S--------------------------------------------------------
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----------S-----------------------S---------------------S-----------------------
-----------------SSSS-----------------------S--SS-SSS----------------------S----
--------------SS--S-----------------------S-----------------------S-------------
--------------SS-----------SSS-----------SS---S-S----S--S----------SS-----------
S-S-------SS----S---------------S---------S---S-----------------------S--------S
---------------------S-------S--S----S-------S--S---------------S-S-------S-S---
-----------S-SSSSSSSSSSSSSSSSSSSSSSSSS--------------S---S------S--------------SS
------------------------S---S-----S--S-----------------------S-----S---SSS------
-S-SS----SS-SS-SSSS--SS------------------------------S---S----------------------
------------------S--S--------S-SSS-SS--SSSS------------------------------------
-----------S--------S-------S-S---------------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---------S--------S-S-----------S-S-SSSSSS-SSS-S---SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S----S--S-------------------------
-------------S---------S-----------SS--S-S--SS-S-SSSS-SS-----S------------------
---------------------------------------------S-----S-----SSS------------S-------
--------------S-----------S-S----------SS-------S------SS---S-S-------S--------S
-S---S---------------S---SS-----S-S-S-S-----S----SS--S---------------S----------
--S---------------SS--S-----S-----------S----S----S------S---------SS--S-S------
--S---
>forward_479
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----------------------------------------------------------TGCTCGTATCCAAGATCGTCG-
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>reverse_1492
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---------------------------------------------------GCGTACGTGACTGCATGTTC---------
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>forward_1128
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--------------------------------------------------------------------CGTCTCCTGTGT
CACCTTCT------------------------------------------------------------------------
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>reverse_2761
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----------------------------------------TTGTTTCGCTCTGTCCACGT--------------------
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