>input_sequence_72103
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---------------------------------------------------CTCCTCTCTACTCCCTTCTAGGGTTGTGC
TGTACCGCTTAAATCATTTGGGTGGGAAATTGGGGGCACCGCCGTACGCATCAATTCTCCTAGACAACTAGAATACACAA
GCTAGCTAGCTAGTTCGCACCTGCTGAGACCCCCGTTCGCACCACCTTTGAGCCTTTTCCGCCGGCCGGCCGTTCGCCAT
ATGGAGTCCAACGGCGGCGAGGGAGAGGGCGACATCGACCTCAACCTCTCCCTGCATCGGGCGTCGTCGCCGGAGCCGCT
GGGCTACTTCACCTGCACCTACTGCAACAAGAAGTTCTACTCCTCCCAAGCGCTGGGCGGCCACCAGAACGCCCACAAGT
TCGAGCGCAGCGTCGCCAAACGCACGCGGGAGCTGGCCGCCGCGCGCCGCCACGGCCACGTGGGCCAGGTCGGCGCCGGC
GAGGAGGCCAGCAGGAGAGGGAAGGACCCGACCAGCAATGCCGCCGGGAGCTCCTCGCACAGGAGGGCGTCTCCGCCGGA
GGCAGCCCGCCGGGACCTCATCGCCGAGGAGATCGATCTGTCTCTCAAGCTCTGA-ATTACTGGATCGAGGTTCTTGTCA
CTGCAAACTTATGGTCTATTCGCCTTATTACTGGGTTCTTGTGATTTCTTACTCATTTTATGTCTAGAATGAAAGTATGA
AACCTCG-------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G217400
CATGAGCTAATGATTTTATTCTAGTTGATTGTTGTGTTACATATTTGGTACCATCCATACAACGACCCAATATCCACCCC
TATGCTTACGTTTCACACTATTGTTTGCTCTCTTTAAATTACTTGTACTTCCCAACTGCGAGTTC-TTTTTTCTGCTTAT
ATTACTTTGATGCTACATACACCACTCCATTCACCATATTATCATTGTTACTAATAATTTCTTTGAGCAAGTACTCTTTT
CAGGTGTGGTTGAATTGACAATTCAATTGCCAAAGTTTACACGTATTCTCTCGCTTCCATCATGTCGAATAGAAATTAGG
GTTGAAATACTGTCCAACAAAAGTTGTTGTGCTCCCCTATATTTTGTGGGCTATCACATACTACCATATACAGTGAGAAG
GTGATTTGTACTCCTTCGGGTCCAAAAAAGGAATCCTTGATCTCTTTATCATAA---------TGGCGCATGCATCCCAA
ATATGAAGAGTAGTGTCTCAGTCTTACAAGTGTATCCAGCATCCAAGAAAAAAGAAATAAAAACAGAGTGAGCCTCATCT
CTCAACGGTTAGACGAGCAACCGCGAGAATCAGAAACAAA-CACTCAAAGCTTTATAATTCTTAAGTAAACATATCTCCT
TTTCTTTAGCCATTTTTTTGCGATATTCTAACTATTTGATTGATGAGTGGCTGTACAATTCTCACGTGAAAATATTGCGG
ATACTTGAGAAATGAGCAAGCTCCGGGGCATACGGTGACGGTCAGACCAGTGGTTGAACAATTCTTTCTTTGGCGTATGT
CCACAGCTTTCGGTCCAAGATCCAGCGGACAGCAGCACCCCAATCTGCTGGCAAGCAATCCTATTCGTCTACTGGCTGAT
CCATCGGTACATGAAATCTCTTGTCCTTTTCATCGTTTTTCTCTTTCTCACCCTGACAGATCCTGCACAGTACGTGTGCT
CCTTAGAACAAGCGTACAATATATACTACCCTCGTACACCTACTTCCTCTCCTCCTCTCTACTCCCTTCTAGGGTTGTGC
TGTACCGCTTAAATCATTTGGGTGGGAAATTGGGGGCACCGCCGTACGCATCAATTCTCCTAGACAACTAGAATACACAA
GCTAGCTAGCTAGTTCGCACCTGCTGAGACCCCCGTTCGCACCACCTTTGAGCCTTTTCCGCCGGCCGGCCGTTCGCCAT
ATGGAGTCCAACGGCGGCGAGGGAGAGGGCGACATCGACCTCAACCTCTCCCTGCATCGGGCGTCGTCGCCGGAGCCGCT
GGGCTACTTCACCTGCACCTACTGCAACAAGAAGTTCTACTCCTCCCAAGCGCTGGGCGGCCACCAGAACGCCCACAAGT
TCGAGCGCAGCGTCGCCAAACGCACGCGGGAGCTGGCCGCCGCGCGCCGCCACGGCCACGTGGGCCAGGTCGGCGCCGGC
GAGGAGGCCAGCAGGAGAGGGAAGGACCCGACCAGCAATGCCGCCGGGAGCTCCTCGCACAGGAGGGCGTCTCCGCCGGA
GGCAGCCCGCCGGGACCTCATCGCCGAGGAGATCGATCTGTCTCTCAAGCTCTGA-ATTACTGGATCGAGGTTCTTGTCA
CTGCAAACTTATGGTCTATTCGCCTTATTACTGGGTTCTTGTGATTTCTTACTCATTTTATGTCTAGAATGAAAGTATGA
AACCTCGCATAGAGCTTCTTCTCCCTTTCCTTTTGCTGTC-TTTTTTTACCGGGTCATAATTTACTATATCAGTACTACT
ACTCATAAGGCATAAGCAAGGCAAAGACATACTATGGTGATATGCACTGCTCCAGAATGGCCGCATACGATATGTTACAA
AGTTACTGCCCAAGTTACAAGGATGAAAACAGCATATAACTAGGCGAGACATGGACACATGCAGTACTAGCCATGC----
-AGCGAAGCAGCTGCAGGCGTAGCATCATAGCCAACAGATAGCTAAGCCTCATCAATAATTCTTGTAAAGCAAATCTGTG
GGTTATTCTCTGTAGGTGTGTGGTCCAGTTGGCCTTCCAATAGGATAGGATCCCCCTGTCGCTGCTGCTCCTTGTTCTGT
ACCGTGCATAAAACACGTGACTTATTACCTTCCTCTGTCGTTATTGGGATAGTGATACCAACTGAATAACTGTAATAATT
TGGAGTGATGGGGAGGTTGCAACAGGTGGTTGTGCTGGCGATGCAGAAGAGAAAAGCTTGTGGAAAAGGA--AAAAGCAG
CAGGAATAAAATCCCAATAAATTATTTCTTGGACACAGAATCCCAATAAATTCTTCCCTATGCCTTTTTTGCAAAGCCAA
TTCTTCTCTATGTAGATGTTCACATCGAAACATCCATCTCTTGTTTTTTCAAAAAGGAGGTTTA-CCCGGCCTT-CGCAT
CATGCGGTGCACACATCCATAACCTTCACCTCTTGTGGTTGTGAATAAATACAAATAATAATCAAATGATGTACTGTATT
GTGCACTACAGGAAAATCACATGCTACCGAGTATTAACGTGTAAGCCGAGTGTTAAAACACGGGTTCTCGGCTTAAATCA
ACCTAAGCCGAGTAGTGACCGGATAATACATAGCAAAAAATAGGTACTCGGCTTCCATACGAGTAAGCCGAGTGTGTGCA
CAAAACGCTCTCTGTGCATGACCGATACTCGGTATATAGGAGGAAAGGCACTCGGCT
>chr5B_1
CATGAGGTAACGATTTTATTCTAGTTGATCATTATGTTACATATTTGGTATCATCCATATAACGTCCCAATATCCACCCC
TGTGCTTACTTTTCACGCTATTGGTTTCTCTCTTTAAGTTACTTGTACTTTGCAACTATCGGTTGTTTTTTTCTGCTTAT
GTTACTTTGATGCTACAAACACCACTCCATTCATCATCTTATCATTGTTACTAATAATTTCTATGAGCAAGCACTTGTTT
CGGGTGTGGTTGAATTGATAACTCAACTGTCAAAACTTACAAGTATTCTCTCGCTTCCATCATGTCGAATAGAAATTAGG
GTTGAAATACTTTCCAACGAAGGCTGTTGTGGTCTCCTATACTTTGTGGGCTATCACATGCTACCATATATAGTG---AG
GTGATTTGTATTCCCTCAGTTCCGAAATAAGTGCCATGGA----------------------------CATACATCCCTA
TTATCAAGACAAGTCT----GTCTTACAAGTGTATCCAGCATCCAAGAAAAAATAAATAAAAACAAAGTGAGCCTCATCT
CTCAATGGTTAGACGAGCAACCGCAAGAATCAGAAACAAA-CACTCAAAGTTTCATAATTCTTAAGTAAACATATTTCTT
TTCTTTTAA-CATTTTTTGCGATATTTCTAACTATTTAATTGATGAGTGGCTGTACAATTCTCGCGTGAAAATATTGCGG
ATACTT-------GAGCAAGCTCTGGGGCATACGGTGACGGTCAGACCAGTGGGTGAACAATTCTTTCTTTGTCGTAGGT
CCACAGCTTTCGGTCCAAGATCCAGCGGATAGCAGTACCCCAATCTGCTGGCGAGCAATCCTATTCGTCTACTGGCTGAT
CCATCGGTACATGAAATCTCTTGTCCTTTTCATCGTTTTCCTCTTTCTCACCCTGATAGATCCTGCACAGTACGTGTGTT
CCTTAGAACAAGCGTACA----ATACTACCCTCGTACACCTACTTCCTCTCCTCCTCTCTACTCCCTTCTAGGGTTGTGC
TGTACCGCTTAAATCATTTGGGTGGGAAACTGGGGGCACTGCCGTACGCATCGATTCTCCTCGACAACTAGAATACACAA
GCTAGCTAGCTAGTTTGCACCTGCTGAGACCCCCGTTCGCACCACCTTTGCGCCTTTACCGCCTGCCGGCCGTTCGCCAT
ATGGAGTCCAACGGCGGCGAGGGAGAGTGCGACATCGACCTCAACCTCTCCCTGCATCGGGCGTCGTCGCCGGAGCCGCT
GGGCTACTTCACCTGCACCTACTGCGACAAGAAGTTCTACTCCTCCCAAGCGCTGGGCGGCCACCAGAACGCCCACAAGT
TCGAGCGCAGCGTCGCCAAACGCACGCGGGAGCTGGCCGCCGCGCGCCGCCACGGCCACGCGGGCCGGGTCGGCGCCGGC
GAGGAGGGCAGCAGGGGAGGGAAGGACCCGACCAGCAATGCCGCGGGGAGCTCCTCGCACAGGAGGGTGTCGCCGCCGGA
GGCAGCTCGCCGGGACCTCATCACCGAGGAGATCGATCTGTCTCTCAAGCTCTGATATTACTGGATCGAGGTTCTTGTCA
CTGCAAACTTATGGTCTATTCGCCTTATTACTGGGTTCTTGTGATTTCTTACTCATTTTATGTCTAGAATGAAAGTATGA
AACCTCGCATAGAGCTTCTTCTCCCTTTTCTTTTGCTA---TTTTTTTACCGGGGCACAATTTACTATATAAGTACTACT
ACT-------CATAAGCAAGGCAAAGACATACTATGGTGAGATACACTGCTCCAGAATGGCCGCATACGGTATGTTACAA
AGTTACTGCCCGAGTTACAAGGATGAAAACAGCATATTACTAGGCGAGACATGGACACATGCAGTACTAGCCATGCCATG
CAGCGAAGCAGCTGCAGGCGTAGCATCATAGCCAACAGATAGCTAAGCCTCATCAATAATTCTTGTAAAGCAAATCTGTG
GGTGGTTCTCTGTAGTTGTGTGGTCCAGTCGGCCTTCCAATAGGATAGGATCCCCCTGTCGCTGCTGCTCCTTGTTCTGT
ACCGTGCATAAAACACGTGACTTATTACCTTCCTCTGTCGTTATTGGGATAGTGATACCAACTGAATAACTGTAATAATT
TGAAGTGATGGGGAGGTTGCAACAGGTGGTTGTGCTGGCGATGCAGAAGAGAAAAACTTGTGGAAAAGGA--AA--GCAG
CAGGAATAAAATCCCAATAAATTATTTCTTGGACACAGAATCCCAATAAATTCTTCCCTATGCCTTTTTTGCAAAGCCAA
TTCTTCTGTATGTAGATGTTCACATCGAAACATCCATCTCTTATTTTTTCGCAAAGGAGGTTTTACCCCGCCCTCCGCAT
CATGCGGTGCACACATCCATAACCTCCACCTCTTGTTTGTA--AATAAATACAAATAATAATCAAATGATGTACTGTATT
ATGCACTACAGGAAAATTACATGCTGCCGAGTATTAACGTGTAAGTCGAGTGTTAAAACA----TTCTCGGCTTAAACCA
ACCTAAGCCGAGTAGTGACCGGAGAATACACAACAAAAAATAGGTACTCGGCTTCCATACGAGTAAGCTGAGTGTGTGCA
CAAAAGGCTGTCTGTGCACGACCGATACTCGGCATACAGGAGGAAAGGCACTCGGCT
>chr5D_1
CATGAGCTAACGATTTTATTCTAGTTGATCATTATGTTACATATTTGGTATCATCCATACAACGTCCCAATATCCACCCC
TATGCTTACTTTTCACGCTATTGTTTGCTCTCTTTAAGTTACTTGTACTTTGCAACTACCGGTTGTTTTTC-CTGCTTAT
GTTACTTTGATGCTACATACACCACTCCATTCATCATATTACCATTGTTACTA-TAATTTCTATGAGCAAGTACTTGTTT
CAGGTGTGGTTGAACTGACAATTCAACTCCCAAAGCTTACAAGTATTCTCTCGCTTTCATCACATTGATTAGAAATTAGG
GTTGAAATACTTTCCAACGAAGGCTGTTGTGCTCTCCTATACTTTGTGGGCTATCACATGCTACCATATATAGTG---AG
GTGATTTGTACTCCCTCGGTTCTTAAATAAGTGTCGTGGACCTAAAACCACGATACTGAACCCTGGTGCATACATCCCTA
TTATCAAGACTACTGTCTCACTCTTACAAGTGTATCCAGCATCCAAGAAAAAAGAAATAAAAACAAAGTGAGCCTCATCT
CTCAATGGTTAGACGAGTAACCACGAGAATCAGAAACAAAGCACTCAAAGTTTTATAATTCATAAGTAAACATAT-----
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>chr5D_622
TATTTT--------------------------------------------------------------------------
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-----------------------------------------------------------------------------CTT
TTCCTTTAACCATTTTTTGCAATATTTCTAACTATTTAATTGATGAGTGGCTGTACAATTCTCACGTGAAAATATTGGGG
ATACTT-------GAGCAAGCTCCGGGGCATACGGTGACGGTCAGACCAGTGGGTGAACAATTCTTTCTTTGTCGTAGGT
CCACAGCTTTCGGTCCAAGATCCAGCGGATAGCAGTACCCCAATCTGCTGGCGAGCAATCCTATTCGTCTACTGGCTGAT
CCATTGGTACATGAAATTTCTTGTCCTTTTCATCGTTTTCCTCTTTCTCACCCTGATAGATCCTGCACAGTACGTGTGTT
CCTTAGAACAAGCGTACA----ATACTACCCTCGTACACCTACTTCCTCTCCTCCTCTCTACTCCCTTCTAGGGTTGTGC
TGTACCGCTTAAATCATTTGGGTGGGAAATTGGGGGCACCGCCGTACGCATCCATTCTCCTAGACAACTAGAATACACAA
GCTAGCTAGCTAGTTTGCACCTGTTGAGACCCCCGTTCGCACCACCTTTGCACCTTTTCCGCCGGCCGGCCGTTCGCCAT
ATGGAGTCCAACGGCGGCGAGGGAGAGGGCGACATCGACCTCAACCTCTCCCTGCATCGGGCGTCGTCGCCGGAGCCGCT
GGGCTACTTCACCTGCACCTACTGCAACAAGAAGTTCTACTCCTCCCAAGCGCTGGGCGGCCACCAGAACGCCCACAAGT
TCGAGCGCAGCGTCGCCAAACGCACGCGGGAGCTGGCTGCCGCGCGCCGCCACGGCCACGTGGGCCAGGTCGGCGCCGGC
GAGGAGGCCAGCAGGAGAGGGAAGGACCCGACCAGCAATGCCGCCGGGAGCTCCTCGCACAGGAGGGCGTCTCCGCCGGA
GGCAGCCCGCCGGGACCTCATCACCGAGGAGATCGATCTGTCTCTCAAGCTCTGATATTACTGTGTCGAGGTTCTTGTCA
CTGCAAACTTATGGTCTATTCGCCTTATTACTGGGTTCTTGTGATTTCTTACTCATTTTATGTCTAGAATGAAAGTATGA
AACCTCGCATAGAGCTTCTTCTCCCTTTCCTTTTGCTGGCTTTTTTTTACCGGGTCATAATTTACTATATCA--ACTACT
ACT-------CGTAAGCAAGGCAAAGACATACTATGGTGAGATGCACTGCTCCAGAATGGCCGCATACGGTATGTTACAA
AGTTACTGCCCAAGTTACAAGGATGAGCATATA------------GAGACATGGACACATGCAGTACTAGCCATGC----
-AGCGAAGCAGCTGCAGGCGTAGCATCATAGCCAACAGATAGCTAAGCCTCATCAATAATTCTTGTAAAGCAAATCTGTG
GGTGGTTCTCTGTAGGTGTGTGGTCCAGTTGGCCTTCCAATAGGATAGGATCCCCCTGTCGCTGCTGCTCCTTGTTCTGT
ACCGTGCATAAAACACGTGACTTATTACCTTCCTCTGTCGTTATTGGGATAGTGATACCAACTGAATAACTGTAATAATT
TGAAGTGATGGGGAGGTTGCAACAGGTGGTTGTGCTGGCGATGCAGAAGAGAAAAGCTTGTGGAAAAGGAAAAA--GCAG
AAGGAATAAAATCCCAATAAATTATTTCTTGGACACAGAATCCCAACAAATTCTTCCCTATGCTTTTTTTGCAAAGCCAA
TTCTTCTGTATGTAGATGTTCACATCGAAACATCCATCTCTTGTTTTTTCGAAAAGGAGGTTTACCCCGGCCTC-GGCAT
CATGCGGTGCACACATCCATAACCTCCACCTCTTGTGGTTGTGGATAAATACAAATAATAATCAAATGATGTATTGTATT
GTGCACTACAGGAAAATCACACGCTGCCGAGTATTAACGTGTAAGCCGAGTGTCAAAACACGGGTTCTCGGCTTAAATCA
ACCTAAGCCGAGTAGTGACCGGAGAATACACAGCAAAAAATAGGTACTCGGCTTCCATACGAGTAAGCCGAGTGTGTGCA
CAAAAAATTCTGTGT--ACGACCGATACTCGGCATACAGGAGGAAAGACTCTCGGCT
>chr5A_1004
CTCCCT--------------------------------------------------------------------------
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-------------------------------------------------------------CTCTCTGCTAGGGTTAGCT
ACTAC----TTAATCATTTGGCTCAGAAATTGGGGCAGCGCT-----GCATCAGTTCTCCTAGACAACTAGAATACGCGA
GC---CTAACTAGCTAATTCCTGCTGAGGCCACCGTGCGCACCACCTTTGCGCTTTTACCACCGGCCGTCCGGCAAACAT
ATGGAGTCCAACGGTGGCGAGGGAGAGGGCAACATCGACCTCAACCTCTCCCTGCAGCGGGCCTCGTCGCCGGAGTGGTT
TGGTTACTTCTCCTGCTCCTACTGCACCAAGAAGTTCTACTACTCCCAGGCGCTAGGCGGCCACCAGAACGCCCACAAGT
CCGAGCGCAGCGTCGCCAAACGCACGCGGGAGCTGGCCTACACGCGCCGCCAGGGCCACGTGGGCCAGCTCGGT------
---GAGGCCAGCAGGAGAGAGAAGGACCCGACTAGCAATGCCACGGGGAGCTCCTCGCACAGGAGGGCGTCCCCGCCGGA
GGCAGCTCGCCGGGACCTCATCAACGAGGAGATCGATCTGTCCCTCAAGCTCTGATATTA--------------------
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>SNPs
----------S------------------SS--S----------------S-------------S---------------
---------S------S--------------------S------------SS-----S-SS---S---------------
S--------------------------------S----------------------------S------------SS---
--------------------------S--------S-----S--------------------------------------
-----------S------S--S-S----------S------S-----------------S----------S----SSS--
--------------S----S---S---S-S-SS--S-S--S--SSSSSSSSS-S------------S----S------S-
S---S----S-------------------------------------------------------S--------------
-----S--------------------------------------------S------------------------S--S-
--S-----S---------SSSSSSS------------S------------------------------------------
------SSSSSSS----------------------------------------S------------------S----S--
-----------------------------S-----S----------------S---------------------------
---------------------------------------S----------------S---------------------S-
------------------SSSS----------------------------------------------------------
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---------------S----------------------------------S-----------------------------
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----------------------S---------------------------------------------------------
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--------------------------------------S-----------------------------------------
---SSSSSSS------------------------------S----------------------------S----------
-------------------------------------S------------------------------------------
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---SS---------------------------------------------------------------------------
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--S-----------------------------------------------------------------------SS----
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-------S------------------------------------------S-----------------------------
-------------------------S------------------------------------------------------
-------------------------S------------------------------------------------------
-----------------------S------S-------------------------------------------------
-----S------------S-------------S---S--------------------
>forward_479
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-----------------------------------------------------------ATAATGGCGCATGCATCCCA-
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>reverse_2163
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--GAGTGATGGGGAGGTTGCAA----------------------------------------------------------
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