>input_sequence_72096
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------------------------------------------------ATGCCGTGCATCCCGGTGTCCAGCCCCAGCAT
CCAGCACCACAACCACAACCACCACCACCGAGTCCTAGCAGGCGTCGGCGTCGGCATGGGGTGCGGCGCGGAGGCGGTCG
TTGCCGCGGCCGGGACGGCAGGGATGAGATGCAGGGAGCACGACTGCGAGGTCCCGGCGGAGGTGGCGCGGCACCACGAG
CACGCGGAGCCGGGGTCCGGCCAGTGCTGCTCCGCGGTGGTGCAGCACGTGGCGGCGCCCGCGGCGGCGGTGTGGTCCGT
GGTGCGCCGGTTCGACCAGCCGCAGGCGTACAAGCGGTTCGTGCGCAGCTGCGCCCTGGTGGCCGGCGACGGCGGCGTGG
GCA---CGCTCCGCGAGGTGCACGTCGTGTCGGGCCTTCCCGCGGCGTCCAGCCGCGAGCGGCTCGAGATCCTGGACGAC
GAGAGCCACGTGCTCAGCTTCCGCGTCGTCGGTGGCGAGCACCGGCTCAAGAACTACCTCTCCGTCACCACCGTCCACC-
--------CGTCCCCGGCCGCGCCGTCCAGCGCCACCGTCGTCGTGGAGTCGTACGTCGTGGACGTGCCGGCGGGCAACA
CGATCGAGGACACCCGCGTGTTCATCGACACCATCGTCAAGTGCAACCTCCAGTCGCTGGCCAAGACCGCCGAGAAGCTC
GCCGCCGTGTCGTGA-----------------------------------------------------------------
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>chr4B_1_TraesCS4B01G189800
GGACAGGTGCTACGCTGAGTCATGCCTGATTGGCAAGTGCTACGCATGACAGATCTTGCAAAGACTTCGCGTTTGACGGA
TGAGCGCAGGGCGGTGGCGCCGTTAGGCGCCATGGTGGCGTCAACGGATGTCCGAACTGGCAAGGATGATGCGGATCTCT
CCTGAAGATGGGTCAGTGGTCCAATGATGATGGCGGCTCCTAAAACGTGTGCATGTGATGTGCGCTTTAGTAGGCTGCAC
CGAATGTTGATCTCGATACGTTATGTGGATGGATCGGCGACGACACCGGTTTTAGATATGGGGAGTGAGAGCACTCCCCA
TTATTAAGTTTGTAGGCGTGAGTGATGGTTTCGGGTGGATTGATGTATGTTCTTGTCAGACGTTTGTGCAATAATTAATA
AAGATGGCTGCATGCATCGATTGATGCAGAGGCAGGGGTTTAACCTCCTTTTTAAAAAAAACTGGTAAGCAATGATATTA
CCCCAGTGGCATGTGGTGAAATAATGGAATTTAGTAATCATTAACCATGGTGTTTGTGTGGGTGTGGATTAGTCCGCTTT
ATTAGCAAGTGTAATAATGGAGAGCAGATCAAACAAGCAAGAGGCCGGCTGGTCTCTTGCTGCAAGTTGGCCAATTTGCT
CCAAAATTAAAAGGAAACCAATTAATTGAACAGATCAAAGGACAACCTCCTCCATGCAAGTTGGCCAATTTGCTCCGGAA
TTTAAACCTTTAGAGTACAA-TCAATCAATTAACAAAACAAAGAGCAGACGCAAGTATACATTTGGAAAACACAAGTGGG
AGATACATATGTGCAACCTGTGCAAGTT-GGCTCACGTTCTAAAAAAAGAACAAGTTGCAACTTGGCTCGT--GTCTATT
ATATATACGCCTCTACCCCCGTCGGCCTCCTCCCCAA-CCCTACCTTCGAAAGATATTCCACCGGC---CAGCACACGGC
AAGAAAAGGACGGCGAGCGCCAGGGAGATCACCGAGACTCGACGCACCATGCCGTGCATCCCGGTGTCCAGCCCCAGCAT
CCAGCACCACAACCACAACCACCACCACCGAGTCCTAGCAGGCGTCGGCGTCGGCATGGGGTGCGGCGCGGAGGCGGTCG
TTGCCGCGGCCGGGACGGCAGGGATGAGATGCAGGGAGCACGACTGCGAGGTCCCGGCGGAGGTGGCGCGGCACCACGAG
CACGCGGAGCCGGGGTCCGGCCAGTGCTGCTCCGCGGTGGTGCAGCACGTGGCGGCGCCCGCGGCGGCGGTGTGGTCCGT
GGTGCGCCGGTTCGACCAGCCGCAGGCGTACAAGCGGTTCGTGCGCAGCTGCGCCCTGGTGGCCGGCGACGGCGGCGTGG
GCA---CGCTCCGCGAGGTGCACGTCGTGTCGGGCCTTCCCGCGGCGTCCAGCCGCGAGCGGCTCGAGATCCTGGACGAC
GAGAGCCACGTGCTCAGCTTCCGCGTCGTCGGTGGCGAGCACCGGCTCAAGAACTACCTCTCCGTCACCACCGTCCACC-
--------CGTCCCCGGCCGCGCCGTCCAGCGCCACCGTCGTCGTGGAGTCGTACGTCGTGGACGTGCCGGCGGGCAACA
CGATCGAGGACACCCGCGTGTTCATCGACACCATCGTCAAGTGCAACCTCCAGTCGCTGGCCAAGACCGCCGAGAAGCTC
GCCGCCGTGTCGTGAGGCCTCCTCCACCTCCCTGGATGCGATCGATCT-TTTTTTCCCGGGCGGGATGGATGTGTGTTTC
TTCGGCGCGTGAGCATTTTTCTCCCCAGTTGCTGGTTCTTTTCGTCACATTTGACCACCTCGTTTCTTCTTCTTCTTTT-
---CTCGTTGTTGTGAGATGCATGCCCCTATCCTCCCTTGTCCAAAGATTCAAGAATGACAAGTATCATTGATAGACTTC
AAATTCACTACATGTTTGAGTTGCTCTCTGTATATATGTGGTATAGATCTGTTCTCGTGTACACGCAAAGTATATTCATC
GACATTGGATATTCATTGATTTCGACCCCTTG----------TGTGCTGTTGAGCATAGC----TAATCAAGAACAATAA
CTACAATGTTATATATGATGGTGGATCGAGCTTGTTAAACTGCACACGCATCGGTAGCTAGCACAAGAAATAATGGTGAA
TTTTCGATCCATGGTATGG-----TATGTGTGTCTCCTAGCTGGTCGTCAGATGACCAATTTATTGCATCACATACATAT
ATATATACTCCCTCAGGAAAGAAATATAAGAATGTTTAGATCTAAACACTCTTATATTTCTTTCCGGAGGGAGTACTTAT
ATAGAAATCTTAATCTAGCCATTACAGTACAATTGCCAACCAATCGACCGATAACTTTGGTCACTTCGATCATATGATCA
T---------------ATGAGCCGGCAGATGCTCCAAATTAATTAAACTA--AGCGGCCGAT-------GCATG--AACC
ATAATCTCTCCTACGACAATGTATAAACGATGATGCAG------------------------------------------
------------AATAGAGCAAATGTTATGAATCCACGAAGAAATCTGTGTGATGACCACTTGCATGACGGCGATTTTGT
CCGCTCTATAGGAGAAGGACGTTTCTGAGACGAAAAATATAGTCCCGGGGTGCTCAGCGGGAAGGTGCAGTTCAGGCCAC
TTGGGGCTCAACTTGCGTGCGATTAAATCAATCACGTCCCTCTCCTCGCGTCTCGATGCTCCCTCGAGTAGCATTTGTT
>chr4A_465
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----------------------------------------------------------------GTAAGCAATGATATTA
CCCCAGCCAGCA-TGGTGAAATAATGGAATTTAGTAATCATTAACCATCGTGTTCGTGTGGGTGTGGATTAGTCCGCTTT
ATTAGCAAGTGTAATAATGGAGAACAGATCAAACAAGCAAGAGGCCGGCTGGTCTCTTCGTGCAAGTTGGCCAATTTGCT
CCAAAATTAAAAGGAAACCAATTAATTGAACAGATCAAAGGACAACCTCCTCCATGCAAGTTGGCCAATTTGCTCCGGAA
TTTAAACCCTTAGAGTACAAATCAATCAATTAACAAAACAAAGAGCAGACGCAAGTATACATTTGGAAAACACAAGTGGG
AGATACATACGTGCAACCTGTGCAAGTT--GCTCACGTTCTAAAAAAAGAACAAGTTGCTTGTGCCTCACTGGGTCTATT
ATATATACGCCTCTACCCCCGTCGGCCTCCTCCCCAACCCCTACCTTCGAAAGATATTCCACCGGCCGGCAGCACACGGC
AAGAAAAGGACGGCGAGCGCCAGGGAGATCACCGAGACTCGACGCACCATGCCGTGCATCCCGGCGTCCAGCCCCAGCAT
CCAGCACCACAACCAC------CACCACAGAGTCCTAGCA------GGCGTCGGCATGGGGTGCGGCGCGGAGGCGGTCG
TGGCCGCGGCCGGGACGGCAGGGATGAGGTGCAGGGAGCACGACTGCGAGGTCCCGGCGGAGGTGGCGCGGCACCACGAG
CACGCGGAGCCGGGGTCCGGCCAGTGCTGCTCCGCGGTGGTGCAGCACGTGGCGGCGCCCGCGGCGGCGGTGTGGTCCGT
GGTGCGCCGGTTCGACCAGCCGCAGGCGTACAAGCGGTTCGTCCGCAGCTGCGCCCTGGTGGCCGGTGACGGCGGCGTGG
GCA---CGCTCCGCGAGGTGCACGTCGTGTCGGGCCTCCCCGCGGCGTCCAGCCGCGAGCGGCTCGAGATCCTGGACGAC
GAGAGCCACGTGCTCAGCTTCCGCGTCGTCGGCGGGGAGCACCGGCTCAAGAACTACCTCTCCGTCACCACCGTGCACC-
--------CATCCCCGGCCGCGCCGTCCAGCGCCACCGTCGTCGTGGAGTCGTACGTCGTGGACGTGCCCGCGGGCAACA
CGACCGAGGACACCCGCGTGTTCATCGACACCATCGTCAAGTGCAACCTCCAGTCGCTGGCCAAGACCGCCGAGAAGGTC
GCCGCCGTGTCGTGAGGCCTCCACCCCCTCCCTGGATGCGATCGATCCTTTTTTTCCCGGGCTGGATGGATGTGTGTTTC
TTCGGCGCGTGAGCATTTTTTCTCCCCACT--TGGTCCTCCTCGTCACATTTGACCATCTTGTTTCCTCTTCTTCTTTTT
TCGCTCGTTGTTGTGAGATGCATGCCCCTCTCCTCCCTTGTCCAAAGATTCAAGAATGACAAGTATCATTGATAGACTTC
AAATTCACTGCATGTTTGAGTTGCTCTCTGTATATATGTGGTATAGATCTGTTCTCGTGTACACGCAAAGTATATTCATC
GACATCGGATGTTCATTCGTTTGTCAAGTTTACTCGATCCCTAGTGTTGTTGAGCATAGC----TAATCAAGAACAATA-
CTACAATGTTATATATCATGGTGGATCGAGCTTGTTAAACTGCACGTGCATCGGTAGCCAGCACAAGAAATAATGATGAA
TTTTCGATCCATGGTATGG-----TATGTGTGTCTCCTAGCTGGTTGTCAGATGACCAATTTATTGCATCACATACATAT
ATA------------------------------------------------------------------------CTTAT
ATAGAAATCTTAATCTAGCCATTACAGTACAGTCGCCAACCAATCGACCGATAACTTTGTTCTCTTTGATCATATGATCT
GCCGCGCAGAGCTGTCATGCGCCGGCAGATGCTCCAAATTAATTAAACTA--AGCGGCCGATGCATGAACCATGATAACC
ATGATCTTTCCTACGACAATGTATAAACCATGATGAAG------------------------------------------
------------AATAGAGCAAATGTTATGAATCCACGAAGAAATCTGTGTGATGACCACTTGCATGACGGCGATTTTGT
CCGCTCTATAGGAGAAGGACGTTTCTGAGACGAAAAATATAGTTCCGGGGTGCTCAGCAGGAAGGTGCAGTTCAGACCAC
TTGGGGCTCAACTTGCGTGCGATTAAATCAATCACGTCCCTTTCCTCGCGTCTCGATGCTCCCTCGAGTAGCATTAGTT
>chr4D_495
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--------------GGCGAAATGATGGAATTTAGTAATCATTAACCATGGTGTATGTGTGGGTGTGGATTAGTCCGCTTT
ATTAGCAAGTGTAATAATGGAGCACAGATCAAACAAGCAAGAGGCCGGCTGGTCTCTTCCTGCAAGTTGGCCAATTTGCT
CCAAAATTAAAAGGAAACCAATTAATTGAACAGATCAAAGGACAACCTCCTCCATGCAAGTTGGCCAATTTGCTCCGGAA
TTTAAACCTTTAGTGTAC-AATCAATCAATTAACAAAACAAAGAGCAGACGCAAGTATGCATTTGGAAAACACAAGTGGG
AGATACATATGTGCAACCTGTGCAAGTTGGGCTCACGTTCTAAAAAAAGAACAAGTTGCTTGTGCCTCACTGGGTCTATT
ATATATACGCCTCTACCCCCGTCGGCCTCCTCCCCAA-CCCTACCTTCGAAAGATATTCCACCGGCCGGCAGCACACGGC
AAGAAAAGGACGGCGAGCGCCAAGGAGATCACCGAGACTCGACGCACCATGCCGTGCATCCCGGCGTCCAGCCCCAGCAT
CCAGCACCACAACCACAACCACCACCACCGAGTCCTAGCGGGCGTTGGCGTCGGCATGGGGTGCGGCGCGGAGGCGGTCG
TGGCCGCGGCCGGGACGGCAGGGATGAGGTGCAGGGAGCACGACTGCGAGGTCCCGGCGGAGGTGGCGCGGCACCACGAG
CACGCGGAGCCGGGGTCCGGCCAGTGCTGCTCCGCGGTGGTGCAGCACGTGGCGGCGCCCGCGGCGGCGGTGTGGTCCGT
GGTGCGCCGGTTCGACCAGCCGCAGGCGTACAAGCGGTTCGTGCGCAGCTGCGCCCTGGTGGCCGGCGACGGCGGCGTGG
GCA---CGCTCCGCGAGGTGCACGTCGTGTCGGGCCTCCCCGCGGCGTCCAGCCGCGAGCGGCTCGAGATCCTGGACGAC
GAGAGCCACGTGCTCAGTTTCCGCGTCGTCGGTGGCGAGCACCGGCTCAAGAACTACCTCTCCGTCACCACCGTCCACC-
--------CGTCCCCAGCCGCGCCGTCCAGCGCCACCGTCGTCGTGGAGTCCTACGTCGTGGACGTGCCGGCGGGCAACA
CGATCGAGGACACCCGCGTGTTCATCGACACCATCGTCAAGTGCAACCTCCAGTCGCTGGCCAAGACCGCCGAGAAGGTC
GCCGCCGTGTCGTGAGGCCTCCTCCACCTCCCTGGATGTGATCAATCC-TTTTTTCCCGGGCGGGATGGATGTGTGTTTC
CTCGGCGCGTGAGCATTTTTTCTCCCCACT--TGGTTCTCTTCGTCACATTTGACCATCTTGTTTCCTCTT---CTTTTT
TCGCTCCTTGTTGTGAGATGCATGCCCCTCTCCT-CCTTGTCCAAAGATTCAAGAATGACAAGTATCATCGATAGACTTC
AAATTCACTGCATGTTTGAGTTGCTCTCTGTATATATGTGGTATAGATCTGTTCTCGTGTACACGCAAAGTATATTCATC
GACATCGGATGTTCATTCATTTGTCAAGTTTACTCGATCCCTTGTGTTGTTGAGCATAGCTAATTAATCAAGAACAATA-
CAGTCT-------TATCGTGGCGGATCGAACTTGTTGTTAAATTGCGCACATACCGTAC--CACATCAAATAATGACGAG
TTTTCGATCCATGGTATGGTACTCTATGTGTGTGTCCTAGCTGGTGGTCAGATGACCAAATTTATTGCTTCAC-------
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ATAGAAATCTTAATCTAGCCATTACAGTACAATCGCCAACCAATCGACCGATAACTTTGGTCACTTCCATTTTATGATCT
GCCGCGCAGAGCTGTCATGCGCCGGCAGATGCTCCAAAATTATAATACTATAAGCAGCCGAT-------CCATGCTAACC
ATGATCTCTCCTTCGACAATGCATAGACATTTTTTGATTTCCAAAACGACGAGGTCGAGAAGAGCAGCGAGCTATATCAT
CGATGATAAGAAAATAGAACGAATGCTATGAATCCACGAAGAAATTTGTGTGATGACCACTTGCATGACGGCGATTTTGT
CCGCTCTATAGGAGAAGGACGTTTGTGAGACGAAAAATATAGTCCCGGGGTGCTCAGCGGGAAGGTGCAGTTGAGGCCAC
TTGGGGCTCAACTTGCGTGCGATTAAATCAATCACGTCCCTCTCCTCGCGTCTCGATGCTCCCTCGAGTAGCATTAGTT
>chr3D_1147
GGCGCACGGCGCAG------------------------------------------------------------------
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------------------------------------------------CGGTGCCGGGCGAGGTGGCGCGGTACCACGAG
CACGCGGCCGGCGCG---GGGCAGTGCTGCTCGGCCGTGGTGCAGGCGATCGCGGCGCCCGTGGAGGCGGTGTGGTCGGT
CGTGCGGCGCTTCGACCGGCCGCAGGCGTACAAGCGCTTCATCAAGAGCTGCCGCCTGGTGGACGGCGACGGCGGCGCGG
TGGGGTCGGTGCGGGAGGTGCGCGTGGTCTCCGGCCTGCCCGGTACCAGCAGCCGCGAGCGGCTCGAGATCCTGGACGAC
GAGCGGCGCGTGCTCAGCTTCCGGATCGTCGGCGGCGAGCACCGCCTCGCCAACTACCGGTCCGTGACCACCGTGAGCGA
GGTGGCGTCGACGGTGGCCGGGGCGCCGCGGGTGACCCTGGTGGTCGAGTCGTACGTGGTGGACGTGCCGCCGGGGAACA
CCAGCGACGAGACGCGCATGTTCGTGGACACCATCGTGCGGTGCAACCTCCAGTCGCT----------------------
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>chr2D_1148
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-----------------------------------GAGCACGACGGGACGGTGCCGCCGGAGGTGGCGCGGCACCACGAG
CACGCGGCGCCGGGGGGGCGCTGCTGCTGCTCGGCGGTGGTGCAGCGCGTGGCGGCGCCGGCGGCGGACGTGTGGGCCGT
GGTCCGGCGCTTCGACCAGCCGCAGGCGTACAAGAGCTTCGTGCGCAGCTGCGCGCTGCTGGACGGCGACGGCGGCGTGG
GCA---CGCTGCGCGAGGTGCGCGTGGTGTCGGGCCTCCCCGCGGCGTCCAGCCGGGAGCGGCTGGAGATCCTGGACGAC
GAGCGGCACGTGCTGAGCTTCAGCGTGGTGGGCGGCGAGCACCGGCTCCGCAACTACCGGTCGGTGACCACGGTGCACC-
--------CGGCGCCGGGGGAGAGCGCGTCGGCGACGCTGGTGGTGGAGTCGTACGTGGTGGACGTGCCCCCCGGGAACA
CGCCCGAGGACACCCGCGTCTTCGTGGACACCATCGTCAAGTGCAACCTCCAGTCCCTCGCCCGCACCGCCGAGAAGCTC
GCCGGCCG------------------------------------------------------------------------
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>chr2B_1148
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-----------------------------------GAGCACGACGGGACGGTGCCGCCGGAGGTGGCGCGGCACCACGAG
CACGCGGCGCCGGGGGGCCGCTGCTGCTGCTCGGCGGTGGTGCAGCGCGTGGCGGCGCCCGCGGCGGACGTGTGGGCCGT
GGTCCGGCGCTTCGACCAGCCGCAGGCGTACAAGAGCTTCGTGCGCAGCTGCGCGCTGCTGGACGGCGACGGCGGCGTGG
GCA---CGCTGCGGGAGGTGCGCGTGGTGTCGGGCCTCCCCGCGGCGTCCAGCCGGGAGCGGCTGGAGATCCTGGACGAC
GAGCGGCACGTGCTGAGCTTCAGCGTGGTGGGCGGCGAGCACCGGCTCCGCAACTACCGGTCGGTGACCACGGTGCACC-
--------CGGCGCCGGGGGGGAGCGCGTCGGCCACGCTGGTGGTGGAGTCGTACGTGGTGGACGTGCCCCCCGGGAACA
CCCCCGAGGACACCCGCGTGTTCGTGGACACCATCGTCAAGTGCAACCTCCAGTCCCTCGCCCGCACCGCCGAGAAGCTC
GCCGGCCG------------------------------------------------------------------------
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>chr2A_1148
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-----------------------------------GAGCACGACGGGACGGTGCCGCCGGAGGTGGCGCGGCACCACGAG
CACGCGGCGCCGGGGGGCCGGTGCTGCTGCTCGGCGGTGGTGCAGCGCGTGGCGGCGCCCGCCGCCGACGTGTGGGCCGT
GGTCCGTCGCTTCGACCAGCCGCAGGCGTACAAGAGCTTCGTGCGCAGCTGCGCGCTGCTGGACGGGGACGGCGGCGTGG
GCA---CGCTGCGGGAGGTGCGCGTGGTGTCGGGCCTCCCCGCGGCGTCGAGCCGGGAGCGGCTGGAGATCCTGGACGAC
GAGCGGCACGTGCTGAGCTTCAGCGTGGTGGGCGGCGAGCACCGGCTCCGCAACTACCGGTCGGTGACGACGGTGCACC-
--------CGGCGCCCGGGGAGAGCGCGTCGGCGACGCTGGTGGTGGAGTCGTACGTGGTGGACGTGCCCCCCGGGAACA
CGCCCGAGGACACCCGCGTCTTCGTGGACACCATCGTCAAGTGCAACCTCCAGTCCCTCGCCCGCACCGCCGAGAAGCTC
GCCGGCCG------------------------------------------------------------------------
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>SNPs
--SSSSSS--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
------SSSSSSS-------------------------------------------------------------------
-----------------------S----------------------------------S---------------------
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-----------------------------------------------------------SSS-SSSSSSS----------
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----------------------------------------------------------------S---------------
---------------------------------------------S----------------------------------
-S--------------------------S---------------------------------------------------
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-------------------------------------S------------------------------------------
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-----------------------------------------------S--------------------------------
--------------------SSS---SSS-SS-------S-----------------S--S-----S-------------
-----------------------------S--------------------------------------------------
---------S----------------------------------------------------------------------
-----S----S------S----SSSSSSS--S--------------S--------------------------------S
----------------S----------------------------SS-----------S----------------S----
---------------------------------------------S----------------------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
---------------------------------S---------------------------------------------S
S------------------S-------------------------------------------------S----------
--S-------------------------S------S--------------------------------------------
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---------------------------------------------------------------------------S---
>forward_448
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----------------------------GAGGCAGGGGTTTAACCTCC--------------------------------
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>reverse_2024
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-----------------------GACCCCTTGTGTGCTGTTGA-------------------------------------
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