>input_sequence_72092
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----------------------------------------------GTTTATAATCCCGGCGCGAGATCGAGATCGAGAG
AGGCGCCGA-GGGTGCATCGTGCATGGTTTAATTTGTGGCGCGACTGCGGGAGCCGGAGAGCGA----GCGTGTTAAATA
TGGGCATCCTGGATCACTC---GGAGGAGGAGGAGGAGGAGGGGAGCCACTGCGGC---------GGAGGCGCGAGGTTT
GGGGCGCGGCGGCAGAAGCCGAGGTCCAAGAGCCACCACCAGCTGCTGCTCATGGACAGCGTCGGCGGGGGCAAGGCCGG
CGCGGACGGGGAGTGCGCGTCGGAGGAGGAGGAGATCGTGCCGCTGCCGGAGTACGAGCGGCTGTCCCAATCCGCGCGCC
TCCCGG------ACGACGACCGGGCTGGCGCCGAGGACCCGCCTCCCCCGGCCGAGCGGGGCGCGTCCCTGACGCCCCCG
CCGCGG------CAGCAGCAGAAGCCGGCGGCGTGGAGGCTGCTCCAGTACGTGCGGTCCATGCACAGGTCGTCGGCGGG
GGTCGTGGTCGCCGGCGCGTACTGCGGCGGCTCGTCGGACGGCGACTCCAAGAGCTCCGACGGCGAGAAGGAGGGGG---
------------------------TCGACGGCGATGGAGATGAGGAGGGGAGGAAGGAGAAGG------AGCAGCGGAAG
AAGAAGCGCTCCTCGTGGCTGCCGGACCCCGACCGCCGGTGGCCGGTGCAGGGGTTCTACTAG-----------------
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>chr4A_1_TraesCS4A01G260000
AGCTTCCTGTTGACGAACCTGATGGCACGCATCCACCGACCTCCTCCACGACAACCAGCCTCCCTCTTTCGAGAGCTGCT
TACAGGTAGTTGGCCATGCTCCATGACCTCTCGCTAGCCCTCGCTGACGGGGGCACACCTTCCTCCATCGCATCCGCCTC
CCT-CCCTCCATTCCTCCGCTACGCAACGCCATGGGCCACGTACCATCCCAAAAAGAATCACGTCC--------------
-TACAAATCAAGTGGGCGACCCCACCAATCCAGTCAGCAACCGACGCCCGCGCAGTTAAGGCTGGTCATAGTGGGAGTAA
CATAGGTAGTAACATAGATGCCACATAAGCAAAATTGGTGATGTGGCAAGTAGTTAATGAGGAGAGAGGCAAATAGAGTA
ACATAATATGTTACCATCACATAGCGGTTTCCAATGCATAATGAGTCTACAAAGTAATAAATGAAGGCAACTATGTTACC
ACACCTATGACACTACCCACTATGAAGGTAGTAATATAGACTAGTAACATATGTATGTTACTAGTCTAAGTTACTCTCCA
CTATGACCAGCCTAAGAAGGTGGAATGAGGGCGCAAGCGATGCTAAGATTCGTGGACAATCGGACGGCAAAAAGAAAACA
GCCCGGAG----GCCAAATGAAAACCAGATGGCCGGAAATTACGGAAACTGCTCCCCATACTCCTCCTCTGTGGAAGATC
GCTCCAAAAAAAAAAGAT--------------------------------------------------------------
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-------------------------------------------GAGCCGCCAAATATCCGCGTCATGCTGCGTCGGACGC
AATA-CCGT-----GCGCCGCG------CCTCATCCTCGAGCGAGGCGAGCGCGCGCGTGGCCCTCGACGACGTGACCCG
AGCCCCCATAGTCAAAGCCAATAATTCCATTCCCAATTCCCTACTCGCCATCGCCATTGGCGGGCTGGAGCAACCCTTGT
CAAACTTCTCCACCCCACATCGCAAATTAAATTCCCTCTCGCCTGTCGCCCGCTAGCTCTGCCTCATCCT----------
---CCCATACG----------------CCGTCTCGCCCGGCGCAAAGTTTATAATCCCGGCGCGAGATCGAGATCGAGAG
AGGCGCCGA-GGGTGCATCGTGCATGGTTTAATTTGTGGCGCGACTGCGGGAGCCGGAGAGCGA----GCGTGTTAAATA
TGGGCATCCTGGATCACTC---GGAGGAGGAGGAGGAGGAGGGGAGCCACTGCGGC---------GGAGGCGCGAGGTTT
GGGGCGCGGCGGCAGAAGCCGAGGTCCAAGAGCCACCACCAGCTGCTGCTCATGGACAGCGTCGGCGGGGGCAAGGCCGG
CGCGGACGGGGAGTGCGCGTCGGAGGAGGAGGAGATCGTGCCGCTGCCGGAGTACGAGCGGCTGTCCCAATCCGCGCGCC
TCCCGG------ACGACGACCGGGCTGGCGCCGAGGACCCGCCTCCCCCGGCCGAGCGGGGCGCGTCCCTGACGCCCCCG
CCGCGG------CAGCAGCAGAAGCCGGCGGCGTGGAGGCTGCTCCAGTACGTGCGGTCCATGCACAGGTCGTCGGCGGG
GGTCGTGGTCGCCGGCGCGTACTGCGGCGGCTCGTCGGACGGCGACTCCAAGAGCTCCGACGGCGAGAAGGAGGGGG---
------------------------TCGACGGCGATGGAGATGAGGAGGGGAGGAAGGAGAAGG------AGCAGCGGAAG
AAGAAGCGCTCCTCGTGGCTGCCGGACCCCGACCGCCGGTGGCCGGTGCAGGGGTTCTACTAGGGTGCAGGTCTTCGCCG
TGTGTCGTGGACTTGTCGTCGCGTTTAATTCTCTTCGTTGATTCGACTACTACGTGCTGTGTC-----------------
-TGACGTGTCACCTACTCTGTGTCTTCGCTGATCTTGTTCAGGTTTGTTTCCTTTCCCTTTCCTCGTGGTTTCGATGTCG
TTGACGATGAGCAGCAAAATGATGGCTACTCCTCTATCTACATTGGCTTTCCTTCTGAGTTGTGACCCTTGAGTTTTCCG
GTCGATCGAAGCTGGGTGTGCATGCGTGTGTTCATATTTTCTTGTCAAGGTTGAGAAGAAGATGCAAAGATCGTGCGAAA
GATTTCGCACGCCAAAATCCGCGGTCAATAGCTCTTGGAGACAAACTCCGAATTCAAGCCGATCTTGTTTCGCGATAATC
TTAAAGTGTGAGTGTGATTTAG---TAGCAACAATGCACAGTGGAAACACACCATACAATTGAGGCAATGAGTTGACACA
CGTGATGCAAATTGAAAGCACGTCATCAACCACATTGTTGTCAATTACACCATGTTCTTTTGTGAGCAGTTACTATAACA
CGTTCCGCCAAATTTCATCAAGCCTTCC----------------------------------------------------
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------------------------------CCGCAAAAAAAAAATCATCAAGCCTAGAAGAGACTATCAAAGGGAAATGC
CCTATGCCTCTGGAGTTTTCGGTGAAACCTCATACGCCGCATGTCGATGATCCCCCAAGCATACCATGGCCATGCCCACC
TTCGGGGCGGGCTGCACTTTCGGTCGATAGCTCCTTCGGCTCAAATGATGGTAATGCTGGGACAAGGACGATTTTAAGAG
ATGACAAGGATACGATGATC----------------------------TTCGCTGCTTACAGAGGGCTGTTTCATTGCAA
TGA-----------------------------------------------------------------------------
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----GTCGCTTGCCCGGCCGTCCTCTTCTCCAGCGTGACAATGCTCCGCGACGAGGAGCCGCCACCACCACAGCCATCAA
GGTAGTGTAGGAGGCGCCCGCGTGTCTTCGAGAACGCCGGCGGCACCTCCTCTTTCACGGTCTTGCCGTGCCAGT
>chr4B_56
-------------------------------------------------------CAGCATCCCTCTCTCAGAGCTTCTC
GTGGGCAGC-TGGCCATGCTCCATGACCTCTCGCTAGCCCTCGCTGACATGAG--CACCTTCCTCCATCACATCCCTCTA
CCTCCCCTCCATTCTTCCGCTACGCAACAACATGGACCACAGACCACCCTGAAAAGAATCACGTGGTGGAATGGGTCGAC
GTACAGATCATGTAGGCCACCCCACCAACCCAATCAGCAACTCACATGAACACAGG------------------------
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------------TAAGAAAGTGGAATGAGGACGCAAGTGATGCTAAGATTCGTGGACGATCGGACAGCTAAAAAAACAGC
CTGAAGGCTAACGCCAAATGGAAAACAGACGGCCGGTTCCACT--------------ATACGCCTCCTCCGTAGAAGATC
GTTCGAGAAAAGGTTAAAAGCAACAATCGATGTTTAGAAAAAGGGTGTATCTAGAACTCAGTCAATTGAGACTGAACGAA
GTCTCGGTCAAGTGACGTCAGCGTGGTTTCTTTGCTACAAGCGGCATGATTGGATGCTACAAGCGGCGACAAAAAAATGT
TGCGAAGGTATTGCAAGCAACAATAAAAATGTTGCAACTGTTCTAACTGAAATGCTACAACCGTCACTGAAGGATGTTGC
AACCAGTGAGATGACGTGCTACAACCAATGAAGGACGTGCTACAACCAATGAAGGACAAAATGCTACAACCAGCAAGACA
GATGTTGCAACCGATAGAAAGAAAATGTTGCAAACGATTGCATAAAATACTGCATGGTCGACTGAGACTCGTTAGATCTC
AGTCAACCGATTTTTAGTAGACCGGTTAAAGAAACAGAAATGTTAACGCCCACACGTGTGGGCGTTAGCCAACTTGCCCA
CACGCCTCCATCACCATCCAACGTCTTTTGCACGAATCTTGGCATAAAAAGGCTGATTTTGTGTGCCACGTAGGACAACT
TGTGTGTGTGGCATGTGGGGGAGTTCGCTCACACGCCTGTTTTCTCTCCGCGGCCAACGTTCGTCAGTCGGGACGTGCGA
TGGAACTGTTGTCGCGCCCGCACGCCACGCACCACTCCTGTTCCCCATCTCCCACGACTGCCATTCTCCCACCCTCCCAC
ACCCAAGCTGTCATTTGCCATGTTTTTGAAGGATACATGGCAACTGCCTTATTTGTGATTGTAAGCATATGGCAACTCTC
TTTTTACCCGAACATGTTATTGTTGCCATGTCTGTTTTGTAGCGTTACATGGCAACTGTCTAGTGTTAGTAGGTGGCAAC
TCCTAAAGATACCACCGTCACCCACATGCCTGTCTCCTCTCCCACACACCAAAAGCCATCAGTTGCCATGTGTTTTGCAG
GATACATGGCAACTCTTTTTTTACCCGCAACATGTTTTTGCCATGTTTTTTAGTGCTACATGGCAACTGTCCAGTGTTAG
TATGTGGCAACTCTTAAAGTTTTCCAAATCATGATAACTGTAGTTGTCCAACATGGCAACAGCTGTAGTTGCCCAAAAAT
GGCATCCGGCACTTGACCTAAGATGGCAACTGCAATTGAGCAACCATGGCAACTGTAGTTGTCCGATATGACAACTGTAC
TTCAGCAACATGGCAACTACAGTTCAGCAACATGGCAACTGAAGAGGGTCCGGACCATGGCAATCGCGGCGGGAGCGTGG
TTACTGACACGCGGGGCGTGTGGCTCGCAGGCGGGGAGGGGCGACGGCCGAGACGGGTCGTGCGGGCCGCGTGCTCGCTC
GCCCGAACGTGCTCGTGCGGGGCGATCGCGCTGCACCGGACGTGCGGGCTGTGGCTGCGCGCGCCCGGACGCGGTCGTGT
GGGCGGGGTCGTCTCCGTGCCACACAGGACGTGCGGCACAATCACCCGATACTCCACACGTGTGACAAGTATCGGGACCC
TAAAGAAATTGAGCGAAGAATGAAAGATGCGCCTCCGGTGGGAGAGCCGCCAAATATCCGCGTCATGC---GTCGGACGC
AATAACCGT-----GCGCCGCGGCGGGACCTCATCCTCGAGCGAGGCAAGCGC----GTGGCCCTCGACGACGTGACCCG
ACCCCCCATAGTCAAAGGCAATAATTCCATTCCCAATTCCCTACTCGCCATCGCCATTGGCGGCCTCGAGCAACTCTTGT
CAAACTTCTCCACCCCGCATTGA-----AAACTCCCTATCGCCTGTCGCCCGCTAGCTCTGCTTCATCCCATGTCGAGGC
TTGCCCATAGG----------------CCTTCTCGCTCGGCGCAAAGTTTATAATCCCGGCGCGAGATCGAGATAGAGGG
AGAGAGGGAGGGGTGCATCGTGCATGGTTTAATTTGTGGCGCGACTGCGG------GAGCGCGA----GCGCGTTAAATA
TGGGCATCCTGGATCACTCGGAGGAGGAGGAGGAGGAGGAGGGGAGCCACTACGGCA------GCGGAGGCAAGAGGTGT
GGCGCGCGGCGGCAGAAGCCGAGGTCGAAGAGCCACCACCAGCTGCTGCTCATGGACAGCGTCGGCGGCGGTAAGGCCGG
CGCGGACGGGGAGTGCGCGTCGGAGGAGGAGGAGATCGTGCCGCTGCCGGATTACGAGCGGCTGTCCCAGTCCGCGCGCC
TCCCGG------ACGACGACCCAGCCGGCGCCGAGGACCCGCCTCCTCCGTCCAAGCGGAGCGCGTCCCTGACGCCCCCG
CCGCGGGAGCAGCAGCAGCAGAAGCCGGCGGCGTGGAGGCTGCTCCAGTACGTGCGGTCGATGCACAGGTCTTCGGCAGG
GGCCGTGGTCGCCGGCGGGTACTGCGGCGGCTCGTCGGACGGCGACTCCAAGAGCTCCGACGGCGAGAAGGAGGGGGGA-
--------------------GACGTCGGCGGCGACGGCCCTGAGGAGGGGAGGAAGGACAAGCAGCGGCAGCAGCAGAAG
AAGAAGCGGTCGTCGTGGCTGCCGGACCCCGACCGCCGGTGGCCGGTGCAGGGGTTCTACTAGGG-----GTCTTCGCCG
TGTGTCGTGGACTTGTCGTCGCGTTTAATTCTCTTTGTTGATCGTACTGTGTT--TACGTGTACGTCGAAGCTGGTACCC
ATGACGTGTCACCTACTCTGGGCCTTCGCCGATCTTGTTCGGGTTTGTTTCCTTTCCCTTTCCTTGTGGTTTCGATGTCG
ATGACGAGGAGCAGGAAAAAGACTACTACGACCACTGGAGAATTGGCTTTCCTTCTGAGTTGTGACACTTG---------
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-----------------------------------------------------------------TGTTTCGCAATAATA
TTGCAGTATGAGTGTGACTTAGTACTAGCAACAACACACAGTGGGAACACACCATACAATTGAGACAATGAGTTGAAACA
CGTGATGCAGATTGAAAGCACGCCGTCAACCACATTGTTATCAATCGCATCATGTTCTTTTCTGAGCA------------
-------CCAAATTTCAAGGGCTCTCTTTGGCACTAGAACGATCCTGTTAACTTTACCTATATACAGCTTCAGTCCGATT
GCACGATTGCGCTCAAGGCGTTCACGGATAATTCCCTGGATAGGTAGGTATATGGACATCTGATTTCGGAGATCAAACGC
TCCATGGATACTAGGGTAGTTGTTCCGGTAAAAATTTATCCCTCTCAAAATAGGGTTACACATTGTTTACAACATTCGGT
CGGAATGTGGACAACACTGCGTGTTGGTTAAACCACCCCCCTCCGTGCATCAGTGAGCTAGTCGCTGAAGATTGTAATTC
TATTACCTTGGAATAAATACCCTATGACTTCCGCAAAGAAAAACTGCATCTCGGCAATTGCACCCTTACCCTTGTCAATT
CCAATATTGCATCATGTAGAATGATGAAGTTGCGGAGTTCATGTTTGTTCGTAGAAACAATGCAACTGAAACTGGAACCA
TTTATTCAAACCTTACAAGATAAACAAGCACTCGTTGGCAAAACATATAAAAAAACATCTCCAAAACCGTGTAAGGGCAT
CTTGAATGATATCCTCTAAAATGGACATGGTATTTATCCATGAACGCGTTCGCAGATTAATAAGGGGGGTGACCATCCAA
CGATAGCCATAAACATCTAACCATACTGAAAACACATTCAGACGGAATTCTTGCAAACATGACATAATTAATTTAAGTTC
TGACATAATTTACATAAAGCGGACAATAGTTGGTCCATTCAGCGGCAGAAGGACGTGGGGGCGCGGCAGCCCTGCCCGGC
CAGCATCTCGTGCTCATGGAGGAGCCGCTCCACTTCCTCCTATGTCGTGTGGAGGAACGTCTCGGGCAACGATGACCCTG
GCTGGGGTGCCCTAGCCTTGCCCCTGCCGGCAACGATGAAGGTGTCGTTAACCGACCACTCCTTATCGATCTTGGTGAGC
TCCCCATCGAGGTGGCGCAACGGACGACAAACATATCCGTGTTGGTCATCGACCGGTCGCGAGCCCAGACCTCCGCAAGG
TCAGGGTCCATGAGGAGCCATGCCAGCGCCGCGACAGATTTGTCGAACGGCAAGCGGCGCGTCGCGTTGCGCCACTCCCA
CCTTGTCGCATGCCCGGCCATCCTCTTCTCCGGTGTTACAGTGCTCCGCGAGGAGGAGCAGCCACCGCCGCAGCCATCAA
GGTAGTGAAGGAGGCGCCCGCGTGTCTTCAGGAACGCCGGCGGCACCTCCTCTTTCACGGTCTTGGTGTGCCAGT
>chr4D_719
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-------------------------------------------GAGCCGCCAACTATCCGCGTCATGC---GTCGGACGC
GATAACCGTGCGCCGCGCCGCGGCGGGGTCTCATCCTCGAGCGAGGCGAGCGCGTGGGTGGCCCTCGACGACGTGACCCG
ACCCCCCAGAGTCAAAGCCAATAATTCCATTCCCAATTCCCTACTCGCCATCGCCATTGGCGGGCTCGGCCAACTCTTGT
CAAACTTCTCCACCCCGCATTGA-----AAACTCCCTATCGCCTGTCGCCCGCTAGCTCTGCTTCATCCT----------
---CCCATATCGAAACCTGCCCATAGCCCGTCTCGCTCTCCGCAAAGTTTATAATCCCGGCGCCGGATCGAGAGAGAGAT
AGAGA--GA-GGGTGCACCGTGCATGGTTTAATCTGTGGCGCGACTGCGG------GAGCGCGGGCGCGCGCGTTAAATA
TGGGCATCCTGGATCACTCGGAGGAC---GAGGAGGAGGAGGGGAGCCACTACGGCGGCAGCGGCGGAGGCGCGAGGTTC
GGCGCGCGGCGGCAGAAGCCGAGGTCCAAGAGCCACCACCAGCTGCTGCTCATGGACAGCGTCGGCGG---------CGG
CGCGGACGGGGAGTGCGCGTCGGAGGAGGAGGAGGTCGTGCCGCTGCCGGAGTACGAGCGGCTGTCCCAGTCCGCGCGCC
TCCCGGGCGACGACGACGACCCGGCTGGCGCCGAGGCCCCGCCTCCTCCGGCCGAGCGGAGCGCGTCCCTGACGCCCCCG
CCGCGGCAGCAGCAGCAGCAGAAGCCGGCGGCGTGGCGGCTGCTCCAGTACGTGCGGTCCATGCACAGGTCTTCGGCGGG
GGCCGTGGTGGCCGGCGGGTACTGCGGCGGCTCGTCGGACGGCGACTCCAAGAGCTCCGACGGAGACAAGGAGGGGATCG
ACGGCGATAAGGAAAGGGTCGACGGCGACGGCGACGGCGACGGCGAGGGGAGGAAGGACA---------AGCAGCGGAAG
AAGAAGCGCTCCTCGTGGCTGCCGGACCCCGACCGCCGGTGGCCGGTGCAGGGGTTCTACTAGGG-----GTCTTCGCCG
TGTGTCGTGGACTTGTCGTCGCGTTTAATTCTCTTCGTTGATCGTACTGTGTCTGTACGTGTACGTCGAAGCTGGTACCC
ATGACGTGTCACCTACTCTGGGTCTTCGCTGATCTTGTTCGAGTTTGTTTCCTTTCCCTTTCCTGGTGATTTCGATGTCG
ATGATGAGCAGAAAAAAGA-------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------S--SSSSSS-SSS
SSSS-SSSSS--------------------------------------SS-S-SS--------------S-----SS--S
--------------S-------------SS-----S----SS----S--SS-------------SS--------------
-----S----S--S---S----------S---S--------SS--SSSSS-S---SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS------S-----------S------S-------------------S-------S--S----S--S-SS
SSSSS-SS------------S---S----S------SSSSSSSSSSSSSSSSSSSSS----S-------S--S-------
-S--S-S----SSSSS-S--------------------------------------------------------------
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--------------------------------------------------------------------SSS---------
------------------------------------------------------S-S-----------------------
-S----------------------------------------------------------------S-------S-----
----------------S---S-SSSSSS---S-----S------------------------S-----------------
---------S--------------------------S-------------------------------------S-----
--SSSSS-------------------------------------------SSSSSS---S-----------S--------
---------------------------------------------------S----------------------------
--S-----------------------------------------------------------------S--S--------
---------------------------------------------------------------------S----------
---------------------S------------------------S------------S--------------------
-----------------------------------------------------------------------S--------
--S--------------S--------------------------------------------------------------
----------------------------------S--S--------------------S---S-----------------
-----------------------------------------------------------------SSSSS----------
------------------------------------------SSS---SSSS-SSSSS----S-----------------
--------------------S-------------------S-----------------------S---------------
S------S------S----S--SSS----SS-SSSSSSSSS-------------------------S----SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-----S
--SS---S---------S----------------SS--------S-------------------S-----------S---
---------S------------S-S--------------S-----SS--S-----------S------SSSSSSSSSSSS
SSSSSSS----------SSSSSS--SSS----------------------------------------------------
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-------------------------------------S-----S-SSSSSSSSSS-SSS-SSS-SS-SSSSSS-SS-SSS
--S--SSSS-SSS-SS-SSSSSSSSS-SS-SSSSSSSSS-----SSS-SSSSSSSS-SSSSSSSSS--SSSS--SSSS-S
--SSSSSSSSS--SSSSSSSSSSS-S-SSS---S--S-SSSS-S--SSSSSS--SSS-SSSSS--SSSSSS-SSSSSS-S
S-SSS-S-SSSS-SSSS-SS---------------------------------S-S---SSS----SS--SS-SS-S---
S-------------------------------------------------------------------------------
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---------S---------S-----------S-S--S---S----------S-------S------S--S----------
-------S---------------------SS----------------------------------SS--------
>forward_318
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----------------------------------------------------------AGGCTGGTCATAGTGGGAGT--
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>reverse_3616
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---------------GTGTGCATGCGTGTGTTCAT---------------------------------------------
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