>input_sequence_72080
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------ATGGGTTTGGCCATGGGCAAGC
TGATGCTGGGGAAGATCATCGTGGAGACGCCGAAGCACGAGGTGCTCCACACCGGCGACGGCTACGAGATCCGCAAGTAC
CCGCCGTGCGTCGCCGCCGAGGTGACCTACGACCCCAAGGAGATGAAGGGCGACCGCGACGGCGGGTTCCAGGTCCTCGC
CAACTACATCGGCGCCTTCGGCAAGCCGCAGAACACCAAGCCGGAGGCGATCGCCATGACGGCGCCGGTCATCACCTCCT
CCGGCGG---CGGCGAGGCCGAGCCGATCGCCATGACGGCGCCGGTGATCACCTCCTCCGAGCCCGAGCCGGTGGCCATG
ACGGTGCCGGTGATCACGGCCGAGGGCCGGGAGGAGAAGGCGAGCAAGGTGACGATGCAGTTCCTGCTGCCGTCCAAGTA
CACCAAGGCGGAGGAGGCGCCGCGGCCGACGGACGAGCGGGTGGTGCTGCGGGAGGTGGGGGAGCGCAAGTACGCGGTGG
TGACGTTCGGCGGTCTGGCCGGAGACAAGGTGGTGGCCGAGAAGGCGGAGGGGCTCAAGGCCGCGCTGGAGAAGGACGGG
CACGCCGTCACGGGCCCCTTCGTGCTCTCCCGCTACAACCCGCCGTGGACGCTCCCGCCGCTGCGCACCAACGAGGTCAT
GTTCCCCGTCAAGTGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G397400
TGATCCGTATGTGGTCGCTACTCACTCCGACGGATGCTAGGGAGCATATGGTTACTGGGTCTATCCGTTGGGAGACGGTA
GCACGAGTTATCTTCAATAGGTGTTTAGTTTGCTATCTTTCTTTATTCCGCCGGTTGTGGCTATCCCGTTTTCTTGCTTT
TAGCTCTTTATGAGCCTTTTTGTATTTCGAGACCTGAAGACTGTTTTGCACTATTTGCTTTTTAGTAAAATGGCCGCATG
CATCTTTTTGATGCAAAAGCCGAGGATAACCTCCTTTTCAAAAAAAAAAAAAATGCCTCCCCACTTTGGCCGATGCATCT
TCCGCTTGTGCTCATCTCCTCCCCACCAAAACCGTGCCACAATGTTTGTAATCTCATCTTGCACTTCCATATTGACAACT
TGAAACAATTCATATTAAGTTGGGATAGCTTAACAGATGGGTTTAATCAGGAGTTCCCATCGCTGTTTAACTTTCTGTAC
ATAACTGGTGCTGTCATTTTGTGATGTGGTTTGTACTTTCACCGTTGGATTTGAACTTTAGAGGCTCGATATTTGGCGCG
CGGTCCACTAATCGCACCGGTGTTCTGGCTGGTATGAAGAGGTGTATATGCCGTTTGCTCCATTTTCTTGCAAGTCGACG
TTCAGCT-----CTCTTCGTCGGAACATGGCGTGCAAGTCAAAGCCGGCAAGCGGAACTTTCTCTCCAAGCCAAAAA---
AAGGAAGA---AATCAAGAAAGGAGAGAAAGAACGTGCGTACAAGACGAAAAATGCTCAAGCAATGTGCCGAAATCGGAA
ACGCCTCCGTGGAGCAACCCACGCCGCAGCTAACACACCATACCTCGTCCACTCATCCGAATCTCTCGCTTGTTCTTAAG
CCCCAGCGCCGCCGAGCCAGATCAACATTCACCCAACGAGCCCATCCCAGCTAGCTCAAAGACCTCCGTTGAGCCCTCCA
TCGAACAAGCCTCGCCGCCC-------CTGTTGCCATTCGCCGCGACTGACGCCGACCATGGGTTTGGCCATGGGCAAGC
TGATGCTGGGGAAGATCATCGTGGAGACGCCGAAGCACGAGGTGCTCCACACCGGCGACGGCTACGAGATCCGCAAGTAC
CCGCCGTGCGTCGCCGCCGAGGTGACCTACGACCCCAAGGAGATGAAGGGCGACCGCGACGGCGGGTTCCAGGTCCTCGC
CAACTACATCGGCGCCTTCGGCAAGCCGCAGAACACCAAGCCGGAGGCGATCGCCATGACGGCGCCGGTCATCACCTCCT
CCGGCGG---CGGCGAGGCCGAGCCGATCGCCATGACGGCGCCGGTGATCACCTCCTCCGAGCCCGAGCCGGTGGCCATG
ACGGTGCCGGTGATCACGGCCGAGGGCCGGGAGGAGAAGGCGAGCAAGGTGACGATGCAGTTCCTGCTGCCGTCCAAGTA
CACCAAGGCGGAGGAGGCGCCGCGGCCGACGGACGAGCGGGTGGTGCTGCGGGAGGTGGGGGAGCGCAAGTACGCGGTGG
TGACGTTCGGCGGTCTGGCCGGAGACAAGGTGGTGGCCGAGAAGGCGGAGGGGCTCAAGGCCGCGCTGGAGAAGGACGGG
CACGCCGTCACGGGCCCCTTCGTGCTCTCCCGCTACAACCCGCCGTGGACGCTCCCGCCGCTGCGCACCAACGAGGTCAT
GTTCCCCGTCAAGTGATGATCAGGCCA------------CCTCATGTATGCAGCTACCGTGTGCTAGTATTCCATTAGCT
T-GTAGTATTTCCGTTTCGTTTAAGCTGGCACGTCACGTGTTTGGTTA----GCACAATAAATAATTGAGTTGTCTGCTG
AACGGAGAGTCGCGTTTTCGCACACGGGAGTGCGTGCTCCTGGTTTTCAAAATGTCTTTTAAACGTATTTTGAAATGTTA
AAAAATTCCAAACAAAAATTGGCGGATACGTTTTGATATTGTACATGCTCACAAAGTTGTCTCGTGAAAAACCGACAAGT
TATGTGTCGTGTTTGAAAAAAATAAAATCTAATGTTAAAAAATGCTTTTGACAAGACAACTTTTTGTCTTTTTACAGAAG
TCACAGAAATACCGGGTTTCTCTAAAACTTGACGTGTATACATATAATATGAAGATGTATTCGTTAAATTTCTGTATGGA
ATTTCTTCATATTTTTTCCGATGACAGAAGCGCACACTCTCATGTGCCGAAGCGAATTTCTCAGCTGAATGTTGATAGCT
TCAGTTGATACGCCCTGATCTTGACGTGCCCCACCCTGGACGAACTGACGAAGACATATATTTATCACTGCAAAACAGCA
ACACTTCAGACATTCACAACTCGTTAACTAAATTGGAATCAGAAACTCTCAAACTCAACGTGTCCGTGCTACTTCCTCAA
ACAGTGGATTGGCGTAGCAGAGTTCCGCCGCCTCGCACAAGAAGAAAACAGAGTACTCTGCTATGCTCAATAGACTGCTC
ATTTTTATTCTTCTGCCAGATCCAAAAAAGGAGAGCAAGCTATATGACTTTGATGGGAGTGTAAACATAGTACATCCATT
GAAGAAGCTGAAACAATCACGAACAATAAAAAGATTCCATCGACGTCGAAGTTCTTCGTCTCTGGCTCTACTTACCAAAA
AAGGCTTTCGCCCCGCTTTATATATAAAGCACAATCCACAACAGCACGGTACAAATGCACGTCACCAAAACAC
>chr3A_531
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TTAAACTTTAGAGGCTGAATATTCGGCG--
--GTCCACTAATTGCACCGGTGTTCTGGCTGGTATGAAGAGGTGTATTTGCCGTTTGCTCCAATTTCTTGCAAGTCGACG
TTCAGCCCTCCCCTCTTCGTCGGAACATGGCGTGCAAGTCAAAGCCGGCCAGCGGAACTTTCTCTCTAAGCCAAAAACGG
AAGGAAGAAGAAAG----------GAGAAGGAACGTGCGTACAAGACGAAAATTCCTCAAACAATGTGCCGAAATCGAAA
ACGCCTCCGTGGAGCAACGCGCGCCGCAGCTCACGCACCATACCTCGTCCACTCGTCCGAATCTCTCGCTGGTTCTTAAG
CCCCAGCGCCGCCGAGCCAAATCAACATTCACCCAACGAAGCTCAG-------------AGACCTCTGTTGAGCGCTCCA
TCGAACAAGCCTCGCCGCCCCTGTTGGCTGTTGCCATTCGCCGCGACCGGCGCCGGCCATGGGTCTGGCGATGGGCAAGC
TGATGCTGGGGAAGATCATCGTGGAGACGCCCAAGCACGAGGTGCTCCACGCCGGCGACGGCTACGAGATCCGCAAGTAC
CCGCCGTGCGTCGCCGCCGAGGTGACCTACGACCCCAAGGAGATGAAAGGCGACCGCGACGGCGGGTTCCAGGTCCTCGC
CAACTACATCGGCGCCTTCGGCAAGCCGCAGAACACCAAGCCGGAGGCCATCGCCATGACGGCGCCGGTCATCACCTCCT
CCGGCGGTGGCGGCGAGGCCGAGCCGATCGCCATGACGGCGCCCGTGATCACCTCCTCCGAGCCGGAGCCGGTGGCGATG
ACGGTGCCGGTCCTCACGGCCGAGGGCCGCGAGGAGCACGCGGGCAAGGTGACGATGCAGTTCCTGCTGCCGTCCAAGTA
CGCCAAGGCGGAGGAGGCGCCGCGGCCGACGGACGAGCGGGTGGTGCTGCGGGAGGTGGGGGAGCGCAAGTACGCCGTGG
TGAGGTTCAGCGGCCTGGCCGGGGAGAAGGTGGTGGCGGAGAAGGCGGAGGGGCTCAAGGCCGCGCTGGAGAAGGACGGG
CACGCCGTCACGGGCCCCTTCGTGCTCTCCCGCTACAACCCGCCGTGGACGCTCCCGCCGCTGCGCACCAACGAGGTCAT
GTTCCCCGTCGAGTGATCGATCGTCCGGCCAGCCGGCCGCCTTATGTATGCAGCTACCGTGTGCTAGTATCTCATTAGCT
TTGTAGCCTTTCCATTCTGTTTAA----------------------------GCACAATAAATAATCGAATGGTCTGCTG
AATG----------------------------------------------------------------------------
--------------------------------TTGATATTGACATGG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CCCTGGACGAACTGACGAAGACCTATATTTATCACTGCAAAGCGGCA
ACACCTCAGACAC-CACAACTCGTTAACTAAATTGGATTCAGAAACTCTCAAACTC-ACGTGTCCGTGCTACTTCCTCAA
ACAGTGGATTGGCGTAGCAGAGTTCTGCCGCCTCGCACAAGAAGGAAACAGAGTACTCTGCTATGCTCAATAGACTGCTC
ATTTTTGTTCTTCTGCCAAATCCAAAAAATGAGAGCAAACTATATGACTTTGCTGGGAGAGTAAACATAGTACTCC----
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3D_577
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CCGGTATTCTCGTTGGTATGAAGAGGTGTATATGCCGTTTGCCCCATTTTCTCGCAAGTCGACG
TTGAG-----CCCTCTTCGTCGGAACACGGCGTGCAAGTCAAAGCCGGCGAGCGGAACTTTCTCTCCAAGCCAAAAACGG
AAGGAAGA---AAG----------GAGAAGGAACGTGCGTACAAGACGAAAATTCCTCAAATAATGTGCCGAAATCGAAA
ACGCCTCCGTGGAGCAACGCGCGCCGCAGCTCACGCACCATACCTCGTCCACTCGTCCGAATCTCCCGCTTGTTCTTAAG
CCCCAGCGCCGCCGAGCCAAATCAAGATTCACCCGGCGAACCCATCCCAGCTAGCTCAAAGACCTCTGCTGAGCCCTCCA
CCGAACAAGCCTCGCCGC--------------------------GACCGACGCCGGCCATGGGTCTGGCGATGGGCAAGC
TGATGCTGGGGAAGATCATCGTGGAGACGCCGAAGCACGAGGTGCTCCACACCGGCGACGGCTACGAGATCCGCAAGTAC
CCGCCATGCGTCGCCGCCGAGGTGACCTACGACCCCAAGGAGATGAAGGGCGACCGCGACGGCGGGTTCCAGGTCCTCGC
CAACTACATCGGCGCCTTCGGCAAGCCGCAGAACACCAAGCCGGAGGCCATCGCCATGACGGCGCCGGTCATCACCTCCT
CCGGCGG---CGGCGAGGCCGAGCCGATCGCCATGACGGCGCCGGTGATCACCTCCTCCGAGCCCGAGCCGGTGGCCATG
ACGGTGCCGGTCCTCACGGCCGAGGGCCGGGAGGAGCAGGCGGGCAAGGTGACGATGCAGTTCCTGCTGCCGTCCAAGTA
CGCCAAGGCGGAGGAGGCCCCGCGGCCGACGGACGAGCGGGTGGTGCTGCGGGAGGTGGGGGAGCGCAAGTACGCGGTGG
TGACGTTCAGCGGTCTGGCCGGAGACAAGGTGGTGGCCGAGAAGGCGGAGGGGCTCAAGGCCGCGCTGCAGAAGGACGGG
CACGCCGTCACGGGCCCCTTCGTGCTCTCCCGCTACAACCCGCCGTGGACGCTCCCGCCGCTGCGCACCAACGAGGTCAT
GTTCCCCGTCGAGTGATCGATCGTCCGGCCAGCCGGCCAGATTATGTATGCAGCTACTGTGTGCTAGTATTTCATTAGCT
T-GTAGCATTTCCGTTTCGTTTAAGCTGGCGCGTCACGTGTTGGGTTCGTTGGCACAATAAATAGTTGAATAATCTGATG
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------------SS-----S----SS
SS----------S-------------------------------------------------------------------
------S------------------------------------------S------------------------------
-------------SSSSSSSSSSS-----S----------------------S-S-----S----------------S--
------------------S-S----------S--S-------------------S-------------------------
-------------------S-------------------S--------------------------S-------------
-----------------------------------------------S-------S--------S----S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
-----------SS-----------------------S-----S-------------------------------------
-S------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S------SSSSS-S--S---------------S----------------------------S--------
------S-----------------------S-----------S----S---------------------S-S--------
--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S------------------S-S---
----S-------SS-----------------------S------------------S-----------------------
-------------------------S------------------S-----------------------------------
------S-----------S----------S--------S-------------S------S-------------SS-SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_330
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CGATGCATCT
TCCGCTTGTG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>reverse_1701
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CAGGCCACCTCATGTATGCA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
