>input_sequence_72075
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-----------------------------------------ATGGCTCCGAGCTGCTGGTTCTTCTTGGCCCTCTGGCTA
CCATTGGTGCTCGTGGTCGTGGCGGCTGTGCAGCAGGTGGAAGCAGGCTGCTCGGGCTTGGCCAAGAGATGCGGCAACCT
CACCATCTCCGACCCTTTCTGGCTCAATGACTGGGAGACGGGAAGACCGTGTGGCTACCCGGACTTCGAGGTCACTTGCT
TTAACAGCAGTACTCCAGTTCTACTCAGCTCTGTACCCCTCAGTTACGGCTTTGCAATCGTCAACATCTCTTATGAGGAA
GAAAGGTTGCACGTGGTTGATGTAGGCAAGCTGAAATTGCTG------------------------AACGCCTCTAGCAG
TTGCGAATTCCCGGTCTGGAACACCACCATCAACCTGAACCTCGTCTTGTACAATTGCACGGAGCA---GGCGGGAGCAG
CGGCTCTGG---CACGCCGGCAGAGAGAGCTGGTGCCGACGAGGATGAGGTGCGGGAACGGGAGCGAGGTGTATGCCAAA
GCGGGAGGCCGTTACAGCGAGGAGACGAGCGGCTACAGTGGCTACGAGGGCTGCGACG-------CTGCAGTCACGCCGG
TGCTGGGCGCATA---CGGCAAGGCTGACGCGGGCGACTACAAGCGGCTCATCAGCCATGGCTTCCTCTTGACATGGGAG
CTC------------------CCACGTAAGTTCACCCACCAAATCATCTTTTGA--------------------------
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>chr3A_1_TraesCS3A01G034900
AGGAGGATTTTTCTTGGGAATTGGGGCACAAGGCGATGAGTAGAAAAAATTATAAGGGTTATAATCTTTAGATTCGAGCA
TGTCCTATAGAAAGAATTCTGAAGACTAAAGTTATACACAATCCATTGTAATTCATTTGGATCAAAAAGGCCCAAATCAT
TCCATGGATTTGCTATTTGTAACTTGGCTAAGAAGTTGTTTTTTCCTATGCTGGCTATATCGCACATCACAAAGTCTAAC
ATTATAAAAACAAATTGTGTTTAAATTTTTAAATATGCAACTGTAGGTTAAAAGGCTTTATTCATTGGATACTTGTTATT
ATTCCCGCTGCCCGGGTTTATAATGCCAATTAATCTTGTGTTAACTCAGACGGTTTTGAAACTTATCAGGTTCATAGGAG
AAAAAAACTCAGTCTATAAGTCCTACACAATTGGCTGGTTTATAAGGCCTTGTGAGACAAGATTAATAGTAGGTACTCCC
TCTGTAAACTAATATAAGAATGTTTAGATCACTACTTTAGTATTCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACC
AGGCAAGTGTGAATTGCAAAATTAATGGTTCTATACCAGCCAAGTGTGAAGGTTGTACCAGGATTATAACCTGGTTAGAT
AGCAGACAAGAGCGTGAAGTAGTCGGAACCGGAAAGAACCTGCCGAAGCATCCTGGTTCGGAAGTCACATCACTGGTTAA
AAGAAGGTCATGATCATGGCTTACCTCGTCAAAGGGGAACCCTGAAGTTTGATAAGTCATGGCTATACTAGGCCATGTGT
TCACTCGGGGTATATTTTGTGGATGACGATCATTTGCCCCAATTTTCCAATCTAATGTTGTCCGCTCACTCGCCGTCCGT
CGCCATATATCGTTCGTGCTCCGTCCAACCGTATTCTCTCATA-CCTGTAGCCTATGACCACCCTTCCAGCCACGGTCCT
CCTTTGCTGTTCACTCTAATCTTCCCAAATCTTCTACACCTATGGCTCCGAGCTGCTGGTTCTTCTTGGCCCTCTGGCTA
CCATTGGTGCTCGTGGTCGTGGCGGCTGTGCAGCAGGTGGAAGCAGGCTGCTCGGGCTTGGCCAAGAGATGCGGCAACCT
CACCATCTCCGACCCTTTCTGGCTCAATGACTGGGAGACGGGAAGACCGTGTGGCTACCCGGACTTCGAGGTCACTTGCT
TTAACAGCAGTACTCCAGTTCTACTCAGCTCTGTACCCCTCAGTTACGGCTTTGCAATCGTCAACATCTCTTATGAGGAA
GAAAGGTTGCACGTGGTTGATGTAGGCAAGCTGAAATTGCTG------------------------AACGCCTCTAGCAG
TTGCGAATTCCCGGTCTGGAACACCACCATCAACCTGAACCTCGTCTTGTACAATTGCACGGAGCA---GGCGGGAGCAG
CGGCTCTGG---CACGCCGGCAGAGAGAGCTGGTGCCGACGAGGATGAGGTGCGGGAACGGGAGCGAGGTGTATGCCAAA
GCGGGAGGCCGTTACAGCGAGGAGACGAGCGGCTACAGTGGCTACGAGGGCTGCGACG-------CTGCAGTCACGCCGG
TGCTGGGCGCATA---CGGCAAGGCTGACGCGGGCGACTACAAGCGGCTCATCAGCCATGGCTTCCTCTTGACATGGGAG
CTC------------------CCACGTAAGTTCACCCACCAAATCATCTTTTGATCCAGTTTGTAGCTGGGCTACGACGA
CGGACGCGCAGTGCGTGCGTCGCCTTGCCTTGGATTTCCCTTATCCGATCAAGCAAGCTATCAATCGAATCATGCCACTC
TTATTAGAGGATAAGGCCGTACGTGGTTGTGGCGGC----------------------GGATGGATGTGGCCGGCGCGGC
ATTTCCACCTTCCTGCTCGCTCAGTAGGCTGTGCGTGCGTCCACTTGACCATAGCCAAGTTGGCACGTCCTGGCAACACA
TGCTTGTTCTAGCTAGATTTTCTCCGGTGCAATGCATCTTGGCCGGCAATCATGTTGGCATTGCGCAAGTTAGTGCTGGT
ACCCTTTTTATCTTCCGTAGGCTGTCTGTCGTGTTGGTGCATTTCATCCTTGCGTGCGGTAGCTGCATGACCTCGTTGT-
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--------GGCCACGAGTGATGGTCGGGTAAACGTGTAGCGCCGCCGTTAGTTTCTGATGAGCTGGGCGGCAGTGCCTGT
CTATCTTTTGATCCTGTTTTTTGACCCACAGTAAACTTATCCTGGCATTTGCCTTTTTACCTGGGTGATCTTTGTAGTAT
CGTTTCTGTGGGTCTCTGCGTCTGCCCATGTAACTAGATCGATTTTTCTCGCTCTCAGTTCACAGCGCGGGTGCTTTTCC
CCCCTTTATTATGCAAACAAAGAGTTCTTTCTCTCGCCGGCAACTACTACACTAGGACCGTACTAGTACGACTGATTAGT
GATGTAAGGTAAATTACTCCCAAGTACAAGTGGGTTCTAATTTACACAAGTAGATGCTCATACATTAGCACAAGTGGAAA
CAAAGTTACTGCTAGGCTACGGCCCAAGACTGGATCACCCCAATTTGTACACTCAGCCCTGAAGTCTGGCACTGGCTGAC
AGTAGTGTCGAAAAGGTTCATACGCGATTCATCAGTCTTCTAGTGAAAATTTCGGATTTTGAAAAACATGCTAAACATTG
GACTTAGTATATGCTGTAAGCCGGTAGGTACCGAGCACACGTACG
>chr3B_592
TATCCT--------------------------------------------------------------------------
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--------------------------------------GCGAAGTGTGAAGGTTGTACCAGGATTATAATCTGGCCAGAT
AGCCGACGAGCGCATGAAGTAGAGAT-ACCGAAAAGATCCTGGTTCT---------------AGTCACATCACTGGTTCA
AAAGAGGCCATGATCATGGCTTACCTCTTCAAAGGGGAACCCCAAAATTTGATAAGTCATGGCTCACATCACTGTGTTCA
T---------TATATTTTGTGGACGACGATCATTTGCCCCAATCTTCCAATCAAATGTTGTCCGCTCACTCGCCGTCTGT
CCTCATATATCGTTGGTGCTCAGACCAAGCGTATTCTCTCATACCCTGTAGCCTATGACCACCCTTCCAGCCACGGACCT
CCTTTGCTGTTCACTGCAATATTTCCAAATCTTCCATTCCTATGGCTCCGGGCTGCTGGTTCTTTCGGGCGCTATGGCTA
CCGCTGATGCTCGCGGTCGCGGCGGCTGAGGAACGAGCGGA---AGGATGCTCGGGCTCGGCCAAGATGTGCAGCAACCA
GACCATCTCTGCCCCGTTCTGGCTCAGGGACAACAAGGCGGGACGAGCATGTGGTCTCTCAGATTTTGAGGTCACCTGCG
T---CAACAACACTCCAGTTCTCCAGAGCTCTGTTCTCTTGGGGCACGGCTTTGCAATCATGGATATCAAGTACGAGGAA
CGCAGCTTGCATGTCGTTGATCGGGGCAAGCTGGAACTGTTGTCCAACGGCTGCCTGCCGATGCAGAACACCTCCGCCAA
ACTCGGCGTCCAGTTCAGGATCGCCCCCGTCAACCTGGACCTCATCTTGTACAACTGCACGGAGAAGGTGGCTGGAGCAG
CGGCTCTGGGCGCACGTCGGCGGAGAGAGCTGGTGCCGACGGGGATGGGGTGCCGGAACGGGAGCAAGGTGTTCATCCGC
GCTGGAGGGCGTTACAGCGAG---ACGGGCGGCTACGGCGGCCATGCCGTGCGAGGCTGCGCCGCCCGCTGTCCTGCCGG
TGCTGGGCTCGTCCTCCGGCGAGGTGAACGCGAGCGACTACGAGCGGCTCGTCAGGGATGGCTTCCTCTTGACATGGGGT
CTGCCGCCTGCACCTGCACCTCCACGTAAGTTGAGTAGCCAAATCATCTTTTAACCAAGTTCGTGTGGCTAAGGTGT---
---------AGTACGTGCTGTATCTTTACTTGGATTTGCCTCGTCG----AACCAAGCTATCAATCATGC---------C
TTATTTGAGGATAAGGCCGTGGACCCGTACGTAGTCGTGGTGCCCAGTTGTGTCGGATGGATGGATGTGGCCAGCGCGGC
ACTTCCACCTTCCTGCTCTCGCCCAGTA-----CGTGCGCCCACTTGACCATAGCCAAGTTGGCACGTCCTG-----ACA
TGCCTGTTCTAGCTAGATTTTCTCCGGTGCACTGCATCTTGGCCGGCAATCATGTTGGCATTGCGCAAGTTAGTGCTGGT
ACCCTTTTTATCTTCGGTAGGCTGTCGC----GTAGATGCATTTCATCCTTGTGTGCTGTGGCTGAGACCTAGTTTCTGA
ATGAGTTGGGCGGCACTGCTTTATATCCTGTTTTAGACCCAGTGAAATCCTCCTGGCATTTGCATGTTTTAGTGTGACAC
CTCGTTGCGGCCACGAGTGATGGTCGGGTAAACGTGTAGCGCCGCTGTTAGTTTCTGATGAGCTGGGCAGCAGTGCCTAT
CTATCT--------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------------------------S----SS----
---S---S--S--S--------SSSSS----S-----S----SSSSSSSSSSSSSSSSSSSS----------------S-
--SS---S-------------------S--------------SS--S-----------------SSSS-SSSSSSSS-SS
-SSSSSSSSS-------------S-------------------S--------S------------------------S--
-SS-----------S------S-S----S-----------------------------------------------S---
---------------SS---S--S----------S-SS------------S-------------SSS---S--S------
--SS--S------S-----S--------S-S-S-SS-S---SSS---S----------S--------SS---S------S
S--------S-S---S----------SS---SSSS--S-----S--S-S-----SSS-S-S--S--S--------S---S
-SSS--S--SS-----------S-SS--------S-S-S-SS-SS--------------S-SS-S---SSS--S------
SSS--S-----S--S------SSS---------S--S--S-----------------------------S----SSS--S
SSS--SSS---S-S--S---S-S--S--S--------S-----S----------S---------S-------S-------
----------------S----S-------------------S-----S-----S-----------S------SSSS-SSS
--S-----S------------SSS---S--------S-S---S-S-SS-SSS-S-S-S--------S--S---SS-----
--------S-S-S-------S---SSS-----S--------S--------S----SS---------------------SS
--S-----------------------------S-SSSS--------------S-S-S----S--SSSSSSSSSSS-SSSS
SSSSSSSSS---S-----SSSSS---SS---------S---SS--SSSSS--S-------------SSSSSSSSSSSSS-
-----S--------------SSSSSSS-SS-SS-S-------------------------------------S-------
-S----------------S-S-SSSSSSSSSSS------S--------------------------------SSSSS---
---S---------------------------S------------------------------------------------
---------------S----------SSSSSS--S-S---------------S----S--S----SSSSSSSSSS-SSS-
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---------------------------------------------S----------------------S---------S-
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_44
------------------------GGCACAAGGCGATGAGTAGA------------------------------------
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>reverse_1235
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----------------------------------ACCCCTCAGTTACGGCTTTG--------------------------
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>forward_1148
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--------CCGACCCTTTCTGGCTCAAT----------------------------------------------------
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>reverse_2400
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-------------------------------------------------------------------------------T
CGTTTCTGTGGGTCTCTGC-------------------------------------------------------------
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