>input_sequence_72055
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----------------------------------------ATGGCGCAGGCCAAATGCGGAGTAGATTCCCAAACCTACG
CCCAGATCGACACCTGTAGTCCAGGCCGGGTGTTCGACGCTGCCGTGACCGTCGCCCCGAGCGACGACGAGCGGCTTGCG
CACGGGGGCTGCCGTGCGGTCGTCGACGAAGAGCAGGACACCAAGGTCAAGATCTCGGAGGCGCTGGAGGCGGCGGCGCG
GGCCGTTGGGTACGACCCCGTGGAGAGGTCCGACGCCGCGGCCATACGCGCCGCGGAGGCGCGCGCCGTCGGCACCGGAG
TGGACATCCCTGCCGGGATCGCAGCGCAGGCGCAGGCTGCAGCGGACGCCAACGCCACGGCCGCGCACGCCGAGGACAAG
ATCACCATCGGAGACGTCCTCAAGGTACGTGCAGTCCTCCGCACGACCACGAACATGCATGCAGTATGCATGCGTGCATA
CA---------TGCGGC------GCAGTCACTTGTCTTGCATCTCTCACCGGATGCATTATCTGTTGTGTGTGTTAGTGG
AACGCGACGGCGAAGCTGCCTTCGGGCAAGGCGGTGACGAGGGAGGACGCGGCTGCCGCGGTGGAGGCGGAGGCGGCGCA
TGCCCCCGGCAAGGCGACCAAGCCATACGGTGTGGGAGCGGCGCTTACAGAGGCCGCGAGGCGCAATCAGGAGGGGACTT
GCCGTAAATAG---------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G395700
TCCGGACTAAGTCCTCCGGTTTATATAGACACCGGGAGGATCTAGGGTTACACAAGGTCGGTTACAAAGAAAGGAATATA
CACATTTAATCGCCAAGCTTGCCTTCCACGCCAAGGAGAGTCCCATCCGGACACGGGTAAAGTCTCCGGTCTTCGTATCT
TCATAGCCCATCAGTCCGGCCCATGGCTAACAGCCCGGACGCCCGAGGACCCCTTAGTTCAGGACTCCCTCATTTGCCCC
TTCCCCCGCACTCCTCTACGTACCGGGGGAAACCCTAGGATTTGTCCGGGCAGCAGCGTCGTCGGCGTCGCTATCCTTCT
TTATGGTGTTGCTTGGTATGCGGCGGTCCGGAATGCTTGAAGTGTGGTGGAATTCTCCGGTGGGCGCAGCGGTTGTGGGT
CCTCATCGTTTTCGTTGATCCGTCGCTGTTCGCATTTGTTTCTTTTTTGTTTTTTAGGCGTGACTGTGCTGCTTCCGCCC
CAACACCTATCCTTGACTATATCGATGTTGGTTGCTTTATAATTTATAATATAAAGCGGGGAAACCCTTTTTCGTTGGCT
ATATCGATGTTGGTTGCTTTATAATACAAAGCGGGGAAACCCTTTTTCGTAAACCTAACGACTGAAATAGTCAATTTTCG
TGGACAACTTGCACATCGTTGATAGTTCCCCAATCCGAACAGAAAACCCCGCCACCTTTCGATGGTTCTTCAGCGGTGAC
AATGAAATGGCTCGACGTGAGTGGTTTCGTCAAAGTAAAAGCTCAGGTGACGCGGCTGTATCAAGGGCATTCTGCCTCGA
GCCAGGTGTCGCCGAGCATGCCCTTGCCACAAAACGGCAGTAGATTCCCAGCTGACACGTATCACCACGTGTCATTCCCG
ACCACGTCCCCGGCTGGACTGCCGCGGCCGTTCTATAAACTCAGCCGCTAGTGTACACCGCCCGCCGCACACGACGGGAA
GCGCCCGCGCGAGAGGCAGCTGAACATAGAAGCCAGAGCCATGGCGCAGGCCAAATGCGGAGTAGATTCCCAAACCTACG
CCCAGATCGACACCTGTAGTCCAGGCCGGGTGTTCGACGCTGCCGTGACCGTCGCCCCGAGCGACGACGAGCGGCTTGCG
CACGGGGGCTGCCGTGCGGTCGTCGACGAAGAGCAGGACACCAAGGTCAAGATCTCGGAGGCGCTGGAGGCGGCGGCGCG
GGCCGTTGGGTACGACCCCGTGGAGAGGTCCGACGCCGCGGCCATACGCGCCGCGGAGGCGCGCGCCGTCGGCACCGGAG
TGGACATCCCTGCCGGGATCGCAGCGCAGGCGCAGGCTGCAGCGGACGCCAACGCCACGGCCGCGCACGCCGAGGACAAG
ATCACCATCGGAGACGTCCTCAAGGTACGTGCAGTCCTCCGCACGACCACGAACATGCATGCAGTATGCATGCGTGCATA
CA---------TGCGGC------GCAGTCACTTGTCTTGCATCTCTCACCGGATGCATTATCTGTTGTGTGTGTTAGTGG
AACGCGACGGCGAAGCTGCCTTCGGGCAAGGCGGTGACGAGGGAGGACGCGGCTGCCGCGGTGGAGGCGGAGGCGGCGCA
TGCCCCCGGCAAGGCGACCAAGCCATACGGTGTGGGAGCGGCGCTTACAGAGGCCGCGAGGCGCAATCAGGAGGGGACTT
GCCGTAAATAGCCGGACAGGCGTGTCTA-TTTTGGGACCGATCGGAATAAAGAGGAAGTATACATAACATGTGGCGAAAC
TATTTCACTAAGTGCGGTAGCATAG-GCCTGTCGGCTAGGCCCTGCACAACCAAGGATGGATGGGGCCCGTTTTGGCTCC
TGGGTGCCACGCTCATCAGGATTCAGGAGTGCAGCACCTGT----------------GAGTCAGGTGATACGTGGGAGTA
-------TAGCGTAGCGTCGACACGTCGGGACTACACAAAAGGGTCAGCTGTGTGAGAAAGTTTCGCCCACGATTCACTT
TATAATTTAAACATGTCAAAAAAATCTAAAAGAATCATGGATGTTCCAACACATGTAAGTAGAGAACCCCTAAAAAATTT
CAGATCAAAATTCGAAATACACAAAAAGAAATCTAAAAGACAAATTCAGATATGAATAGTGTCATTTTTGCTTTTGTCTT
CTTTCAACACTATTCATGATGAATTTGTTTTTTCTTTCTCTTCTCTATTTTGAATTTTGATCTTTTTTTTTGCAATTGTC
GACATATGTCTTGTGAACATCCACGTTTTTTTAAGATTTTTTTTCATCTTCAAATTTGGATTTTACAGGTTGGTATTATG
GTATCATGTAAGAACTGGTATCATCAGGTATTTTTCCTACATTACCAGTGGCGGAGCTATAAAACAAATATTAAGCGGGC
CAGAGAGCACAAAATACGTCGTGACATTCAATTTGACGGTTGCCACGGTAGCCAGCGGCTGACGTGCGCTGTAGTACCGT
GAGATAGTGCTTTTATCGAGGAACGACCAGCAAATGCTTCAGTGCAATGCATGGGAGGCTCCTGTCTGCTGCGTTCCTCT
CTACATCGGCGTAGGTCAGCGTTGGGGACTTGGCTTTATATAAAAAATTTGCTCCAGCCCTGGGCGGGCCATGGCCCATT
GAGCCTTGCTGAAGCTCCGCCGGAATACATTACTACTACTACACTATATTGTGGGACGGAGGGAGTAGTATATAAT
>chr5A_607
TCGAA---------------------------------------------------------------------------
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----------------------------------------------------ACCTAACGACTGAAATAGTCAATTTTCG
TGGACAACTTGCACATCGTTGATAGTTCCCCAATCCGAACAGCAAACCCCGCCACCTTTCGATGGTTCTTCAGCGGTGAC
AATGAAATGGCTCGACATGGGTGGCTTCGTCAAAGTAAAAGCTCAGGTGACGCGGCTGTATCAGGGGCATTCTGCCTCGA
GCCAGGTGTCGCCCAGCATGCACTTGCCACAAAACGGCAGTAGATTCCCAGCTGACACGTATCACCACGTGTCATTCCCA
ACCACGTCCCCGGCTGGAGTGCCGCGGCCGTTCTATAAACTCAGCCGCTAGTGTACACCGCCCGCCGCACACGACGGGAA
GCGCCCGCGCGAGGGGCAGCTGAGCACAGAAGCCAGAGCCATGGCGCAGGCCAAATGCGGAGTAGATTGCCAAACCTACG
CCCAGACCGACACCTGTAGCCAGGGCAGGGTGTTCGACGCCCCCGTGACCGTTGCGCCGAGCGACGACGAGCGGCTTGCG
CACGGGGGCTGCCGCTCGGTCGTCGACGAAGTGCAGGACACCAAGGTCAAGATCTCTGAGGCGCTGGAGGCGGCGGCGCG
GGCCGTTGGGGACGACCCCGTGCAGAGGTCCGACGTCGCAGCCATACACGCCGCGGAGGCGCGCGCCGTCGGCACCGGAG
TGGACATCCCTGCCGGGATCGCCGCGCAGGCGCAGGCGGCGGCGGACGCCAACGCCACGGCCGCGCACGCCGAGGACAAG
ATCACCATCGGAGACGTCCTCAAGGTACGTGCAGTCCTCCGCACGACCACCAACATGCATGCAGTATGCATGCATACATA
CA---------TACATCTGCGTTGCAGTCTCTTGTCTTGCATCTCTCACCGGATGCATG-TCTGTTGTGTGTGTCAGTGG
AACGCGACGGCGAAGCTGCCTTCGGGCAAGGCGGTGACGAGGGAGGACGCGGCTGCCGCGGTGGAGGCAGAGGCGGCGCA
TGCCCCCGGCAAGGGGACCAAGACATACGGTGTGGGAGCGGCGCTTGCAGAGGCCGCGAGGCGCAATCAGGAGGGGACAT
GCCGGAAATAGCCGGACACGCGTGTACA-TTTTGGGACCGATCGGAATAAAGAGGAAGTATA------------------
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>chr5B_658
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-----------------GTTGATGGTTCCCCAATCCGAACAGAAAACCCCGCCGCCTTTTGATGGTTCTTCAGCGGTGAC
AATGAAATGGCTCGACGTGGCTGGTTTCGTCAAAGTAAAAGCTGAGGTGACGCGGCTGTATCAGGGGCATTTTGCCTCGA
GCCAGGTGTCGTCGAGCATGCCCTACA-ACAAAGTGGCAGTAGATTCCCAGCTGACACGTATCACCACGTGTCATTCCCG
ACCACGTCCCCGGCTTTACTGCCGCGGCCGTTCTATAAACTCAGCCGCTAGTGTACACCACCCGCCGCACACGACGGGAA
GCGCCCGCGCGAGAGGCAGCTGAACACAGAAGCCAGAGCCATGGCGCAGGCCAAAGGCAAAGTAGATTGCCAAACCTACA
CCGAAATCGACACCTGTAGCCCCGGCTGGGTGTTCGACGCAGCCGTGACCGTCGCCCCGAGCGACGACGAGCGGCTTGCG
CACGGGGGCTGCCGCGCGGTCGTCGACGAAGAGCAGGACACGAAGGTCAAGATCTCGGAGGCGCTGGAGGCGGCGGCACG
GGCCGTTGGGGATGACCCCGTGGAGAGATCCGACGCCGCGGCCATACGCGCCGCGGAGGTGCGGGCCGTCGGCACCGGAG
TGGACATCCCTGCCGGGATCGCCGCTCAGGCGCAGGCTGCGGCGGATGCCAACGCCACGGCCGCGCACGCCGAGGACAAG
ATCACCATCGGAGACGTCCTCAAGGTACGTGCAGTCCTCCACACGACCACGAACATGCATGCG-----------TACATA
CATCTGCGGACTGCGGG------GCAGCCACTTGTCTTGCATCTCTCACCGGATGCATG-TCTGTTGTGTGTGTCAGTGG
AACGCGACGGCGAAGCTGCCTTCGGGCAAGGCGGTGACGGGGGAGGACGCGGCTGCCGCGGTGGAGGCGGAGGCGGCGGA
TGCCCCCGGCAAGGCGACCAAGCCATACGGTGTGGGAGCGGCGCTTACAGAGGCCGCAAGGCGCAATCAGGAGGGGACTT
GCCGGAAATAGCCGGACAGGCGTGTATATTTTCGGGACCAATCGGAATAAAGAGGAAGTATACATAACATGTGGCGAAAC
TATTTCACAAAGTGTGGTAGCATAGCGCCTGTCGGCTGGGCCCTGCACAACCAAGGATGGGGCCCGGC----TTGGCTCC
TGGGTGCCACGCTCATCAGGATTCAGGAGTCAGGCTATACATAGCATCAGGATTCAAGAGTCAGGCGATACATAGTGTAG
TGTAGCGTAGCGTAGCATCGACATGTCGGGT-TACACAAAAGGGTCAGCGGTGTGAGAAAATTTCATCCAGGATTCACTT
T-------------------------------------------------------------------------------
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>SNPs
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
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-------------------S-------------------------------------------S----------------
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--------------------------S-----------------------------------------S-----------
-------------------S--S---S-------------S---------------------------------------
--------------S-----------------------------------------------------------------
----------S---------------------------------------------------------------------
----------------------S-----------------S---------------------------------------
-------------------------------------------------------------------------S-S----
----------------------------------------------------------SS--------------S-----
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----S--------------------S------------------------------------------------------
--------S-----S----------------------S----------------------SSSSS-S-SSSS--------
------------------------------SSS--SSSSSS------------------------S-----S-S-SSSSS
----------------S------S------SS-----------------S----------S----SS---S---------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_382
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------------------------------------------TGTGGTGGAATTCTCCGGTG------------------
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>reverse_1914
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-------------------------------------------------------------------------GGGAGTA
TAGCGTAGCGTCG-------------------------------------------------------------------
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