>input_sequence_72054
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----------------------------------------------CTCCCACCCTTTGGCTGCATCTTCAGTTTCAGAG
GCATGCACGCGCTTATGCCAATTGCTGGACTACATCATACAGCAGCA---AGTCAGGGCAGAGCAATGCTCCATTCCATG
GCGCCCCTCCA---CGCCGCCGCCGCCACTGCGCAGCACGCAGCCGTCGGCGCGGCTCCAAGCAGAGATGCTGCCCCGAA
GAAGAACGGCGGCAGCGTTCCAGCCGGACGCGACACCAGGAGGTTCACTTCATTTCCAACTGTCCTTTTTCTCTGAGAGC
CTGCGATCGATACGTATCATCAATAATATCTATCCT-----------TGATGCGTTCTTATCGTACGCAGGGCGTTCCTG
AGCGGCGTGGTGGTCGCCGCAGCCGGCGCCGGCGTGCTGCTGGGCCACGTGGACGCGGCACCGGCGGCGTCCAAGAGGCG
GGCCCCGCCGCCGCCGTCGGAGGAGAAGGAGAAGAAGGACCCGAACCTCAGCGGCGTGCAGGCCAAGGTGTTGGCCAGCA
GGAAGCGGAAGGAGGCCATGAAGGAAGCCGTGGCCAAGCTGCGGGAGAAGGGGAAGAATCCCGCGGACGCGGCCAGCGCT
GTAACCGGAATAAAGCCCAGATCGACAGGGGCCGTTGTAGAGTGAGTTTAT-TTGGGTGCCGCTTTTTTTTCTTTTTGAG
AATAATTTGGGTGCCGCTTA------------------------------------------------------------
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>chr5D_1_TraesCS5D01G311200
ACAGAGAGTAGATTAATTATACTATACAGTTGGCAGAGTGTTCGGATTTAGAGAGGTAAAAAAAATAGTTGGCATATTTT
TGGGAGACAAAGAGAATAGTTGTCTCTTTGTGGACAAATTAGAATTTAAAATTCTGGATTTCACTTTGCCAAGGAAAACC
GTTTCCAAAATTTTAAATAATCTAGGTATGTCACTGTTGAGCATAGGCAATTGTGTTGC-AAAAAGCTTATTTTTCTATA
GTTGCATCATAATTGAGCAGCTTCATATTTTCGTAGAAGATCTAAATAAGCATTCATGTCGTCACCAATTATGTGTGCAG
CTTAATGTTTAGGTATATAAAGTTCAATACAACTGGCGCCTCCA-CCCAGTTAGAAAACTCCGCATAAATTTTGTCACTT
ATGGTCCAACTATTATGAAAATAATTGAACAACAAACAATTGTGTTGCAGAGAAAAGAGATTAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAGCCATGCTTACTAGGCTAGGACATCGTCATATTTTT
TTCTCCCGTTACAACGCACAGGCATGTTTGCGAGTGCTAGTATATAAAAAAGGCATAGGACGTTCCTCCGACGATCCACA
AATTCGACGTGCAAATTCCGTCTGTGTCCTTCCTTACCCACGTGTTGTTTTCTCAACAGTCAGATGCAGAGGCGGAAAAA
GGCCCTACGTACGTGAACCGG----ACTGCGGCACAACAATCGCATATGCTTTCGGGGCCTTATCCATGTCACGGGATCG
CAACCAATGGGAACGTGACATGACGCCCGCGTGGGGCCACGTCTATCTCCCACCCTTTGGCTGCATCTTCAGTTTCAGAG
GCATGCACGCGCTTATGCCAATTGCTGGACTACATCATACAGCAGCA---AGTCAGGGCAGAGCAATGCTCCATTCCATG
GCGCCCCTCCA---CGCCGCCGCCGCCACTGCGCAGCACGCAGCCGTCGGCGCGGCTCCAAGCAGAGATGCTGCCCCGAA
GAAGAACGGCGGCAGCGTTCCAGCCGGACGCGACACCAGGAGGTTCACTTCATTTCCAACTGTCCTTTTTCTCTGAGAGC
CTGCGATCGATACGTATCATCAATAATATCTATCCT-----------TGATGCGTTCTTATCGTACGCAGGGCGTTCCTG
AGCGGCGTGGTGGTCGCCGCAGCCGGCGCCGGCGTGCTGCTGGGCCACGTGGACGCGGCACCGGCGGCGTCCAAGAGGCG
GGCCCCGCCGCCGCCGTCGGAGGAGAAGGAGAAGAAGGACCCGAACCTCAGCGGCGTGCAGGCCAAGGTGTTGGCCAGCA
GGAAGCGGAAGGAGGCCATGAAGGAAGCCGTGGCCAAGCTGCGGGAGAAGGGGAAGAATCCCGCGGACGCGGCCAGCGCT
GTAACCGGAATAAAGCCCAGATCGACAGGGGCCGTTGTAGAGTGAGTTTAT-TTGGGTGCCGCTTTTTTTTCTTTTTGAG
AATAATTTGGGTGCCGCTTAATTTGCCAGCTTCTCACTTGTCGATGACGAGCACATAACAGAGATCGATCCGCCGTATCT
TAGCATAAATATTTACTGGAATGGTCATCGTTTTGCTGCGTGCGATG-AAG--------TACCGGCTTGAATTGATGCG-
TACTATCTGTGAATA----ACCTGGCAAGGCCAGCACCAG----TCAATGATGAACGACGTAGATGAAGTTCACCAAGCA
AAAACT--------------------------------------------------------------------------
---------------------------------------------------------------TCGCTCTGGAACTTGAT
CTTCACCAAGCAACTTTGCCGGCTAATTTTTGTAAGAATATGTTCAAACTTATGATACTGAT------------------
-----------------------------------------ACATTACATTCCTTTACGAAATTACATGAGAAATCTATT
ACTACTACTATATCTCGAGAGTACAAATAAACTTGTGTTCATCATCT---ACATCAGAACAGAGGTAGCGCGTAAGCTAA
CTCCTAGATACAATGGACTTGCCAGTAATAAACTTGGGGCGCTTCTTAAATCCACTAATCTGCTTTTGAAGTTCCTTCTC
CAGCTTCGGTTTGTCGCCGCAACTTGTCAAGACAAGTTCATTCAGGTTTTGGAGGA---CCAGCACAAGGGACAAGCCAT
CCTTACTGTCGTCCAAGTTAATGCATTTCTTCACTTCAAGTTTCTCGAGCAGAGGCAATGCACCATCCTTGATTTGTATG
CTCTCAATGTTCTCCATCCCTTCAATGTAAAGCAATTTGAGCTTCGGAAATGTACCTTCCCCAAAACATAACGTCTTCTC
GGCGAAGGACTCCTCCCAGAGTGCAAGAAGAGTAAGATTGCGCAGCTTCCCCATCACCTCGACGTCAACCTGCTTCAACT
GTGTCTGAATTAGCTTTACCTTGGCCAGATCCTTGAGACGATCCATCCAGCCAGGGAGGTTGCCCAAACGGCCACACAGG
CGCAGTGATAGGAGATGCTTTGGTGGCATTTCCTCTGCTTTCTTTGCTTCCTTCAGAAATTCAAGCGACCTAGAGCGCAC
TTCAAGCCGTTCCAGATGAACAAGCCTTGATACTGAGCTG
>chr7B_1
ACAGAGAGTAGATTAATTATAGTATACAGTTGGCAG--TGTTCGGATTTAGGGAGATAACAAAAATAGTCGGCATATATT
TGGGAGACAAAGAGAATAGTTGTCTCTTTGTGAAAAAATTAGAATTTAAAATTCTGGATTTCACTTTGCCAAGGAAAACC
GTTTCCAAAATTTTAAATAATCTAGGTATGTCACTGTTGAGCATAGGCATTTGTGTTGCGAAAAAGCTTATTTTTCTATA
GTTGCATCATAATTGAGCAGCTTCATATTTTCATAGAAGATCATAATAAGCATTCATGTCATCACCAATTATGTGTGTAG
CTTAATGTTTAGGTATATAAAGTTCAATACAACTGGCGCCTCCACCCCAGTTAGAAAACTCC---TAATTTTTGTCACTT
ATGGTGCAACTATTATGCAAATAATTGAACAAGAAACAATTGTGTTGGAGAGAAAAGAGATTACAAATGGAGGAAGAGAA
GAAGGATAAGCAGCAAAACCGATCACCGTATTCAAATAGAGTTGTGGAAATGTGTGTGTGTGGGGCAGGGGATGCGAATG
GT------------------------------------------------------------------------------
---------------------------------------TTTAAGCCATGCTTACTAGGCTAGGACATCGTCATATA-TT
TTCTCCCGTTGCAACGCACGGGCATGTTTGCTAGT---------------------------------------------
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>chr5A_764
AAAGAAT-------------------------------------------------------------------------
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--------------------------------------------------AGGCATTGGACATTCCTCCGTCGATCCACA
AATTCGAGGTGCAAATTCCGTCTGCGTCCTTCCTTACCCACGTGTTGTTTTCTCAACACTCAGATGCAGAGGCAG-AAAA
GGCCCTACTTACGTGAACTCTTTGCACTGCGGCACAACAATCGCATATGCTTTCGGGGCCTTATCCATGTCACGGGATCG
CAACCAATGGGAACGTGACATGACGCCTCCGTGGGGCCACGTCTATCTCCCACCCTTTGGTTGCATCTGCAGTTTGAGAG
ACATGCACATGCTTATGCCAATTGCTGCACTACACCATACAGCAGCAGCAACTCAGGGCAGAGCAATGCTCCATTCCATG
GCGCCCCTCCA---CGCCGCCGCCGCCACTGCGCAGCACGCAGCCGTCGGCGCAGCTCCGGGCAGAGATGCTGCTCCGAA
GAAGAACGGCGGCTGCGTTCCAGCCAACCGCGACACCAGGAGGTTCAG-------CCAACTGTTTTTTCTCTTACGATTC
ATGTGACGCGTCTTTGTGTTTCAGACAGCGGCCACATCCTTTGTTTCTGATGTGTACTTGGTGT-CGCAGGGCGTTCCTG
AGCGGCGTGGCGATCGCCGCTGCCGGCGCCGGCGCGCTGCTGGGCCACGTGGACGCGGCGCCGGCGGCCTCCAAGAGGCG
GGCCCCGCCACCGCCGTCGGAGGAGAAGGAGAAGAAGGACCCCAACCTCAGCGGCGTGCAGGCCAAGGTGTTGGCCAGCA
GGAAGCGGAAGGAGGCCATGAAGGAAGCCGTGGCCAAGCTGCGGGAGAAGGGGAAGGAGCCCGCGGACGCGGCCAGCACC
GTAACCGGAATAAAGCCCAGATCGACAGGGGCCGTTGTAGAGTGAGTTTGTGTTGGGTGCCGC-----------------
--------------CGCTTAATTTACCAGCTTCTCATTTGTCGATGAGGAGCACATAACAGAGATCGATTCGCCATATCT
TAGCATAAATATTTACCCAA-TGAGTATCGTTTTGCTGCCTGCGATGGAAG--------TACACGCTTGAATTGATGCGC
TCTTATCTGTGAATA----ACCTGGCAATGCCAGTACCAGACAGTCAATGATAAACAACGTAGATGAAGTTCACCAAGCA
AAAATTC-------------------------------------------------------------------------
----------------------------------------------------------------CGCTCTGGAACTTGAC
CTTCGCCAAGCAACTCTGCCGGCTAATTTGCGTAAGAATACGTTCAAACTTGTGATACTGATATTACCAAAAAAAATGCT
ATACATGCCAGATCTTCATTG--GAAAAAAAGTATCAAAACACATTACATTCCTTTACGAAATTACATGAGAAATCTATT
T---CTACTATATCTGGAGAGTACAAATAAACTTGTGTGCATCATCT---ACATCAGAACAGAGGTAGCGCGTAAGCTAA
CTCCTAGATACAATGGACTTTCCAGTAATAAACTTGGGGCGCTTCTTAAATCCACTAATCTGCTTTTGAAGTTCCTTCTC
CAGCTTCGGTTTGTCGCCGCAACTTGTCAAGACTAGTTCATTCAGGTTTTGGAGGA---CCAGCACAAGGGACAAGCCCT
CCTTACTGTCGTCCAAGTTAACGCATTTCTTCACTTCAAGTTTCTCGAGCACGGCCAATGCACCATCTTTGATTTGTATG
CTCTCGATGTTCTCCATCCCTTCAATGTAAAGCAGTTTGAGCTTCGGAAATGTACCTTCCCCAAAACATAACATCTTCTC
GGCGAAGGACTCCTCCCAGAGTGCAAGAAGAGTAAGGTTGCGCAGCTTCCCCATCACCTCGACGTCAACCTGCTTCAACT
GTGTCTGAATTAGCTTTACCTTGGCCAGATCCTTGAGACGATCCATCCAGCCAGGGAGGTTGCCCAAACGGCCACACAGG
CGCAGTGATAGGAGATGCTTTGGTGGCATTTCCTCTGCTTTCTTTGCTTCCTTCAGAAATTCAAGCGACCTAGAGCGCAC
TTCAAGCCGTTCCAGATGAACAAGCCTTGATATTGAGCTG
>chr5B_904
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-----------------------------CGGCACAACAATAGCATATGCTTTCGGGGCCTTATCCATGTCACGGGATCG
CAGCCAATGGGAACGTGACATGACGCCTCCGTGGGGC-ACGTCTATCTCCCTCCC-TTGGTTGCATCTGCACTTTCAGAG
GCATTGACGCGCTTATGCCAATGCCTGCACCATACCATACAGCAGCA---ACTCAGGGCAGAGCAATGCTCCATTCCATG
GCGCCCCTCCACGCCGCCGCCGCCGCCGCCGCGCAGCACGCAGCCGTCGGCGCGGCTCCGGGCAGAGATGCTGCCCCGAA
GAAGAGCAGCGGCAGCGTTCCAGCCGGACGCGACACCAGGAGGTTCATTTCATTTCCAACTGTCCTTTTTCTCTGAGAAC
ATGTGGTCGATGCGTATCATCAGTAATATCTACCCT-----------TGATGCCTTCTTATCGCACGCAGGGCGTTCCTG
AACGGCGTGGTGATCGCCGCTGCCGGCGCCGGCGCGCTGCTGGGCCACGTGGACGCGGCGCCGGCGGCCTCCAAGAGGCG
GGCCCCGCCGCCGCCGACGGAGGAGAAGGAGAAGAAGGACCCCAACCTCAGCGGCGTGCAGGCCAAGGTGTTGGCCAGCA
GGAAGCGGAAGGAGGCCATGAAGGAAGCCGTGGCCAAGCTGCGGGAGAAGGGGAAGGAGCCCGCGGACGCCGCCAGCACC
GTAACCGGAATAAAGCCCAGATCGACAGGGGCCGTTGTAGAGTGAGTTTGTTATGGGTGCTGCTTAATTT----------
---------------------TTTACCAACTACTCATTTCTCAATGAGGAGCACATAACGGAGATCGATCCACCATATCT
TAGCGTAAATATTTACTGAG-TGAGTATCGTTTTGCTGCGTGC-----------------------TTCAATTGATGCGC
TACTATCTGTGAATA----ACCTGGCAATGCCAGTACCAGC----CAATGATGAACAACGTAGATGAAGTTCACCAAGCA
AAAATT--------------------------------------------------------------------------
---------------------------------------------------------------TCGCTTTGGAACTTGAT
CTTCACCACGCAAGTTTGCCGGCTAATTTCCGTCAGACTATGTTCAAACTTATGATACTGATACTACCAAAAA---TGGT
ATACATGCCAGATCTTTCTTGGAGAAAAAAA-ATTCAAAATACATGGCATTCCTATACAAAAATTACTC-----------
-------CTATATCTGGAGAGTTCAAATAAACTTGTGTGCATCATCTAGTACATCAGAACAGAGGTAGTGCGTAGGCTAG
CTCCTAGATACAATGGACCTGCCAGTAATAAACTTTGGGCGCTTCTTGAATCCACTAATCTGCTTTTGAAGTTCCTTCTC
CAGCTTCGGTTTGTCACCGCAACTTGTCAGGACAAGTTCATTCAGGTTTTGGAGGA---CCAGCACAAGGGACAAGCCCT
CCTTACTGTCGTCCAAGTTAACGCATTTCTTCACTTCAAGTTTCTCGAGCACAGGCAATGCACCATCCTTGATTTGTATG
GTCACGATGTTCTCCATCCCTTCAATGTAAAGCAGTTTGAGCTTCGGAAATGTACCTTCTCCAAAACATAACGTCTTCTC
GGCGAAGGACTCCTCCCAGAGTGCAAGAAGAGTAAGGTTGCGCAGCTTCCCCATCACCTCGATGTCAACCTGCTTCAATT
GTGTCTGAATCAGCTTTACCTTGGCCAGATCGTTGAGACGATCCATCCAGCCAGGGAGGTTGCCCAAACGGCCACACAGG
CGCAGTGATAGGAGATGCTTTGGTGGCATTTCCTCTGCTTTCTCTGCTTCCTTCAGAAATTCAAGCGACCTAGAGCGCAC
TTCAAGCCGTTCAAGACGAACAAGCCTTGATATTGAGC--
>chr5D_1324
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------------------------------------------------------------------GCAGGGCGTTTCTG
CACGGTGTGATGATCGCTGCCGCCA-CGCCGGCGCGCTGCTGGGCCACGTGGACGCGGCGCCGGCGGCCTCCAAGAGGCG
TGCCCCGCTGCCGCCGTCGGAGGAGAAGGAGAAGAAGGACCCCAACCTTAGCGGCGTGCA-GCCAAGGTGTTGGCTAGCA
GGAAGCGGAAGGAGGCCATGAAGGAAGCCGTGGCCAAGATGCGGGAGAAGGGGAAGGAGCCCGCGGACGCCGCCAGCACC
GTAACCGGAATAAAGCCCAGATCGACAGGGGCCGTTGTAGAGTGAGTTTGTTATGGGTGCCGCTTAATTTTTC-------
-------------------------CCAACTACTCATTTCTCAATGAGGAGCACATAACGGAGATCGATCCACCACAGCT
TAACGTAAGTATTTACTCAG-TGGTTATCGTTTTGCTGTGTGATGGACAGACGGAGTACTACCAGCTGGAATTGATGAGC
TCTTATCCGTGAATATATAACTTGTCAATGCTAGCACCAGG---TCAACGATGAAGGTAATTTACGAAACTCAGTAGACG
AATGTCTATGAAACAATAGTGTGCTTCACCATCTTTCCTCTGCGGAAAACAACTAACGAAAAAAGATTCCAAGTCTGGCA
GTATCATTCATCAGGAAGCGGAAGAGAAAAATGCTAATCTCTCTTGATGTTGTAGAAAGAATGTCGCTCTGGAACTTGAT
TTTCACCAAGCAACTTTGCCGGTGAAATTTCCCAAGAATATGTTCAAACTTATGACATTGATATTGCCAAAAA---TGAC
CA---------ATCTTCCTTG--GAAAAATA-TACCAAAACACATGACAATCTTTAAAAAAATATTACATGATATAT---
------------TCTAGAGAGTTCAAATAAACTTGTGTGC-------------------------------------TAA
CTCCTAGATACAATGGACTTGCCAGGAATAAACTTGGGGCG---CTTAAGTCCACTCATCTGCTTCAGAAGTTCCTTCTC
CAGACATGGTTTGTTACCACAACTTTTCAAGACAAGTTCGTTCAGTTTTTTCAGGGCGGCCAACACAAGGGACAAGCCCT
TATCAGTGTCATCCAAGTTAGTGCAGTTATTCACTTCAAGTTTCTCCAGCTCGGGCAAGGCACCTTCCTCGATTTGTATG
GTCGTGATGTTCTCCAGCCCTTCTATGTAAAGCACTTTGAGCATTGGGAATGTACCTTCCCCAAAACATGCAGTCTTCTC
GACGAAGGACTCCTCCCAGAGTGCAAGAAGAGTAAGGTTGCGCAGCTTCCCCAGCACATCAATGTCAACCTGCTTCAATT
GTGTCTGAATTAGCTTTACCTTGGCTAGATCGTGGAGGGAATCCATCCAACCTGGGAGTTTGCCTAAACGGCCACTCAGG
CGCAATGATAGGAGATGCTTTGGTGGCGGTGA---------CTCTGTTTCTTTCAGAAATTCAAGCGACTCAGAGCGCAC
TTCAAGTCGTTCCAGATGAACAAGATTTGCTATTGAGCTG
>SNPs
---------------------S--------------SS-------------S---S---S---------S-------S--
--------------------------------S-S---------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------S---------SS----------------S----------------S--
--------------------------------------------------------------SSS---S-----------
-----S-----------S--------------S--------------S---------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------SS--
----------S--------S-----------S---SSSSSSSSSSSSSSS------S----S--------S---------
-------S----------------S---------------------------------S--------------S-S----
--------S---------SSS-----------------------------------------------------------
---------------------------SS-------------------------------S-------S-----------
---------------------------S------S----------------S----------------------------
-----------------------------------------------------------SS-------------------
-----------------------------------------------S------------------------------S-
S--S-------S--------------------S-----------------------------------------------
------------S-------S-------------S------------------------S--------S-----------
------------------------------------------S-------------------------------------
--------------------------------------------------------S-S------------------S-S
-------------------------------------------------S---------------SS----SSSSSSSSS
SSSSSSSSSSSSSS----------S-----------S----------S--------------------------S-----
------------------S-S----S-------------------------------------S----------------
----------------------------S---------------------------------------------------
----S---------------------------------------------------------------------------
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------------------------------S-------------------------------------------------
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SSSS-----------S----------------------S-----------------------------------------
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------------------------------------------------------------------------------S-
---------------------------------------------------S----------------------------
-----S----------------------------S---------------------------------------------
------------------------------------S-------------------------------------------
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--------------------------------S-------
>forward_874
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------------------------------------------------------AACAGTCAGATGCAGAGGCG------
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>reverse_1781
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--------------------ATGGTCATCGTTTTGCTGCG----------------------------------------
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