>input_sequence_72046
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-----------------------------ATGAGCGCAAGAGAGATGGTGGAGGAACTGATGAGCATCAAGGAGCTTTAC
AACGATGCTAGGTCATGTCCAAAATGCAGAATGACCATCAGCAAAACCGAAGGTTGCAACAAGGTGGTGTGCATCAGTTG
TGGTCAGGCATTCTGTTTCCTTTGCGGTAAGGCTATCATCGCTGGCTATGCCCATTTCAGGTAGGCCAGTCGTCTGAGAT
ATCCAGGGTCTTTTTAGAG--AAAAAACAGGGGGTCTCAAGCTTACTTATCTTTATGCGTGTATGATTTGTGACAAACTG
CAGTAGGAACTGTGACCTCTTTGCGGAGAAGGAAAAGGACACGATGGACTGGCGGAAGCGCCTGGAACAACTCGAAACCG
GAAACCGCATGCGAGTTCAAAGCCAGCCGGTAGGCAGCACCGTGAAATGCCCGAAATGCCGTCAAAAGATTTACAAGGTA
ATATAATGAGACCCTATCTTTTTCAGTCC------GTAAGATGGCATGAATGCAAGCAGGTTTGTCTCTATTGCATCTGA
CCAATGGCCGCGTGCATCCAGGGCGACGATAAGTATATTTTCTGCTGGGTGTGCCAAGCCACCTATTGCACGATGTGCAG
AAAGCAGGTCCAGTTTACCGGGATGCAGAGCGAGCACTGGGGTTCACCGCAATGCGTGGGGATAAAGTTCTAG-------
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>chr2B_1_TraesCS2B01G466900
TCAGTTACAGTAGTACGAAGTGCTATCAAGTTTTTCTTGAGGATCTCCATATGTGCATGATTTGCCTTAACCAGACTAAT
GGTAGGCC------------------------------------------------------------------------
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----ATTTTGACTTTTCTAATTAAGCTTC---------------------------------------------------
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-------------------------------------------------------TTATAAGAAACTGAATTAGGATCAT
TAAATTTCTTCCCTGGTAA--ACTAACTTTAATTTTGAAATAATTAGGTTCAAATTTCATCAGACTTCCGTGCGAGCACT
TCTTTTGTGTCAAGTGCATGGAGACATTATGCAAGATGCATGTGAAGGAAGGTACTCTGTTTCAGTTGATATGCCCTGAT
ACCAAGTGCACTGCTTCTA-TCCACCGTATTTGTTAAAGAGGCTTCTCGACGAGGAAGAGTTCGAACGCTGGGATAGGCT
TACTCTTGAGAAAGCATTGGACTCGATGTCAGACGTGGTTCATTGTCCAAGATGTGCAATTGGTTGCTTGGAAGATGAGG
ATAACAATGCACAGTGTCCAAAATGTTGCTTTGTCTTCTGCTCGTTGTGCAAGGATTCTCGCCATCCAGGGAAGCAGTGC
CTAACTCTAGAAGAAAAGATCCGGCAGCGACAGGTATAAATGCATCTCT-------TACTCCCTCTTTCCCAAAATATAA
GTCATTTTTTACCGTTTACGGTCTCTAGTGCACAACTTTTACTGTTTTTTCACTTACATGGCTAAAATTTCAGTAAA---
----------------------------------------------------------------------------ATGT
TGTGGGGTTGGACGGTGACTGAGACTAAGTTATTTTGTGTTCCAAACTTCCTCCTTTTCAAAAAAAAAATTGCATTACTA
TTATACTACTACAAAACAACTTGCGGTTTG--------------------------------------TTGGTAAATCCT
TCAAATATACATTTCATTTGCCATCTATAATAGATCTTTGAAGAGTCTCGTATGCTTTTGGCATCTCCTCGTCGCATTAC
TACCCTACCAGTCTAATTGGCCGTCGGATAAAATTTAATTTCAAGTTACTGAATATCTCCCACCTCTTGTCCTCCATTTT
ATGTAGGCACTCGGCAGGCAGCTGGCAAGATGAGCGCAAGAGAGATGGTGGAGGAACTGATGAGCATCAAGGAGCTTTAC
AACGATGCTAGGTCATGTCCAAAATGCAGAATGACCATCAGCAAAACCGAAGGTTGCAACAAGGTGGTGTGCATCAGTTG
TGGTCAGGCATTCTGTTTCCTTTGCGGTAAGGCTATCATCGCTGGCTATGCCCATTTCAGGTAGGCCAGTCGTCTGAGAT
ATCCAGGGTCTTTTTAGAG--AAAAAACAGGGGGTCTCAAGCTTACTTATCTTTATGCGTGTATGATTTGTGACAAACTG
CAGTAGGAACTGTGACCTCTTTGCGGAGAAGGAAAAGGACACGATGGACTGGCGGAAGCGCCTGGAACAACTCGAAACCG
GAAACCGCATGCGAGTTCAAAGCCAGCCGGTAGGCAGCACCGTGAAATGCCCGAAATGCCGTCAAAAGATTTACAAGGTA
ATATAATGAGACCCTATCTTTTTCAGTCC------GTAAGATGGCATGAATGCAAGCAGGTTTGTCTCTATTGCATCTGA
CCAATGGCCGCGTGCATCCAGGGCGACGATAAGTATATTTTCTGCTGGGTGTGCCAAGCCACCTATTGCACGATGTGCAG
AAAGCAGGTCCAGTTTACCGGGATGCAGAGCGAGCACTGGGGTTCACCGCAATGCGTGGGGATAAAGTTCTAGCCTCGAT
CATACCTGTGCTCTCATTGTTGCAGTTTTGCAGATTAAA--ACTTCTATACGTTTGATGTATTCCGATTAGTTGATTAAA
CACGATATACGATTCTAGATACATCCCCTTTTATCCATTTTGATGACAAGTATTTCCGGACGGAGGGAGTATTAAAAGCA
AGGGTGACTAAGTTGGACAGTTGGTACATGTTGTATATGAGATCATGCGTGGTCAATTCCCTTCGTGATAGTACTCTTTC
ATCTGTCTTGCTACTTATCTATTTTTTGCGACGAAAGCTTATTTGTCGGTGGCAGAGCATTTTGTGCCAACACCTTGTAC
AGGGACTACCAGACAGTTCAACGTCAACATTGCCACCATCTCCATGTGGTTCGCTTGATTACTGTTGATAGTACTCCCTC
TGTAAACTAATATAAGAGCGTTTAGATCACTAAAATAATGATCTAAACACTTCTATATCAGTTTACACTTTACAGAGGGA
GTATCATCTTGCGCCGAGATAATCTATCCTTAACTGTCGATCAGATGTACGAGTTTTTTCTTCCAAAGTCTCCCATTGTG
CCTTAACTCCAAGTTGGAGCATGTGACATTGTCATTCGGCCTTCCAGTAACATGGTTTCATGACAAACTAGAATTCAATA
CCATTTGTATACACGTTTTCCATTTGGCACTGGAAGCAAAGATCTGATAGAAATGCCTTCAAAGCATTGTAGCAAAAAAA
TATTATATCTCAAGAATAGTTCATCTATGTCAGTTGTAACAAAGAAGAAATGCGGTATCACATAGTAAGCCACTCAGTGT
AAAAATTCAGAACATCACCTCTAATCCAATAAGTTAAACGTCAAAATAAATGATTTGAAGTATATTTGGTGGGCTCTATT
CAGGAAACAACCATGATGCCCCAAAACTCGAAAACAGTAGCTGGCACGAGCAAGCAAGACGACGCCTCCATGAAAGGTAA
CGACGACGTGATGCCGCCATCGTCCAATCCATGTA
>chr2A_1
TCAGTTATAGTAGTAGGAAGTGCCATCAAGTTTTTCTTGAGGATCTTCATATGTGCATGATTTGCCTTAACCAGACTAAA
GGTAATCCTTATTCTTTTTTGATTTGTTTTTTTGTGTAGTCATACGAAAATCATACAAAAATAACACGCCCTTTTGTTAT
TTACTTGCCTTGGATCTTCCTTGGAAGAATGCCACTTACTACCCCCTGTCCTGGTTTGTTAGTCCCTTTTGTATTTTGTG
CCAAATTTTGACCTTGATTTAATTGACAATATGTTAATGCATGTCATACAAAATAATATAATTGAAAACTATGTTCAAAT
ACGAATCCAACGATATAATTTTTTGTAACATACATTGATATTTTGTTAGTTAAATCTCTAGTTAAAAGTTGACACAAAAT
ACATAGAGGACTTCTAAACCAGGACGGAGATAGTATTCTATGGGATCCATTCCACACTTTATGTGGCTGAAATTTCCGTA
CCTCATAGTAGATATTATAAGTACTACCGGTTGTGGTTGGGCATTTAGTTATGCTTTTTAGGAAATTGAATTGGACTCAT
GGCAGTTCTTCGTCCCTGTAGACTAACTTCTATTTTGAAACAATTAGGTTCAAATTTCATCAAGCTTCCATGCGAACATT
TGTTTTGTGTCAAGTGCATGGAGACCTTATGCAAGATGCATGTGAAGGAAGGTACTTTGTTTCAGTTGATATGCCCTGAT
ACCAAGTGCAATGCTTCTATTCCACCGTATTTGTTAAAGAGGCTTCTCAGCGAGGAAGAATTCGAACGCTGGGATAGGCT
TACTCTTGAGAAAGCATTGGACTCGATGTCAGATGTGGTTCAGTGTCCAAGATGTGCGATCGGTTGCTTGGAAGATGAGG
ACAACAATGCGCAATGCCCAAAATGTTTCTTTGTCTTCTGCTCGTTGTGCAAGGATTCACGCCATCCAGGGAAACAATGT
CTAACTCTGGAAGAAAAGATCCGGCAACAACAGGTAGAACTGCGTCTAAAATATTCTACTCTCTCTTTCCCAAAGTATAA
GTCCTTTTTGACCTTTTACAGTCTCTAGTACATAATTTTGACTATGATTTCCACATATAACATGGTCTATATGACACAAA
AGGCAAAAGTATTTTGTAGGACAACTACAATGAAATTATTTTTACATGTTAATCTGCTACTTTTGCGCATATTACTATGT
TGTTGGATTGGAACAAGACTGAGACTAGATTATTTATGTCC-----------------------AAAACTTATATTGCTA
TTTACTATGCAATTGATACTCATTTTCATCGTCCTTGCTTGCGTATACCCGCAAAAATAGCTTTTGCTTTGTTGATTCAT
TCAAATGTACAT-TCATTTGATATCTATCATAGATCGTTGGAGAGTGTACATT-CTTTTGGCAACTCCTTGTCGCATCAC
TACCCTATCCGTCTAATTCTTCGCTGGATAA-----AATTTCAAGTTATTGAATATCTCCCACCTGTTGTCCTCCATTTT
ATGTCG-------GCAGGCGGCAGGCAAGATGAGCGCAAGGGAGATGGTGGAGGAACTGATGAGCATCAAGGAGCTTTAC
AACGATGCTAGGTCATGTCCGAAATGCAGAATGACCATCAGCAAAACCGAAGGTTGCAACAAGGTGGTGTGCATCAGTTG
TGGTCAGGCATTCTGTTTCCTTTGTGGCAAGGCTATCATCGCTGGCTATGCCCATTTCAGGTAGGCCGGTCATCTGAGAT
ATCCAGGGTCTTTTTAAAATTAAAAAATAGGGGATCTCAAACTTATTTATCTTTATGTGTGTATGATTTGTGACAAACTG
CAGTAGGGACTGTGACCTCTTTGCGGAGAAAGAAAAGGACACGATGGACTGGCGGAAGCGCTTGGAACAACTTGAAACTG
GAAACCGCATGCGAGCTCAAAGCCAGCCGGTAGGCAGCACCGTGAAATGCCCGAAATGCCGTCAAAAGATTTACAAGGT-
----AATGAAACCCTATCTTTTTCAGTCCCTCTCCGTAAGATGGCATGAATGAACACTGGTTTGCCTCTATTGCATCTAA
CCAATGTCCGCATGCATCCAGGGTGACGATAAGTATATTTTCTGCTGGGTATGTCAAGCCACCTATTGCATGATGTGCAG
AAAGCAGGTCCAGTTTACCGGGATGCAAAGCGAGCACTGGGGGTCACCGCAATGTGTGGGGATAAAGTCCTAGCCTCGAT
CATATATATGCTCTCATTGTTGCAGTTTTGCAGAGATTAAGACTTCTATACCTTTTATGTATTCTGATTAGTTGATTAAG
CAAGATA--------------------------------------------------------------TATTGCAAGCA
AGGGTGACTAAGTTGGTACAT------ATGTTCTATATGAGATCATGCATGGTCAATTCCCTTCGTGATAGTACTCTTTC
ATCTATCTTGTTGATTATCTATTTTTTGTGGCAAAAGTTTACGCGTCGGCGGCAGATCATTTGGTGCCAATAGTTTGTAC
TGGGA---------------------------------------------------------------------------
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-----------------------------------
>chr2D_1
TCAGTTATAGTAGTAGGAAGTGCCATCAAGTTTTTCTTGAGGATCTCCATATGTGCATGATTTGCCTTAACCAGACTAAA
GGTAAGCC------------------------------------------------------------------------
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----TTTTTGACTTTTCTAATTAAGCTTC---------------------------------------------------
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-------------------------------------------------------TTATAAGAAACTGAATTAGGCTCAT
TAAATTTCTTCCCTGGTAA--ACTAACTTTAATTTTGAAACAATTAGGTTCAAATTTCATCAGACTTCCGTGCGAGCACT
TGTTTTGTGTCAAGTGCATGGAGACCTTATGTAAGATGCATGTGAAGGAAGGTACTTTGTTTCAGTTGATATGCCCTGAT
ACAAAGTGCACTGCTCCTATTCCACCGTATTTGTTAAAGAGGCTTCTCGACGAGGAAGAATTCGAACGCTGGGATAGGCT
TACTCTTGAGAAAGCATTGGACTCGATGTCAGACGTGGTTCATTGTCCAAGATGTGCAATCGGTTGCTTGGAAGATGAGG
ATAACAATGCGCAATGCCCAAAATGTTGCTTTGTCTTCTGCTCGTTGTGCAAGGATTCACGCCATCCAGGGAAGCAGTGT
CTAACTCTAGAAGAAAAGATCCGGCAGCGACAGGTAGAAACGCATCTCT-------TACTCCCTCTTTCCCAAAATATAA
GTCATTTTTTACCTTTTACAGTCTCTAGTGCACAACTTTGACTGATTTTTCACTTATATGGCTAAAATTTTAGTAAA---
----------------------------------------------------------------------------ATGC
ATTTGC--------------------------------------------------------------------------
-TATACTACTACGAAACAACTTGCGGTATG--------------------------------------------AATCCT
TCAAATATACATTTGATTTGCAATCTATCATAGATCTTTGAAGAGTCTCATATGCTTTTGGCACCTCCTTGTCGTATCAC
TACCCTACCCGTCTAATTGGCTGCTGGATAC-----AATTTCAAGTTACTGAATGCCTCCGACCTATTGTCCTCCATTTT
ATGTCA-------GCAGGCGACAGGCAAGATGAGCGCAAGGGAGATGGTGGAGGGACTGATGAGCATCAAGGAGCTTTAC
AACGATGCTAGGTCATGTCCAAAATGCAGAATGACCATCAGCAAAACTGAAGGTTGCAACAAGGTGGTGTGCATCAGTTG
TGGTCAGGCATTCTGCTTCCTCTGTGGCAAGGCTATCATCGCTGGCTATGCCCATTTCAGGTAGGCCAGTCGTCTGAGAT
ATCCAGGGTCCTTTTTGTCTAAAAAAACAGGGGATCTCAAGCTTACTTATCTTTATGCATGTA-----TGTGACAAACTG
CAGTAGGAACTGTGACCTCTTTGCGGAGAAAGAAAAGGACACGATGGACTGGCGGAAGCGCCTGGAACAGCTCGAAACCG
GAAACCGCATGCGAGCTCAAAGCCAACCGGTAGGCAGCACCGTGAAATGCCCGAAATGTCGTCAAAAGATTTACAAGGT-
----AATGAAACCCTATCTTTTTCAGTCT------GTAAGATCACATGAATGAGCACTGGTTTGCCTCTATTGCTTCTAA
CCAATGTCTGCATGCATCCAGGGCGACGATAAGTATATTTTTTGTTGGGTGTGCCAAGCCACCTATTGCACGATGTGCGG
AAAGCAGGTCCAGTTTACCGGGATGCAGAGCGAGCATTGGGGGTCACCACAATGCGTGGGGATAAAGTTCTAGCATCGAT
CATATATGTGCTCTCATTGTTACAGTTTTGCAGATTAAATTACAGTTTTGTAGATTAAATTACAGTTTTGCAGACTA---
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------------------AGTTGGTACATGTTGTATATGAGATCCTGCATGGTCAATTCCCTTCGTGATAGTACTCTTTC
ATCTATCTTGCTATTTATCTATTTTTTGTGGCAAAAGCTTATGCGTTGGCGGCAGAGCATTTTGTGCCAATAGTTTGTAC
AGGGA---------------------------------------------------------------------------
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-----------------------------------
>SNPs
-------S-------S-------S-------------------------------------------------------S
----S---------------------------------------------------------------------------
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---------------------------------------------------------------------------S----
----------------------------------------S---------------------------------------
-S-----------------------S------------------------------S-----------------------
-----------------------------------------------------------S--------------------
------------------------------------------------------------S-------------------
----------S--S--S-----------------------------------------S--------------------S
------------------------------------S-------------------------------------------
-------------S-----S-------------------S----------------S-------------S---------
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---S--S-----SSSS-----------SS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--SS---S---
------------S--------------S-------------------------------------------S-S------
---------------------S------S--------------------S-------------S-----S-------S--
---------S-------------SS------SSSSS-----------------------------S--------------
----S-SSSSSSS------S--S-----------------S---------------------------------------
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------------------------S--S----------------------------------------------------
------------------S--------------S----------------------------------------------
------------------------------S-------------------------------------------------
---------------S---------------------------------------------------------------S
SSSS-----S------------------------------------------S-SS-S------S-------------S-
------S----S--------------------------------------------------------------------
------------------------------------------S-------------------------------------
----SS---------------------------------------------S---S--------S--------------S
--S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SS-----
----------------SS------------------------------S-------------------------------
----S--------S--------------S-S-S---------SS-----S--------------------S-SS------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_780
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----------------------------------------GGCTTCTCGACGAGGAAGAG--------------------
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>reverse_2718
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-----------------------------------------------------------------------------GGA
GTATCATCTTGCGCCGA---------------------------------------------------------------
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-----------------------------------
