>input_sequence_72028
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-----------------------------------------------------ATGGCGTCCTCTCGCGTCCTCCACCTC
ATC---GCCCTAGTCCTCGCCGTCACCACCGCCGCAGATGCGGCCACCATCACCGTCGTCAACCGCTGCTCCTACACGGT
GTGGCCGGGCGCGCTCCCAGGCGGCGGCTCGCGTCTCGACCCGGGCAAGTCGTGGCAGCTCAACATGCCTGCCGGCACCG
CGGGCGCCAGGGTGTGGCCGCGCACCGGGTGCACCTTCGACGGCAGCGGCCGCGGGCGGTGCATCACGGGCGACTGCGGC
GGCGCGCTGGCCTGCAGTGTGTCCGGCCAGCAGCCCACCACGCTGGCGGAGTACACCCTGGGCCAGGGCGGGAACAAGGA
CTTCTTCGACCTGTCCGTCATCGACGGGTTCAACGTGCCCATGAGCTTCGAGCCCGTCGGCGGGT---CGTGCCGCGCTG
CGCGCTGCGCCACGGACATCACCAAGGAGTGCCTCAAGGAGCTGCAGGTGCCTGGAGGGTGCGCTAGCGCGTGCGGCAAG
TTCGGCGGCGACACGTACTGCTGCCGGGGCCAGTTCGAGCACAACTGCCCGCCGACAAACTACTCGAGGTTCTTCAAGGG
CAAGTGCCCGGACGCCTACAGCTACGCCAAGGACGACCAGACCAGCACCTTCACCTGCCCACCTGGAACCAACTACCAGA
TCGTCCTCTGCCCTTAG---------------------------------------------------------------
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>chr7B_1_TraesCS7B01G417700
ATTTCCGTCCGTTGGATGCACGTGAAACACAGTTTTCTTTCAAACTGGGCCTTCTGTCTTTGGGGCAGCTACTCTCATGG
CTTTTTTCGACGCTTCTGGTTGATTGGGCTAGGTAGCCCTTCTAGGGGTAGCAAGGGAAAGTAAGGCCCGTCTAATCTCC
CCAGTGTAATATACAACGGTACTTTCATATACAACGGTACTTTGGGACTTATGAGAGTGTTGTCACTTGTCTCAAAAAAA
ATGAGTGTGTTGTCACGTTGTGTGTTGTTCATTGTGAACGCGTGTGTGTGCGCGTGTGTTGTTCTTTGCGAACATGTGCG
TGTGCTGGCACATATGCGTGTTTGCTGTCATGTGTGCATTCTGTTTTAACCTCTTTGTTCAAGTCTAGTTTTTTCGACCT
AATCGTTATGCATGTATGCAACCTAACATTAGTGAAAATTGATTTCACAATACAGAGATCCATATGCAGACAACCAAACA
ACATGTAAACGCCATATTTTGCCCTGTATTTCCTCAGCTTGGCTCCACTCAGCCTGATCCATTTTTTCATGCAACCTCTA
AAAATCAATGTAGATAACCAAACACGCCCTAGGTGATTATGGAGCATAACAGATGAGATCACCTCGGACCAATGCCTCAC
CGACGGCCAAAAACAATTGGCACATAAGTCTTCATTTTGACCGTCCGTTCATTAGACCTCTAGTGGTGCATTGTACACTG
CTGCAAGCATACATGAGGTGGCATCTATCATTTGGATTCTAGAACCATACATGCATGCATATTGCATGCTGCCAAACGCG
ATCGTGGAAAACGTCGATCGAGCCAGCTAGCTTTGGACTGAGCACGAC--ACGCATGCAACCTAACTTTATG-TACTAGC
AACAGGCAGCATTGCGGCTATAAATACCTCCACCGCGGGCGAGAGCAGCAGACCACCATTCACCAGCGCT----GCACGC
ACACTACCATCACAA-CTCGT----CCGAGAATACCAAGAGCGGCA-TCATCCATGGCGTCCTCTCGCGTCCTCCACCTC
ATC---GCCCTAGTCCTCGCCGTCACCACCGCCGCAGATGCGGCCACCATCACCGTCGTCAACCGCTGCTCCTACACGGT
GTGGCCGGGCGCGCTCCCAGGCGGCGGCTCGCGTCTCGACCCGGGCAAGTCGTGGCAGCTCAACATGCCTGCCGGCACCG
CGGGCGCCAGGGTGTGGCCGCGCACCGGGTGCACCTTCGACGGCAGCGGCCGCGGGCGGTGCATCACGGGCGACTGCGGC
GGCGCGCTGGCCTGCAGTGTGTCCGGCCAGCAGCCCACCACGCTGGCGGAGTACACCCTGGGCCAGGGCGGGAACAAGGA
CTTCTTCGACCTGTCCGTCATCGACGGGTTCAACGTGCCCATGAGCTTCGAGCCCGTCGGCGGGT---CGTGCCGCGCTG
CGCGCTGCGCCACGGACATCACCAAGGAGTGCCTCAAGGAGCTGCAGGTGCCTGGAGGGTGCGCTAGCGCGTGCGGCAAG
TTCGGCGGCGACACGTACTGCTGCCGGGGCCAGTTCGAGCACAACTGCCCGCCGACAAACTACTCGAGGTTCTTCAAGGG
CAAGTGCCCGGACGCCTACAGCTACGCCAAGGACGACCAGACCAGCACCTTCACCTGCCCACCTGGAACCAACTACCAGA
TCGTCCTCTGCCCTTAGAATAGGACGCGTT-----GAAGGATCAAAAGTATAATAACCGGGATCAATAAGGAACAATGAC
TACTCTGAGTAGTCTACTT------ATATGTATGTGCCATGTCACGTATATGCATATGCATGACT-GTG-CTTGTATGTT
GACCAATAATAAATAAATGGTTAAATAATAGTATAAGTATGTCACGTGGTGTTTTTTGTGGGTGCTGAAAATCAGTGGAT
TTTCTGCACCACTATCCTCCATCTTCATCTTGCAGTGCACCACTACCCTCCATCTTCATCTCCGAGTTGGGAGTTGGCCG
GTGACGTTCTGTTGAGGCAGCTAGGATTTAATGCAG--CTTGTCGCCACCTCTTCCTGATGCCAACCTACTGCTATAACA
ATCGTCTTCTCGACCTTTGTTGAGCGGATTTTC-ATTTTCCATTATGAGATGTTGTGGCGAACATGG-------------
GTAACGAGGTTGGGAGGGTGGGATTAGGCATCGTCCTGTCAGAAACCCTGGAGATGGAGGTCCCATGGTGTCACTCAAGG
GATTGGAAGA-TTTAACCTTCATGTGTTCGGCTTTTCACTTGGCTGGATTTAACCACTTTGT-AAAATTAAGTGTTTGAA
AATTGAATATGCATACAATTAATTGTGGCTTGAAGTTAGGAATTCGCCTACCCCATTGCTGATTCGCCAAACATTTTGAC
TAGTAGTAGTAAGTTATAGATAAAAATGGTATTGTTGGATTTTTTTTCAATAGAAAATTCCAATCTATTAATAATCAATC
ATGACAGTACAAAGAACATTAAAGGTAACTAAAATTACAACAAGGTCTATAAACCATCTACCGACATCTATAAGCAATGT
AGCGAACCGAAGGGGCACCATCATCATCGCCCCTCTCTTATCGGAGCCAGGCAAACCATCTTGTAGTACACAATCGGGAA
GACATCGTGTTCAGGCCCTAAGAAACTAGCGCGCCAATGCAGCAACCATCACCGACGAAGAGAGTCATAGACTGAAAATA
TCAATCAT
>chr5B_703
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--------------------------------------------------------------GTGGTGCATTGTACACTG
CTGCAAGCATACATGAGGTGGCACAATTTGGATTC-TACTAGAACCATACATGC----ATATTGCATGCTGCCAAACGCG
ACCGTGGAAAACGTCGAGCCAGCTAGC-AGCTTTGGACTGAGCACGACACACGCATGCAACCTAACTTTATACTACTAGC
AACAGGCAGCATTGCGGCTATAAATACCTCCACCGCAGGCGAGAGGAGCAGGCCACCATTCACCACCG------------
---------TCACAA-GTCATACTCTCGAGAACAACAAGAGCGGCAATCATCCATGGCGCCCACTCGCGTCCTCCACCTC
ATC---GCCCTCGTCCTCGCCGCCGCCGTCGCAGCAGATGCGGCCACCATCACCGTGGTGAACCGGTGCTCCTACACGGT
GTGGCCGGGCGCACTCCCAGGCGGCGGCGCGCGTCTCGACCCGGGCAAGTCGTGGCAGCTCAACATGCCAGCCGGCACCG
CGGGCGCCAGGGTGTGGCCGCGCACCGGGTGCACCTTCGACGGCAGCGGCCGCGGCCGGTGCATCACTGGCGACTGCGGC
GGCGCGCTGGCCTGCAGGGTGTCCGGCCAGCAGCCCACCACGCTGGCCGAGTACACCCTTGGCCAGGGCGGAAACAAGGA
CTTCTTCGACCTGTCCGTCATCGACGGGTTCAACGTGCCCATGAGCTTCGAGCCCGTCGGCGGTT---CGTGCCGCGCTG
CGCGCTGCAGCACCGACATCACCAAGGAGTGCCTCAAGGAGCTGCAGGTGCCGGGAGGGTGCGCGAGCGCGTGCGGCAAG
TTCGGCGGCGACACCTACTGCTGCCGGGGCCAGTTCGAGCACAACTGCCCGCCGACCAACTACTCGAAGTTCTTCAAGGG
CAAGTGCCCCGACGCGTACAGCTACGCCAAGGACGACCAGACCAGCACCTTCACCTGCCCCGCTGGAACCAACTACCAGA
TCGTCCTCTGCCCCTAGATTAGGTGCATGCGCCAGGAAGGATCAAAAGTATAATTACTGGGATCAATAAGGAATAAGGAG
CACTCTTAGTCTACTGATGAACATCATTTGTATGTGCCATGTCACATATGC----ATGCATGACTAGTG-CCTGTATGTC
GACTAATAATAAATAAATGGTTGAATGA---TATAAGTATCTCTCGTGGTGTTTTTTGTGGGTGCTGAAAACCA------
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>chr5A_704
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---------------------------------------------------------------TGGTGCATTGTACACTG
CTGCAAGCATACATGAGGTGGCACAATTTGGATTC-TACTAGAATCATACATGC---CATATTGCATGCTGCCAAACGCG
ACCGTGGAAAACGTCGAGCCAGCCAGC-AGCTTTGGACTGAGCACGAC--GCGCATGCAACCTAACTTTATA-TACTAGC
AACAGGCAGCATTGCGGCTATAAATACCTCCG-CGCGGGCGAGAGCAGCAAGCCACAATTCACCACCGCGGCACGCACAC
AAGCTACCGTCACAA-GTCGTACTCCCGGGAACAACAAGAGCGGCA-TCATCCATGGCGTCCACTCGCGTCCTCCACCTC
ATC---GCCCTCGTCCTCGCCGTCGCCACCGCCGCAGATGCGGCCACCATCACCGTCGTCAACCGTTGCTCCTACACGGT
GTGGCCGGGCGCGCTCCCAGGCGGCGGCGTGCGTCTCGACCCGGGCCAGTCTTGGGCGCTGAACATGCCCGCCGGCACCG
CGGGCGCCAGGGTGTGGCCGCGCACCGGGTGCACCTTCGACGGCAGCGGCCGGGGCCGGTGCATCACGGGCGACTGCGGC
GGCACGCTGGCCTGCAGGGTGTCCGGCCAGCAGCCCACCACGCTGGCCGAGTACACCCTGGGCCAGGGCGGGAACAAGGA
CTTCTTCGACCTGTCCGTCATCGACGGGTTCAACGTGCCCATGAACTTCGAGCCCGTCGGCGGTT---CGTGCCGCGCTG
CGCGCTGCGCCACGGACATCACCAAGGAGTGCCTCAAGGAGCTGCAGGTGCCCGGAGGGTGCGCGAGCGCGTGCGGCAAA
TTCGGCGGCGACACCTATTGCTGCCGGGGCCAGTTCGAGCACAACTGCCCGCCGACCAACTACTCGAAGTTCTTCAAGGG
GAAGTGCCCCGACGCCTACAGCTACGCCAAGGACGACCAGACCAGCACCTTCACATGCCCAGCCGGAACCAACTACCAGA
TCGTCCTCTGCCCTTAGATTAGGACGCGTT-----GAAGGATCAAAAGTATAATAACTGGGATCAATAAGGAACAAGGAC
TACTCTTAGTAGTCTACTTGG------ATGTATGTGCCATGTCACATATATGCATATGAATGACT-GTGCCTTGTATGTT
GACCAATAATAAATAAATGGTTGAATGT---TATAAGTATGTCTCGTGGTGTTTTTTGTGGGTGCTGAAAACCAATTCAA
ATTTTTTTC-----------------------CAGTGCACCACTACCCTCCATCTTCATCTCCGAGCTGTGAGTTAACCG
GTGACGTTCTATTGAGGCAGCTATGGTTTGATGAACCTCTTGCCGTCACCTCTTCCTAATACCAACTTACTACTATAACA
ATCATCTTCTCAACCTTTGTTGAGCGGATTTTAAATTTTCCATTATGAGATGCGGCGAACATTGGTGACCATGCAGAATC
GTAACGAGATTAGGAGGGTGGGATCGAGGATCGTCTTGTGAGAAACCAGGGATATGAATGTCTCATGGTGGCACTCAAGG
GATTAGTGGATTTAAACCTTCATTTGTTCGGTTTTTGAGTTGGTTGGATTTGACAAGTTTGTAAAAAATAAGTGTTTGAA
AATTCAACATGCATAC----------------------------------------------------------------
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>chr5B_871
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-------------------------------------------------------------------------TAGTAGC
AACAGGCAGCATTGCGGCTATAAATACATCCACCGCGGGCGAGAGCAGCAAGCCACAATTCACCACCGCT----GCACGC
ACACTACCATCACAAACTCGT----CCAAGAATACCAAGAGCGGCA-TCATCCATGGCGTCCACTCGCGTCCTCCACCTC
ATCATCGCCCTCGTCCTTGCCGTCACCGTCGCCACAGATGCGGCCACCATCACGGTGGTGAACCGGTGCTCCTACACGGT
GTGGCCGGGCGCGCTCCCAGGCGGCGGCGCGCGTCTCGACCCGGGCAAGTCGTGGCAGCTCAACATGCCCGCCGGCACAG
CGGGCGCCAGGGTGTGGCCGCGCACCGGATGCACCTTCGACGGCAGCGGCCGGGGCCGGTGCATCACGGGCGACTGCGGC
GGCGCGCTGGCTTGCAGCGTGTCCGGCCAGCAGCCCACCACGCTGGCCGAGTACACGCTGGGGCGGGGCGGGAGCCGGGA
CTTCTTCGACCTGTCCGTCATCGACGGCTTCAATACGCCCATGAGCTTCCAGCCCGTCGGCGGCGCGCCGTGCCGTGCGG
CGACCTGCGCCGTGGACATCACCAGGGAATGCCTGCCAGAGCTGAAGGTGCCCGGAGGGTGCGCGAGCGCGTGCGGCAAG
TTCGGCGGCGACACGTACTGCTGCCGTGGCCAGTTCGAGCACAACTGCCCGCCGACGAACTACTCGAGGTTCTTCAAGGG
CAAGTGCCCCGACGCCTACAGCTACGCCAAGGACGACCAGACCAGCACCTTCACCTGCCCCGCCGGAACCAACTACCAGA
TCGTTCTCTGCCC-------------------------------------------------------------------
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>chr5B_984
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-----------------------------------CAACAACGGCA-GCAGCCATGACGTCCTCTCGCATCCTCCACCTC
ATC---GCCCTCGTCCTTGCCGTCGTCGCCGCGGCCGAGGCGACCACCATAACCGTGGTGAACCGGTGCTCCTACACGAT
ATGGCCGGGCGCGCTCCCAGGCGGCGGCGCGCGTCTCGACCCGGGCCAGTCGTGGCAGCTCAACATGCCCGCCGGCACCG
CGGGCGCCAGGGTGTGGCCGCGCACGGGTTGCACCTTCGACGGCAGCGGCCGCGGGCGGTGCATCACCGGCGACTGCGCG
GGCGCGCTGTCCTGCCGCGTGTCGGGCGAGCAGCCCGCCACGCTGGCCGAGTACACGCTGGGGCGGGGCGGGAGCCAGGA
CTTCTTCGACTTGTCCGTCATCGACGGCTTCAATACGCCCATGAGCTTCCAGCCCGTCGGCGGCGCGCCCTGCCGTGCGG
CGACCTGCGCCGTGGACATCACCAGGGAGTGCCTGCCGGAGCTGCAGGTGCCCGGAGGGTGCGCGAGCGCGTGCGGCAAG
TTCGGCGGCGACACCTACTGCTGCCGGGGACAGTTCGAGCACAACTGCCCGCCGACGAACTACTCCAAGTTCTTCAAGGG
CAAGTGCCCCGACGCCTACAGCTACGCCAAGGACGACCAGACCAGCACCTTCACCTGCCCCGCCGGAACCAACTACCAGA
TCGTTCTCTGCCC-------------------------------------------------------------------
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>chr5A_990
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-----------------------------------------CGGCA-GCAGCCATGGCGTGCTCTCGCGTCGTCCACCTC
GTC---GCCCTCGTCCTCGCCGTCGTCGCCGCGGCCAACGCGACCACCATAACCGTGGTGAACCGGTGCTCGTACACGAT
ATGGCCGGGCGCGCTCCCAGGCGGCGGCGCGCGCCTCGACCCGGGCCAGTCGTGGCAGCTCAACATGCCCGCAGGCACCG
CGGGCGCGAGGGTGTGGCCGCGCACAGGGTGCACCTTCGACGGCAGCGGCCGCGGCCACTGCATCACCGGAGACTGCGCG
GGTGCGCTCTCCTGCCGCGTGTCCGGCGAGCAGCCCGCCACGCTAGCCGAGTACACGCTGGGGCAGGGCGGGAGCCAGGA
CTTCTTCGACCTGTCGGTCATCGACGGCTTCAATACGCCCATGAGCTTCCAGCCCGTCGGCGGCGCGCCGTGCCGTGCGG
CGACCTGCGCCGTGGACATCACCAGAGAGTGCCTGCCGGAGCTGCAGGTGCCCGGAGGGTGCGCGAGCGCGTGCGGCAAG
TTCGGCGGCGACACCTACTGCTGCCGGGGCCAGTTCGAGCACAACTGCCCGCCGACCAACTACTCGAGGTTCTTCAAGGG
CAAGTGCCCCGACGCCTACAGCTACGCCAAGGACGACCAGACCAGCACCTTCACGTGCCCAGCCGGAACCAACTACCAGA
TCGTCCTGTGCCC-------------------------------------------------------------------
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>chr5B_990
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-----------------------------------------CGGCA-GCAGCCATGACGTCGTCGCTCATCCTCCACCTC
ATC---GCCCTCGTCCTCGTCCTCGTCGCCGCGGCCAAGGCGACCACCATAACCGTGGTGAACCGGTGCTCCTACACGAT
ATGGCCGGGCGCGCTCCCAGGCGGCGGCGCGCGCCTAGACCCGGGCCAGTCGTGGCAGCTCAACATGCCAGCCGGCACCG
CGGGCGCCAGGGTGTGGCCGCGCACGGGGTGCACCTTCGACGGCAGCGGCCGCGGACACTGCATCACCGGCGACTGCGCG
GGCGCGCTGTCCTGCCGCGTGTCAGGCGAGCAGCCCGCCACGCTGGCCGAGTACACGCTGGGGCGGGGCGGGAGCCAGGA
CTTCTTCGACCTGTCCGTCATCGACGGCTTCAATACGCCCATGAGCTTCCAGCCCGTCGCCGGCGCGCCGTGCCGTGCGG
CGACCTGCGCCGTGGACATCACCAGGGAGTGCCTGCCGGAGCTGCAGGTGCCGGGAGGGTGCGCGAGCGCGTGCGGCAAG
TTCGGCGGCGACACGTACTGCTGCCGGGGCCAGTTCGAGCACAACTGCCCGCCGACGAACTACTCGAGGTTCTTCAAGGG
CAAGTGCCCCGACGCCTACAGCTACGCCAAGGACGACCAGACCAGCACCTTCACATGTCCCGCCGGAACAAACTACCAGA
TCGTCCTCTGCCC-------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
-----------------------SSSS-SSSS-SSS-S----------------SSS-----------------------
-S---------------S-S-------S-------------------------------------------S--------
---------------------------------------------------S-------------S--------------
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-----------S-----------------------------------------------------S--------------
----------------------------S----------------------------------------S----------
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-----------------S-----------------------------S--------------------------------
---------------------------------------------------------------S----------------
----------------------------------------------------S-----------S---------------
--------------------------------------------------------S-----------------------
---------S---------------------------------------------------S------------------
------------------S--------------------------------------S------------------S---
------S--------------------------------------S----------------------------------
----------------------S---S-SSS------------S---------------------------S--S-SS-S
S--S-SSS-SSSSSSSSSSSSSSSSSSSSSSS----------------------------------S--S-----SS---
----------S------------S-S---S---S-S------S--S-----------S--S-----S----S--------
---S-------S--------------------S-------------------SS-S-SSS-SSSSS--------------
--------S--S------------SSS-S------S---S-------SS---S---S-S---S-------S---------
----S-SS-----S---------S-------S----S-S----S-------S--S-S----------S------------
----S--S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_289
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-----------------------------CATTGTGAACGCGTGTGTGT-------------------------------
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>reverse_1945
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------------------------TCATCTTGCAGTGCACCACT------------------------------------
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